Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0729400 | OGI:02085890 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:30361908-30363528 | ||||||||
| Gene Symbol | STR11, OsStr11, OsCAS, Cas | ||||||||||
| DNA seq | CACAGGATTCAAACCGATTTGGAATATCACACATGGCACAACTATTGTTTATACGGATTCTCCCTTTTCAATTACTGAAAAACCCCAAAAAAAAAACGAGAGTTGCAACTAGAACATGAGGTGAATATGGGATTTACAGTGACTATTCCAGCCTCTTTCAGCCGTCCACGCTGCCGGGAAGAAGCTTACGACTCGTGGTCGTCCGTGAAGCCGACGACGAAGCCGTCACGAGCCGATCAGCGGCCGCAGGAATTACCCGCGACGGCGTGACGACTTCGACGACCGACAGGTTGTACGAGTCCGTCCCGAGCCGGCTCTGCGCCCACCCTTTCCTGCCGGAGAAGCCGCCGGCCATGACCCAGCAGTTCTTGAATCCGACGCTGTTGAGCGTCTTCGCCACGATCTTCGAGCTGTCGCAATACCTGCAGGCGCCGATCAATGTAAGTTCAGAATTGTCGTTCATCGATCACAGGGCAATTCAAACGATCGATCGCTTGGTTTCAGTGCACCGACGAGTCCATGATGATGACGTTGGAGCCCTTGCCGATCCTCTTGAGGTAGGAGATCTTCAGCGCGGCGATCTCCGCCTCGGCTTGTTTCGCGTTGCGCACCATGCTCTTCGTCTTGCTTGGAAGCTCTTCCAGCCTGAGATCACATCAGTGCAAAGGTGTTTTGGATTTTGCCATGGAAAAAAACAATGGCTATGTGCCACTTGAGGAATGGAAAGAAATGCATACGGGATAGAGATGAGCTTGTTCTTCGCGTTCGAGGGGAGCTGTGGCACGCCGGTTTTGGCCTTGTCCTTCTCGGTCCTCACATCGATCAGCACGTAATCTTGCGAGGTCACCATGTCCAGAGCTTGTGCAGCGGTCAGGTCACCTTAACCAAAAAAAAAAGAAGTGAGCAATCATCCAACGAAGCAAAGCGTGCAAGAGGCGCAATTCAATAGCCAATTCGCAATGTGCTGTGCTGCTACCTTTGTAGCCGCGGAGAGTGAAAGAAAGCAGGGACCATGCCGGCGGCAGGAGCAGGTACGCGAGGAACGCCGCTCCGGCGACCACGACGTAGTCCGCGGAGCCCAGCGACCCGATGGTCTCCACCGTCGCCGACGCGATGGGCTTCGCGGCGTCGATGACCTTCGTGCCCTGCTGCGCCGCGTCCGCGACGGTCTACCGAAACGGAGCATCGTCACCGAATCGAAACGGAGCTGATCAAAGAAGCTTTGCTCGGAGCGGCTGAGACGTCGGGTGTATTACCTTAGCGGCGGACAGAACGGGGGCGGGGTCGACGCCGGCGCCCTGGAGCGCCTCCGTGGCTTGCTTGGAGGCGCCGGAGACCACCGGCGAGGCGAGCTTCAGCGCCTGCTCGCCGGCGCTCTTCAGCGCAGGCAGGGCCGGCTTCGCGGCCTCGCCCAGCGCCTTGAGCACGCCGGCGGACTGCTCGGCCACCTTGCCGCCGACGCCGATGACCTGGTCCACCGTGTCCACCACCTACGCATCGAGAAAATCAAGCACTCTGGCCACAATGCCGCGAAACGAGTTCAGAGTTCCGACGAGAGCGAGCACCGTAGTGGCATTCGCCATTCGCGTACCTTGGTCACGGAGCCGGCGACGTCCTCCTT
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| CDS seq | AAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCGCTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGA
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| Protein seq | KEDVAGSVTKVVDTVDQVIGVGGKVAEQSAGVLKALGEAAKPALPALKSAGEQALKLASPVVSGASKQATEALQGAGVDPAPVLSAAKTVADAAQQGTKVIDAAKPIASATVETIGSLGSADYVVVAGAAFLAYLLLPPAWSLLSFTLRGYKGDLTAAQALDMVTSQDYVLIDVRTEKDKAKTGVPQLPSNAKNKLISIPLEELPSKTKSMVRNAKQAEAEIAALKISYLKRIGKGSNVIIMDSYCDSSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGTDSYNLSVVEVVTPSRVIPAAADRLVTASSSASRTTTSRKLLPGSVDG |
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| Function | Calcium sensing receptor, chloroplastic [UniProtKB/Swiss-Prot:B6TVL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0729400 | Os02t0729400-01 | Chr02 | 30361908 | 30363528 | - | irgsp1_rep | ||
| CDS seq | AAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCGCTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGA
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| Protein seq | KEDVAGSVTKVVDTVDQVIGVGGKVAEQSAGVLKALGEAAKPALPALKSAGEQALKLASPVVSGASKQATEALQGAGVDPAPVLSAAKTVADAAQQGTKVIDAAKPIASATVETIGSLGSADYVVVAGAAFLAYLLLPPAWSLLSFTLRGYKGDLTAAQALDMVTSQDYVLIDVRTEKDKAKTGVPQLPSNAKNKLISIPLEELPSKTKSMVRNAKQAEAEIAALKISYLKRIGKGSNVIIMDSYCDSSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGTDSYNLSVVEVVTPSRVIPAAADRLVTASSSASRTTTSRKLLPGSVDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0729400 | RBH | 11.083738 | 10.327630 | 19.598604 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49680 | RBH | 6.288194 | 5.769798 | 4.182782 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032260 | RBH | 2.749966 | 0.0 | 13.218107 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032370 | RBH | 2.579269 | 0.0 | 5.145647 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032240 | RBH | 9.571972 | 0.0 | 10.984195 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031830 | RBH | 1.332231 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031940 | RBH | 50.866840 | 2.495011 | 40.268051 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031720 | RBH | 1.640351 | 0.000000 | 2.442383 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0525300 | SBH | 22.872513 | 1.428132 | 0.937478 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032030 | RBH | 1.848425 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031790 | RBH | 3.108279 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032150 | RBH | 43.038071 | 4.646241 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0032000 | RBH | 4.650207 | 0.0 | 6.447781 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031620 | RBH | 3.326854 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032290 | RBH | 1.554685 | 0.0 | 7.543744 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0032040 | RBH | 9.425060 | 0.0 | 25.054893 |
