Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0699900 | OGI:02081220 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:28794171-28795262 | ||||||||
| Gene Symbol | WAK17, OsWAK17 | ||||||||||
| DNA seq | AGGGTTTTTGAAGATCCTCGCCGTCGCCGCCATGTATGGGAACTCCGGCGAGGGCCCCCCGTGAGGCGGCCGGACACCTTCCCTGCATCCTCCAGGACGCGGTTAGCAGAGTCTCCACCGCCCAGATCCTCCACTCGTCCGGCTACACCGCGGCGGAGCCAGCCGCCCTCCGCGCCCTCTCCGACATCGCCGGGCGCTACGTTGCCTCCCTGGGCCGCGCGGCCTCGGCCATCGCCGAGGCCCGCGGCCGCACGGAGCCCAACCTCGCGGACCTCACCCTCGCGCTCGAGGACCACGCGCTCGGCGGGTTCCCCGGCGCGTCCGACCCCGCCCGCCCCGTCCTCCGCTCCGGCGCGCTCTCGGAGCTCGCTGGCTTCGTCCGCGTGGTGCGGGAGGTGCCGTTCCCGAAGCCCGTGCCGCGGAGGGGAGGGGCCCCACGCGGCAAGGCGTGGGAGAGCTTCGCGGCGGCGGGGAAGGAGCCTCCGCCGAAGCACGTGCCGCGGTGGCTCCCGCGCTTTCCCGACAAGCCGGAGCCGGAGCCCGAACCAAAGGCGGCGTACGACGAGGCGACGGCGAGGTGGGAGGCGCGCGTTCGCCACGAGGAGGAGGCGAATGCAGAAGAAGCGGTGGTATTGAAGCCGAGCGTTGATGGCGGCGGGGAGCGCAGGGGAGTAGTACCGGAGAAGAGGGGGAAAGTGAGCTTCCGCGTGCGGGCGGAGAGGAAGAAGCGGCGGGTGGGATTGGACCAGCAGTGAGGCGGTGGCTTCGAACGGTTCGCGGAGAATCGAGAAAAATCCGCGGCAATAGTGCGGGCGGCGAGCAACCACCGCTCGGCCGTGGCCGTGGAGAATGGAGATGGACGACACGCCGCGGCGTTGCCCGGTGACCCCTGTCCAGTCGAGGGGTTGAAGAAGACTTGACGAGTTTTGGGCTCTGCCTGGGCCACACGTGGCGCCTATAGGCTACTAGCCCACGAGCCACCTGCCGTCGTGGCTGAACTGGCCGAAAAGGTCAAGTGTGTGGGTGATTGTACAAGTTATAATTGAGTTGCCACAGTTTATCACAAATTTTGGCTTTAGTTTGTTCACGCGG
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| CDS seq | ATGGGAACTCCGGCGAGGGCCCCCCGTGAGGCGGCCGGACACCTTCCCTGCATCCTCCAGGACGCGGTTAGCAGAGTCTCCACCGCCCAGATCCTCCACTCGTCCGGCTACACCGCGGCGGAGCCAGCCGCCCTCCGCGCCCTCTCCGACATCGCCGGGCGCTACGTTGCCTCCCTGGGCCGCGCGGCCTCGGCCATCGCCGAGGCCCGCGGCCGCACGGAGCCCAACCTCGCGGACCTCACCCTCGCGCTCGAGGACCACGCGCTCGGCGGGTTCCCCGGCGCGTCCGACCCCGCCCGCCCCGTCCTCCGCTCCGGCGCGCTCTCGGAGCTCGCTGGCTTCGTCCGCGTGGTGCGGGAGGTGCCGTTCCCGAAGCCCGTGCCGCGGAGGGGAGGGGCCCCACGCGGCAAGGCGTGGGAGAGCTTCGCGGCGGCGGGGAAGGAGCCTCCGCCGAAGCACGTGCCGCGGTGGCTCCCGCGCTTTCCCGACAAGCCGGAGCCGGAGCCCGAACCAAAGGCGGCGTACGACGAGGCGACGGCGAGGTGGGAGGCGCGCGTTCGCCACGAGGAGGAGGCGAATGCAGAAGAAGCGGTGGTATTGAAGCCGAGCGTTGATGGCGGCGGGGAGCGCAGGGGAGTAGTACCGGAGAAGAGGGGGAAAGTGAGCTTCCGCGTGCGGGCGGAGAGGAAGAAGCGGCGGGTGGGATTGGACCAGCAGTGA
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| Protein seq | MGTPARAPREAAGHLPCILQDAVSRVSTAQILHSSGYTAAEPAALRALSDIAGRYVASLGRAASAIAEARGRTEPNLADLTLALEDHALGGFPGASDPARPVLRSGALSELAGFVRVVREVPFPKPVPRRGGAPRGKAWESFAAAGKEPPPKHVPRWLPRFPDKPEPEPEPKAAYDEATARWEARVRHEEEANAEEAVVLKPSVDGGGERRGVVPEKRGKVSFRVRAERKKRRVGLDQQ |
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| Function | Transcription initiation factor TFIID subunit 8 [UniProtKB/Swiss-Prot:Q9SYZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0699900 | Os02t0699900-01 | Chr02 | 28794171 | 28795262 | + | irgsp1_rep | ||
| CDS seq | ATGGGAACTCCGGCGAGGGCCCCCCGTGAGGCGGCCGGACACCTTCCCTGCATCCTCCAGGACGCGGTTAGCAGAGTCTCCACCGCCCAGATCCTCCACTCGTCCGGCTACACCGCGGCGGAGCCAGCCGCCCTCCGCGCCCTCTCCGACATCGCCGGGCGCTACGTTGCCTCCCTGGGCCGCGCGGCCTCGGCCATCGCCGAGGCCCGCGGCCGCACGGAGCCCAACCTCGCGGACCTCACCCTCGCGCTCGAGGACCACGCGCTCGGCGGGTTCCCCGGCGCGTCCGACCCCGCCCGCCCCGTCCTCCGCTCCGGCGCGCTCTCGGAGCTCGCTGGCTTCGTCCGCGTGGTGCGGGAGGTGCCGTTCCCGAAGCCCGTGCCGCGGAGGGGAGGGGCCCCACGCGGCAAGGCGTGGGAGAGCTTCGCGGCGGCGGGGAAGGAGCCTCCGCCGAAGCACGTGCCGCGGTGGCTCCCGCGCTTTCCCGACAAGCCGGAGCCGGAGCCCGAACCAAAGGCGGCGTACGACGAGGCGACGGCGAGGTGGGAGGCGCGCGTTCGCCACGAGGAGGAGGCGAATGCAGAAGAAGCGGTGGTATTGAAGCCGAGCGTTGATGGCGGCGGGGAGCGCAGGGGAGTAGTACCGGAGAAGAGGGGGAAAGTGAGCTTCCGCGTGCGGGCGGAGAGGAAGAAGCGGCGGGTGGGATTGGACCAGCAGTGA
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| Protein seq | MGTPARAPREAAGHLPCILQDAVSRVSTAQILHSSGYTAAEPAALRALSDIAGRYVASLGRAASAIAEARGRTEPNLADLTLALEDHALGGFPGASDPARPVLRSGALSELAGFVRVVREVPFPKPVPRRGGAPRGKAWESFAAAGKEPPPKHVPRWLPRFPDKPEPEPEPKAAYDEATARWEARVRHEEEANAEEAVVLKPSVDGGGERRGVVPEKRGKVSFRVRAERKKRRVGLDQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0699900 | RBH | 1.117227 | 1.135213 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47160 | RBH | 0.388297 | 0.349398 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030180 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030270 | RBH | 0.000000 | 0.0 | 0.491947 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030130 | RBH | 0.000000 | 1.564307 | 1.079215 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029720 | RBH | 0.031305 | 0.037212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029940 | RBH | 0.322748 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0468500 | RBH | 0 | 0.009141 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029710 | RBH | 0.069293 | 0.000000 | 0.272340 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0495500 | RBH | 0.6953535 | 2.307824 | 4.277246 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029760 | RBH | 0.067293 | 2.700788 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030090 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029940 | RBH | 0.000000 | 0.0 | 0.080664 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029610 | RBH | 0.045186 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030180 | RBH | 0.000000 | 0.0 | 0.205945 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029950 | RBH | 0.246738 | 0.0 | 0.776746 |
