Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0647300 | OGI:02073670 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:26052820-26054164 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTAAAGAAAGAACACAATATTTCACGGAAAGCACTTGGGACACGTGGCGTTGCTTTTCTGCGGGGCCCCACGGCAGAAGGAGAACTGGTGTGGACACTTTGGCAAGCAATTGTCCGCCAAACTCACCACCGCGCCGTCCTCCTTCAGCTGCCTCAGCTGGCTCGGCAGGGCCCCACAGAGAAAGTTCCCCTGCAGCATGAGCCTGACAAATGGGACCCACTTGTCCGTGGGCCCGTCCGCCGCGGCCCGAGCCGCGTACTGATCCGGTATGCCGCCGGCGAACATGTTCCGGTCAAGCCCGACCACCGCGAGCCGCGGCATCGCCGCGACGCATCCAGGCAGCCGCCCGGTCAGCCTGTTCCCGCCGAGGTCCAGCTCGACGAGCTGGCTCGACGCGCCGCCGTCGGGCGCCTCCTCGACGGCGCCGAGCTTGTTGGACCCCAGCCGCAGTTGCTGCAGCGACGGGTGCGCGAACGCGGCGCCTGGGACCGCGCCGGACACCGCATTGCCCGTGAGGTCGAGCACCCGCATCGCGGGCAGGGCGGCCAGCGCCGCGGCCTGCAGCGGCCCCGCGAAGCCGTTGCCGCGCGCCACGACGGAGACGAGCGAGCCCGGCAGCCGCCCGGGCGCGTCGAGGAGCGAGCCGGACAGCGCGTTGCCGCTCAGGTCGAGGTAGGCGAGCGAGCGCATCGCGTCCATCCGCGGCAGGGTCCCGGTGAGGCCGTTGTGCTGCAGCTCCATCCGTTTCAGGGAGCCCAGCGACGCGACCTGCGGCGGGATGGCGCCGGTGAGCGCGTTGCGGGAGAGGTAGAGCTCCTCGAGAGACGACGCCGGGGTGAAGAGCGACGCCGGTATCTCGCCGGAGAAGGCGTTCCCGGAGAGGTCGAGGACGCGGAGGCTCGGCGGCAGCGGGGACCCCGCCGGGAGCGCGCCGTGGAAGCGGTTGCTGGCGAGGGAGAGGAACGCGAGGAAAGGGAGCGAGGCGAGGACCGTGGCGGGGAGCGTGCCGGAGTACCCCGCCGGGTCGAGCGACACGCCGGTGACTCGGTGGTAGGAGGAGGAGTTGGGCGGCGCGTAGCAGCGGACGCCGCACGGGAAAGCGGCGCAGGGGTCGCGGGCGAAGTCCCACGACGCGAGGCAGGAGTAGGCCGGCACGGTGGCGGCGTCCACGGCCGATTTCAGCGACGCGAGCGCCGCGGCGTCCCCGGGGAATGTGGTGACCACCGCGTCCGCGGCAGCCACTCGTTGGAGCACGAGCAGCACCGCGGCGGCCAGCTCCAGCAGCAGGATCGGAGCAGCGGAGGAGGAAGCCATTGTTGCACTTGCACCGACGGAGGAGATCAT
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| CDS seq | ATGATCTCCTCCGTCGGTGCAAGTGCAACAATGGCTTCCTCCTCCGCTGCTCCGATCCTGCTGCTGGAGCTGGCCGCCGCGGTGCTGCTCGTGCTCCAACGAGTGGCTGCCGCGGACGCGGTGGTCACCACATTCCCCGGGGACGCCGCGGCGCTCGCGTCGCTGAAATCGGCCGTGGACGCCGCCACCGTGCCGGCCTACTCCTGCCTCGCGTCGTGGGACTTCGCCCGCGACCCCTGCGCCGCTTTCCCGTGCGGCGTCCGCTGCTACGCGCCGCCCAACTCCTCCTCCTACCACCGAGTCACCGGCGTGTCGCTCGACCCGGCGGGGTACTCCGGCACGCTCCCCGCCACGGTCCTCGCCTCGCTCCCTTTCCTCGCGTTCCTCTCCCTCGCCAGCAACCGCTTCCACGGCGCGCTCCCGGCGGGGTCCCCGCTGCCGCCGAGCCTCCGCGTCCTCGACCTCTCCGGGAACGCCTTCTCCGGCGAGATACCGGCGTCGCTCTTCACCCCGGCGTCGTCTCTCGAGGAGCTCTACCTCTCCCGCAACGCGCTCACCGGCGCCATCCCGCCGCAGGTCGCGTCGCTGGGCTCCCTGAAACGGATGGAGCTGCAGCACAACGGCCTCACCGGGACCCTGCCGCGGATGGACGCGATGCGCTCGCTCGCCTACCTCGACCTGAGCGGCAACGCGCTGTCCGGCTCGCTCCTCGACGCGCCCGGGCGGCTGCCGGGCTCGCTCGTCTCCGTCGTGGCGCGCGGCAACGGCTTCGCGGGGCCGCTGCAGGCCGCGGCGCTGGCCGCCCTGCCCGCGATGCGGGTGCTCGACCTCACGGGCAATGCGGTGTCCGGCGCGGTCCCAGGCGCCGCGTTCGCGCACCCGTCGCTGCAGCAACTGCGGCTGGGGTCCAACAAGCTCGGCGCCGTCGAGGAGGCGCCCGACGGCGGCGCGTCGAGCCAGCTCGTCGAGCTGGACCTCGGCGGGAACAGGCTGACCGGGCGGCTGCCTGGATGCGTCGCGGCGATGCCGCGGCTCGCGGTGGTCGGGCTTGACCGGAACATGTTCGCCGGCGGCATACCGGATCAGTACGCGGCTCGGGCCGCGGCGGACGGGCCCACGGACAAGTGGGTCCCATTTGTCAGGCTCATGCTGCAGGGGAACTTTCTCTGTGGGGCCCTGCCGAGCCAGCTGAGGCAGCTGAAGGAGGACGGCGCGGTGGTGAGTTTGGCGGACAATTGCTTGCCAAAGTGTCCACACCAGTTCTCCTTCTGCCGTGGGGCCCCGCAGAAAAGCAACGCCACGTGTCCCAAGTGCTTTCCGTGA
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| Protein seq | MISSVGASATMASSSAAPILLLELAAAVLLVLQRVAAADAVVTTFPGDAAALASLKSAVDAATVPAYSCLASWDFARDPCAAFPCGVRCYAPPNSSSYHRVTGVSLDPAGYSGTLPATVLASLPFLAFLSLASNRFHGALPAGSPLPPSLRVLDLSGNAFSGEIPASLFTPASSLEELYLSRNALTGAIPPQVASLGSLKRMELQHNGLTGTLPRMDAMRSLAYLDLSGNALSGSLLDAPGRLPGSLVSVVARGNGFAGPLQAAALAALPAMRVLDLTGNAVSGAVPGAAFAHPSLQQLRLGSNKLGAVEEAPDGGASSQLVELDLGGNRLTGRLPGCVAAMPRLAVVGLDRNMFAGGIPDQYAARAAADGPTDKWVPFVRLMLQGNFLCGALPSQLRQLKEDGAVVSLADNCLPKCPHQFSFCRGAPQKSNATCPKCFP |
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| Function | Leucine-rich repeat receptor-like protein kinase PXC2 [UniProtKB/Swiss-Prot:Q9LZV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0647300 | Os02t0647300-01 | Chr02 | 26052820 | 26054164 | - | irgsp1_rep | ||
| CDS seq | ATGATCTCCTCCGTCGGTGCAAGTGCAACAATGGCTTCCTCCTCCGCTGCTCCGATCCTGCTGCTGGAGCTGGCCGCCGCGGTGCTGCTCGTGCTCCAACGAGTGGCTGCCGCGGACGCGGTGGTCACCACATTCCCCGGGGACGCCGCGGCGCTCGCGTCGCTGAAATCGGCCGTGGACGCCGCCACCGTGCCGGCCTACTCCTGCCTCGCGTCGTGGGACTTCGCCCGCGACCCCTGCGCCGCTTTCCCGTGCGGCGTCCGCTGCTACGCGCCGCCCAACTCCTCCTCCTACCACCGAGTCACCGGCGTGTCGCTCGACCCGGCGGGGTACTCCGGCACGCTCCCCGCCACGGTCCTCGCCTCGCTCCCTTTCCTCGCGTTCCTCTCCCTCGCCAGCAACCGCTTCCACGGCGCGCTCCCGGCGGGGTCCCCGCTGCCGCCGAGCCTCCGCGTCCTCGACCTCTCCGGGAACGCCTTCTCCGGCGAGATACCGGCGTCGCTCTTCACCCCGGCGTCGTCTCTCGAGGAGCTCTACCTCTCCCGCAACGCGCTCACCGGCGCCATCCCGCCGCAGGTCGCGTCGCTGGGCTCCCTGAAACGGATGGAGCTGCAGCACAACGGCCTCACCGGGACCCTGCCGCGGATGGACGCGATGCGCTCGCTCGCCTACCTCGACCTGAGCGGCAACGCGCTGTCCGGCTCGCTCCTCGACGCGCCCGGGCGGCTGCCGGGCTCGCTCGTCTCCGTCGTGGCGCGCGGCAACGGCTTCGCGGGGCCGCTGCAGGCCGCGGCGCTGGCCGCCCTGCCCGCGATGCGGGTGCTCGACCTCACGGGCAATGCGGTGTCCGGCGCGGTCCCAGGCGCCGCGTTCGCGCACCCGTCGCTGCAGCAACTGCGGCTGGGGTCCAACAAGCTCGGCGCCGTCGAGGAGGCGCCCGACGGCGGCGCGTCGAGCCAGCTCGTCGAGCTGGACCTCGGCGGGAACAGGCTGACCGGGCGGCTGCCTGGATGCGTCGCGGCGATGCCGCGGCTCGCGGTGGTCGGGCTTGACCGGAACATGTTCGCCGGCGGCATACCGGATCAGTACGCGGCTCGGGCCGCGGCGGACGGGCCCACGGACAAGTGGGTCCCATTTGTCAGGCTCATGCTGCAGGGGAACTTTCTCTGTGGGGCCCTGCCGAGCCAGCTGAGGCAGCTGAAGGAGGACGGCGCGGTGGTGAGTTTGGCGGACAATTGCTTGCCAAAGTGTCCACACCAGTTCTCCTTCTGCCGTGGGGCCCCGCAGAAAAGCAACGCCACGTGTCCCAAGTGCTTTCCGTGA
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| Protein seq | MISSVGASATMASSSAAPILLLELAAAVLLVLQRVAAADAVVTTFPGDAAALASLKSAVDAATVPAYSCLASWDFARDPCAAFPCGVRCYAPPNSSSYHRVTGVSLDPAGYSGTLPATVLASLPFLAFLSLASNRFHGALPAGSPLPPSLRVLDLSGNAFSGEIPASLFTPASSLEELYLSRNALTGAIPPQVASLGSLKRMELQHNGLTGTLPRMDAMRSLAYLDLSGNALSGSLLDAPGRLPGSLVSVVARGNGFAGPLQAAALAALPAMRVLDLTGNAVSGAVPGAAFAHPSLQQLRLGSNKLGAVEEAPDGGASSQLVELDLGGNRLTGRLPGCVAAMPRLAVVGLDRNMFAGGIPDQYAARAAADGPTDKWVPFVRLMLQGNFLCGALPSQLRQLKEDGAVVSLADNCLPKCPHQFSFCRGAPQKSNATCPKCFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0647300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0534166 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027040 | RBH | 0.0 | 7.794425 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027151 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027000 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026590 | RBH | 0.0 | 0.041192 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026690 | RBH | 0.547277 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0446600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026510 | RBH | 0.0 | 0.278307 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0451800 | RBH | 0.154403 | 3.901783 | 0.9298015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026710 | RBH | 0.0 | 0.170400 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026400 | RBH | 0.0 | 2.637944 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027010 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026740 | RBH | 0.0 | 0.0 | 0.0 |
