Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0578000 | OGI:02063350 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:22215072-22216729 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACGATGAGACCCCGGCCAAGCTGGAGTATACCAACCAACACTAGAATAACAGTACACGCTAGTAGTATATATGTGCAGTGCCTGCAATCGGAGAGGCTGCATCTCGTACACCGCTGCATCTCGTTTCCACCAGCCGATCGATCGACGAACGACGACGTACGACGACATGGTCGCCGCCGACGAGATCAAGCCGCACGCGGTGTGCCTGCCGTTCCCGGCGCAGGGGCACGTCACGCCGATGATGAAGCTGGCCAAGGTGCTCCACTGCAGGGGCTTCCACGTCACGTTCGTCAACACCGAGTACAACCACCGCCGCCTCATCCGCTCCCGCGGCGCCGCCGCCGTGGCCGGGGTCCCGGGGTTCCGCTTCGCCACCATCCCCGACGGCCTCCCGCCGTCCGACGCCGACGCCACGCAGGACCCGGCGTCGATCTGCTACTCCACCATGACCACCTGCCTCCCGCACTTCACGAAGCTGCTCGTCGACCTCGACGGCAGCCGCGCGGCCGGGATCCCGCCCGTGACGTGCGTCGTGGCGGACGGCGTCATGAGCTTCGCCGTCGACGCCGCCAAGGAGCTCGGCGTGCCGTGCGCGCTGTTCTGGACGGCCAGCGCCTGCGGCTACATGGGCTACCGCCACCACCGGTTCTTCCTGGACGAGGGCCTCTCGCCTCTCAAAGGTATTCGACCATATGACACCACCACATGCATCGTCTTGTTAAAGTTAAACACCGTAACGAGGAACGAAGTGGTTCGCACGCATGCATGACGCGCGTTCTGTGGTGTGGTGTGGTGTTCGACGTACGTGAAGATGAAGAGCAGCTGACGAACGGGTTCCTGGACACGGTGGCGCGGCCGGCGCGCGGGATGAGCAAGCACATGCGCTACCGGGACTACCCGAGCTTCATCTGGACGACGGACCGCGGCGACATCCTGCTCAACTTCCTGCTCCACGAGGTGGAGCGCGCGGACCGCGCGGACGCCGTGATCCTCAACACGTTCGACGAGCTGGAGCAGCAGGCGCTCGACGCCATGCGCGCCATCCTCCCGCCAGTCTACACCATCGGCCCGCTCGGCAGCCTCGCCGACCGCGTCGTCGCCCCCGACGCCCCGGCCGCCGCCATCCGCCCCAGCCTCTGGAAGGAGGACACCGCCTGCCTGGCGTGGCTCGACGGCAGGGAGCCCCGGTCCGTGGTGTTCGTCAACTACGGGAGCATCACCACCATGTCCAACGACGAGCTTGTCGAATTCGCGTGGGGGCTCGCCAACTGCGGCCACGGCTTCCTGTGGATCGTCCGCCCCGACCTCGTCAGGGGCGACGCCGCCGTGCTGCCGCGGGAGTTCCTGGAGGCGGTGGCGGGGAGGGGCCTCCTGGCGAGCTGGTGCGAGCAGGAGGCCGTGCTGCGGCACGGGGCGGTGGGCGCGTTCCTGACGCACTGCGGTTGGAACTCGACGATGGAGAGCCTCAGCGCCGGGGTGCCGATGCTGTGCTGGCCCTTCTTCGCCGAGCAGCAGACCAACGCGCGCTACTCGTGCGCCGAGTGGGGCGTCGGGATGGAGGTGGGCGGCGGCGTGCGGCGGGAGGCGGTGGAGGCGACGATCAGGGAGGCCATGGGAGGGGAGAAGGGGAAGGAGATGAGGCGGAGGGCGGCGGAGT
More
|
||||||||||
| CDS seq | ATGGTGGCGAAGCGGAACCCCGGGACCCCGGCCACGGCGGCGGCGCCGCGGGAGCGGATGAGGCGGCGGTGGTTGTACTCGGTGTTGACGAACGTGACGTGGAAGCCCCTGCAGTGGAGCACCTTGGCCAGCTTCATCATCGGCGTGACGTGCCCCTGCGCCGGGAACGGCAGGCACACCGCGTGCGGCTTGATCTCGTCGGCGGCGACCATGTCGTCGTACGTCGTCGTTCGTCGATCGATCGGCTGGTGGAAACGAGATGCAGCGGTGTACGAGATGCAGCCTCTCCGATTGCAGGCACTGCACATATATACTACTAGCGTGTACTGTTATTCTAGTGTTGGTTGGTATACTCCAGCTTGGCCGGGGTCTCATCGTT |
||||||||||
| Protein seq | MVAKRNPGTPATAAAPRERMRRRWLYSVLTNVTWKPLQWSTLASFIIGVTCPCAGNGRHTACGLISSAATMSSYVVVRRSIGWWKRDAAVYEMQPLRLQALHIYTTSVYCYSSVGWYTPAWPGSHR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0578000 | Os02t0578000-01 | Chr02 | 22215072 | 22216729 | - | irgsp1_rep | ||
| CDS seq | ATGGTGGCGAAGCGGAACCCCGGGACCCCGGCCACGGCGGCGGCGCCGCGGGAGCGGATGAGGCGGCGGTGGTTGTACTCGGTGTTGACGAACGTGACGTGGAAGCCCCTGCAGTGGAGCACCTTGGCCAGCTTCATCATCGGCGTGACGTGCCCCTGCGCCGGGAACGGCAGGCACACCGCGTGCGGCTTGATCTCGTCGGCGGCGACCATGTCGTCGTACGTCGTCGTTCGTCGATCGATCGGCTGGTGGAAACGAGATGCAGCGGTGTACGAGATGCAGCCTCTCCGATTGCAGGCACTGCACATATATACTACTAGCGTGTACTGTTATTCTAGTGTTGGTTGGTATACTCCAGCTTGGCCGGGGTCTCATCGTT
More
|
|||||||
| Protein seq | MVAKRNPGTPATAAAPRERMRRRWLYSVLTNVTWKPLQWSTLASFIIGVTCPCAGNGRHTACGLISSAATMSSYVVVRRSIGWWKRDAAVYEMQPLRLQALHIYTTSVYCYSSVGWYTPAWPGSHR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0578000 | RBH | 0.000000 | 0.083732 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033830 | SBH | 1.336955 | 15.441492 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022450 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034220 | SBH | 0.000000 | 5.001235 | 0.754806 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022210 | RBH | 0.0 | 0.000000 | 0.0 |
