Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0572300 | OGI:02062610 | 10/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:21922917-21926203 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTCGCTCCTCTTCTCTTCTCCGACTCCTCCCCTCGCCGACTCGTCGCGCCGCCGGCGAGACGACCCTTCCGCCGCCTTGCTGGACTTGCCCTCGTCGTCTCCCTTCCACCCGGCTCCGGGCACGAACAGCGACAGGAGCCTCGCCACGGCGTTCCGCACGGCGCCGGCGTCGTGGGCGCTCCCCTCCCTGACGCGCACGGACGCCACCGCGCTCGTCACGTGCCTCAGCCTGTGCGACATGAGGATCTCGAGGCGGACGTGCTCCGGCAGCCGCAGCGCGAACCGCTCCATCCCGCCGCCGCCGCGCTCGTGCCCCGTCGAGTTCGACCGCGGGAGAGCCTGCCGCCCCGCCGCGCGACGGACCCCCGCGAGGCACTGGATCCTGATCCTCTCTTCCGCTTCCGCCTCCTCGCTGGCGCCGGCGTCGCCGATCACCACCACCGTCTCGTGAGCCGGCGGCGGCGACGCCGTGTCCTGCTCCAGCGAAGGCGGGGGAGGGGGCGGCGGCGGCGGCGCGTCGAGGACGTTGGCGCGGCAGAGCGGGCAGGTGACGTGCTTCTCGAGCCAGAGGCCGATGCACTCGGGATGGAACGCGTGCGGGCACGCCGGGAGGAGGCGGAGGGCGTCGTCGTCTTCGAACTCGAGGAGGCACACCGCGCACTCCAGCGGGTCGCCCCGCGCGTCCCCGATCCGGTGCCGCCTGGCGTCGCGGTACGACACCAGCGGCAGCGCCGCGATCTCCGCGGCGTCGAGCCCCGCCCTGTTGCCGCCCCCTCCCCCCCGGCGGGACCACTCCGACGACGACGTGTCCGCCAGCGCGGGCTCGCCGTCGTCGTCGTCGAGCGGCCGGAACAGGCGGAGGCACGCGAACGCGAGGAGGACGATGAACACGGGGAAGAAGACGGCCATGAAGAAGGAGATGCTGATCACGTCGGAGAAACTCAGGGAGTCGCCGCCAGATCGAGGCGGCGACGACGGCGCGGCGGCCACGGGCGCGATGGCCAGCAAAACGAAGGCGGCGACGTTGGCGGCGGCGACGCCCATGACGACGCCGCGCCGCCTTTGCTAGGGTTTGGGGGGGCAAGAACCCGCGGGTGTTGGTTGGGTGGAGTGGGCTTTTTCGATCGGGTCGGCTTGCTCGCTCGTCTTCCATTTAGAGGCCAAGCCATTGCGTGAGGGATACTCCAGATCAGAGCTGCTTCCGTTACACGTTTTCAGATTTGTGCGCTTTCAAGTTTGCAGCCTGTTCGTATTTACTACCAGTTTTAGCCTCCTTCGGAATTCGATTTTTGGGGGAGTATTTTAATGTGGCCCTTACAACTTTGGAAAATAAACGTGCATGCTAATATAGTACTCCCTCCGTTTCACAACGTAAGACTTTCTAGCATTGCCCATATACATATAGATGTTATCGATCGAGCATGGTACCGATGGACGATTGCACGTTAAGAATGAGCTGGTTCATCAATGAACAGATTACCTATTTGGGAGTATTTATACATTTATCGTCAAATTTTAACTACTGATGTAAATATAGTATAATTGTAATATAATTACAGTGTAACTTGTATATAACTTTCAGAAATCCTTGGGACATGCTAATTCCGTGAAAACGGAGGTAATAATGGTACCGAATCTCCTCTCATGTATGTGTTGTGATTTTTTTTCTACCTCTCTTGCATGAATTTTAAAGAAAATCGAACGGTTCAAAATTATATTGTAAGTTATATGTAAATTACAATGCAATTACACTACGATTGTACTATATTTACACATGTTAAAATTTTAGAAAAAAAATTATCGACAAATATGAAGTGGAATTGTGCCATAATATGTCAGAGATTTGAACTATGGTGGAAATTCACGACAGATGTGCAATACTCCTCAAGTTGCATACAAGATGTTCTTCATTGGGAAAGAAAAGGCCGCCTGCGGCGAATTCCTTTGGAAACCGAAGATACTAGCCCGATGCAAGTTTTTTTTTTTTGTATGTTCTTAGCAATAAGGGGCATCTATTTAATTTCGTTCCGACAATCTGGATCGCTGTGGCCGACAAAGCCAAGATGTGCGCCCTCTATGGACATATATTTTCATCCCTCAAGAAAATGTCCCCTCGCTGTTTGAATGTTATTGTTACCTATCTGGTTATAAAAAAAATATTTTTTTTGGATAACATAGATTAATATGAAATGGCATAACAAGCGGCTGGCTTGGCTGGACCGACCGATGCCGCTCTTTGATTAAACTTGCATATACATGTGTATAGGTTTGTGCATGTTGTAGAGTGTTTACGGCCGTTTTGAAACCTATGTAGATCTGTGACCACAATCTGTACGTAGAATCGGCGTGTGCTTTATGTAATTTCATTCCTAAATCTTAATGCATTTAGCCGATGTCCTATCGCTAGCCTAGCGAAAAAGATTACATATTAATTCTTTTCTTATTTCATGGTGCACACCCACACATCACTACACAAGTAACACCAGACACACGCAGTCGCAAATACACTAACTCACGCACAAATAAATGAAGACCAACATCATATCGCTTTAGTCTCACTATAAGATCCTACTAAAGCCAACCTACACGTGTGTAATTGAGTATAACTCTGGGGCTTTGCACCATCCCTACGGTGCACACAGTCATTTTAGTAACTGTTTAGTTTATTATGGTGTTAGATCAGAGTAGACATGATAACTTAAGAGCATCTTCAACAGTCTCTCTAAATTTGACTCTCCAAATGTCTATTTGGCCAACTCTCCATTCAATTTAGCAAGTCAAATTGTCTTTTACCCCAACAGCCTCTCCATTCGTCCTCTCTATTCTGAGTCTATGACAATTGGGTCCACATGTCAGCCTCTACACCTCCTTCTTCTCCCTCATCTTTCTCCCCTTCTCTCCAAACCCCCCTTCCCTCTCCCATCCGTCGCTGCCGCCCATCCCCATCCCCACCGCCGCTCGCGAGGAGGTGACGCAAGGAGGCGGGCGGCCACGCGCGGTGCTGCCGTGACGCGGGGAGGCGGGAGGCGAGACGCCGGCGGCTCGCGACGACGACCTCGACGCCGCTCGGGGCAGAGCTCGGCGGCGGCGGCAGCGGCGGGCGACGACCTCGACGGCGGATCTAGAGGGGGCGGCGGCGGAGCTCGGCGGGACGGTGGCCGGCCGCGCGACGACGGGGCGGCGGTGGCTGGCCGCAGCGACGAGAGGGCGGCGGCGCCCTCGTCACGGTGCGTGCCGCACTGCAGCGTGGAGAGAGAGGGTGGGAACAGGCGTGGGTCCCACAT
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| CDS seq | ATGTGGGACCCACGCCTGTTCCCACCCTCTCTCTCCACGCTGCAGTGCGGCACGCACCGTGACGAGGGCGCCGCCGCCCTCTCGTCGCTGCGGCCAGCCACCGCCGCCCCGTCGTCGCGCGGCCGGCCACCGTCCCGCCGAGCTCCGCCGCCGCCCCCTCTAGATCCGCCGTCGAGGTCGTCGCCCGCCGCTGCCGCCGCCGCCGAGCTCTGCCCCGAGCGGCGTCGAGGTCGTCGTCGCGAGCCGCCGGCGTCTCGCCTCCCGCCTCCCCGCGTCACGGCAGCACCGCGCGTGGCCGCCCGCCTCCTTGCGTCACCTCCTCGCGAGCGGCGCATCTCCTTCTTCATGGCCGTCTTCTTCCCCGTGTTCATCGTCCTCCTCGCGTTCGCGTGCCTCCGCCTGTTCCGGCCGCTCGACGACGACGACGGCGAGCCCGCGCTGGCGGACACGTCGTCGTCGGAGTGGTCCCGCCGGGGGGGAGGGGGCGGCAACAGGGCGGGGCTCGACGCCGCGGAGATCGCGGCGCTGCCGCTGGTGTCGTACCGCGACGCCAGGCGGCACCGGATCGGGGACGCGCGGGGCGACCCGCTGGAGTGCGCGGTGTGCCTCCTCGAGTTCGAAGACGACGACGCCCTCCGCCTCCTCCCGGCGTGCCCGCACGCGTTCCATCCCGAGTGCATCGGCCTCTGGCTCGAGAAGCACGTCACCTGCCCGCTCTGCCGCGCCAACGTCCTCGACGCGCCGCCGCCGCCGCCCCCTCCCCCGCCTTCGCTGGAGCAGGACACGGCGTCGCCGCCGCCGGCTCACGAGACGGTGGTGGTGATCGGCGACGCCGGCGCCAGCGAGGAGGCGGAAGCGGAAGAGAGGATCAGGATCCAGTGCCTCGCGGGGGTCCGTCGCGCGGCGGGGCGGCAGGCTCTCCCGCGGTCGAACTCGACGGGGCACGAGCGCGGCGGCGGCGGGATGGAGCGGTTCGCGCTGCGGCTGCCGGAGCACGTCCGCCTCGAGATCCTCATGTCGCACAGGCTGAGGCACGTGACGAGCGCGGTGGCGTCCGTGCGCGTCAGGGAGGGGAGCGCCCACGACGCCGGCGCCGTGCGGAACGCCGTGGCGAGGCTCCTGTCGCTGTTCGTGCCCGGAGCCGGGTGGAAGGGAGACGACGAGGGCAAGTCCAGCAAGGCGGCGGAAGGGTCGTCTCGCCGGCGGCGCGACGAGTCGGCGAGGGGAGGAGTCGGAGAAGAGAAGAGGAGCGAGTAA
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| Protein seq | MWDPRLFPPSLSTLQCGTHRDEGAAALSSLRPATAAPSSRGRPPSRRAPPPPPLDPPSRSSPAAAAAAELCPERRRGRRREPPASRLPPPRVTAAPRVAARLLASPPRERRISFFMAVFFPVFIVLLAFACLRLFRPLDDDDGEPALADTSSSEWSRRGGGGGNRAGLDAAEIAALPLVSYRDARRHRIGDARGDPLECAVCLLEFEDDDALRLLPACPHAFHPECIGLWLEKHVTCPLCRANVLDAPPPPPPPPPSLEQDTASPPPAHETVVVIGDAGASEEAEAEERIRIQCLAGVRRAAGRQALPRSNSTGHERGGGGMERFALRLPEHVRLEILMSHRLRHVTSAVASVRVREGSAHDAGAVRNAVARLLSLFVPGAGWKGDDEGKSSKAAEGSSRRRRDESARGGVGEEKRSE |
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| Function | E3 ubiquitin-protein ligase ATL6 [UniProtKB/Swiss-Prot:Q8RXX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0572300 | Os02t0572300-00 | Chr02 | 21922917 | 21926203 | - | irgsp1_rep | ||
| CDS seq | ATGTGGGACCCACGCCTGTTCCCACCCTCTCTCTCCACGCTGCAGTGCGGCACGCACCGTGACGAGGGCGCCGCCGCCCTCTCGTCGCTGCGGCCAGCCACCGCCGCCCCGTCGTCGCGCGGCCGGCCACCGTCCCGCCGAGCTCCGCCGCCGCCCCCTCTAGATCCGCCGTCGAGGTCGTCGCCCGCCGCTGCCGCCGCCGCCGAGCTCTGCCCCGAGCGGCGTCGAGGTCGTCGTCGCGAGCCGCCGGCGTCTCGCCTCCCGCCTCCCCGCGTCACGGCAGCACCGCGCGTGGCCGCCCGCCTCCTTGCGTCACCTCCTCGCGAGCGGCGCATCTCCTTCTTCATGGCCGTCTTCTTCCCCGTGTTCATCGTCCTCCTCGCGTTCGCGTGCCTCCGCCTGTTCCGGCCGCTCGACGACGACGACGGCGAGCCCGCGCTGGCGGACACGTCGTCGTCGGAGTGGTCCCGCCGGGGGGGAGGGGGCGGCAACAGGGCGGGGCTCGACGCCGCGGAGATCGCGGCGCTGCCGCTGGTGTCGTACCGCGACGCCAGGCGGCACCGGATCGGGGACGCGCGGGGCGACCCGCTGGAGTGCGCGGTGTGCCTCCTCGAGTTCGAAGACGACGACGCCCTCCGCCTCCTCCCGGCGTGCCCGCACGCGTTCCATCCCGAGTGCATCGGCCTCTGGCTCGAGAAGCACGTCACCTGCCCGCTCTGCCGCGCCAACGTCCTCGACGCGCCGCCGCCGCCGCCCCCTCCCCCGCCTTCGCTGGAGCAGGACACGGCGTCGCCGCCGCCGGCTCACGAGACGGTGGTGGTGATCGGCGACGCCGGCGCCAGCGAGGAGGCGGAAGCGGAAGAGAGGATCAGGATCCAGTGCCTCGCGGGGGTCCGTCGCGCGGCGGGGCGGCAGGCTCTCCCGCGGTCGAACTCGACGGGGCACGAGCGCGGCGGCGGCGGGATGGAGCGGTTCGCGCTGCGGCTGCCGGAGCACGTCCGCCTCGAGATCCTCATGTCGCACAGGCTGAGGCACGTGACGAGCGCGGTGGCGTCCGTGCGCGTCAGGGAGGGGAGCGCCCACGACGCCGGCGCCGTGCGGAACGCCGTGGCGAGGCTCCTGTCGCTGTTCGTGCCCGGAGCCGGGTGGAAGGGAGACGACGAGGGCAAGTCCAGCAAGGCGGCGGAAGGGTCGTCTCGCCGGCGGCGCGACGAGTCGGCGAGGGGAGGAGTCGGAGAAGAGAAGAGGAGCGAGTAA
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| Protein seq | MWDPRLFPPSLSTLQCGTHRDEGAAALSSLRPATAAPSSRGRPPSRRAPPPPPLDPPSRSSPAAAAAAELCPERRRGRRREPPASRLPPPRVTAAPRVAARLLASPPRERRISFFMAVFFPVFIVLLAFACLRLFRPLDDDDGEPALADTSSSEWSRRGGGGGNRAGLDAAEIAALPLVSYRDARRHRIGDARGDPLECAVCLLEFEDDDALRLLPACPHAFHPECIGLWLEKHVTCPLCRANVLDAPPPPPPPPPSLEQDTASPPPAHETVVVIGDAGASEEAEAEERIRIQCLAGVRRAAGRQALPRSNSTGHERGGGGMERFALRLPEHVRLEILMSHRLRHVTSAVASVRVREGSAHDAGAVRNAVARLLSLFVPGAGWKGDDEGKSSKAAEGSSRRRRDESARGGVGEEKRSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0572300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g36320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021720 | RBH | 0.0 | 3.602048 | 0.355934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0359300 | RBH | 0 | 10.913492 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0386600 | RBH | 0.0135835 | 0.1743885 | 0.0493795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021840 | RBH | 0.0 | 0.0 | 0.0 |
