Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0553000 | OGI:02060120 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:20857044-20858995 | ||||||||
| Gene Symbol | XIK1, OsXIK1 | ||||||||||
| DNA seq | GCCATGTAGTCAGAGAAAATGGTAGCCATGTATACCATCCATCATAAATCTTAGAGATTCGTATTACAATTTACAACAAAGCAGATTGATCAAACAAGGTAGCATAGTAAGCACAAGAACATCACCAGCAACACGTATTAGGGTCGTGTACAAAATGCAGGTATGTTTGACAACCACGCAATTAACACCAACGAAGTAGAGAGAACACAAATCATCATACAAGTGATGCTTTATAATACTTGACAAGTTGACATTAACAGGTGCAATAGACTGACCTACCTATGGTGTGAATTGCCACATTCTTGTGGGGAAAAAACCCTGAGCAACATGAGAAACAGCAATTTTCTGACAACATTCACTGGTAGTACGCAGGGATGATTATGTCAACATGTAGATGGTCAGGATTGCTAGGTCCTTCAGCTGTAGAAAACATCCGAGTTACATGTTGCATTGTTGGACGACGTGATGGGTTGGGGTCCAAGCACTGGACAGCAGCCATGATCACTCTAAATATTTCACTTGCTGTCTCAGCTTTAGGAAGTGGGATCCGGGCGTCCAACAAATCCTTCAATGTTGTACTTTCCTTGGCCATGGAGAAGGACAAAAGGAAATCACCAGGATGATGCCCCATGAACAGCTCAAAGACAAGCACTCCGAAGCTATAAACATCGCATTTCTCTGTCACCCTTGTTGTGTATGCAAGCTCTGCCATGTAAAAATTTAAGACTTTGTTTCAACAAATTTGCATATGTAAATAGTATAGAAGGCATTCGATGCTATTTTTACAAAATGAGATGCAAATTTGCCTAATTGTATCTAATATACTACTATGAATCAAAGATATACTAGTAAGACGAATACTTTAACAGTTAGCTCGAATATTTGTCAGAGTTACAAACTAATATACAAAAGGACAGAGCAACTGATTTAGTACAAATTTACCTGGGGCAAGGTAACCTTTGGTCCCAGCAAGCTTCGTGCAGTTCGATGCCTCCACATCTAGAACTTTGGCTATACCAAAATCAGATATGCAAGCTCTGAATTCCTGATCGAGCAAAATGTTGTTGCTTGTTATATCTCGATGGACTATGGGTGCAAAGCAATCATGATGTATGTAAGACAAAGCATTAGCAACATCTTTGACAATACTTATCCTTCGCATCCAATCCAATTCAATCGCAATGTTATGGTTCTCCAAATATCTTGACAAGCTTCCTCTATCCATGTATTCGTAGACAAGAAATTTGCCGTGGACTGCAGAACAGTACCCAAAGAGCTTCACAATATTTCGATGCCGAATTCTCGTCAAAGCATCTATTTCTCGCTTAAATATTAGCTCGTCATATTCCATCATATGAATTTTCTTTACTGCAAATATCTCACCTGTTGGTAACTGAGCTCTGTAGACAGATCCATTTCCCCCAGTTCCAATGCAGTGAGTTTCGTTGAAATATTTTGTTGTTTCAAAAATCTGCCTGCATGCTTCTCCTCCCTCAAAGTTCCAGACTGAAAACACTTTTGCGTCTCCAACTCCATTTTCGCTTTGTTCCCCATATTTCTTCCTTTTGCATTGCCATGCCACTAGTGACATGATAAACACAATAGACATGCCAGCAGCACCAACTATACCAAGTAAAATGGATTTGAATTTCTTTCCCTGGCCACCTTTCTGATTAAGGTCGCAAGGGGGTAAAGCTTTGACTGTACCACACAACTTTTTATTGTGCATGAACCACTCAATCGGAGCTTCTTCCAAGAAGTTAATATGTGGCACTGGCCCTTCCAAATTATTATATGATACATCCAGGGATGAGAGACTGATCATACCCTGAAATGATGATGGTATGCTGCCGTTCAGTGTGTTGTGTGAAAGATTCAGAGCTTCGAGCATGCTCAAAGCACCCAGCTGACTTGGTATGATCCCAGAAAATGAATTGTCACTTAGATCCAAC
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| CDS seq | ATGCTCGAAGCTCTGAATCTTTCACACAACACACTGAACGGCAGCATACCATCATCATTTCAGGGTATGATCAGTCTCTCATCCCTGGATGTATCATATAATAATTTGGAAGGGCCAGTGCCACATATTAACTTCTTGGAAGAAGCTCCGATTGAGTGGTTCATGCACAATAAAAAGTTGTGTGGTACAGTCAAAGCTTTACCCCCTTGCGACCTTAATCAGAAAGGTGGCCAGGGAAAGAAATTCAAATCCATTTTACTTGGTATAGTTGGTGCTGCTGGCATGTCTATTGTGTTTATCATGTCACTAGTGGCATGGCAATGCAAAAGGAAGAAATATGGGGAACAAAGCGAAAATGGAGTTGGAGACGCAAAAGTGTTTTCAGTCTGGAACTTTGAGGGAGGAGAAGCATGCAGGCAGATTTTTGAAACAACAAAATATTTCAACGAAACTCACTGCATTGGAACTGGGGGAAATGGATCTGTCTACAGAGCTCAGTTACCAACAGGTGAGATATTTGCAGTAAAGAAAATTCATATGATGGAATATGACGAGCTAATATTTAAGCGAGAAATAGATGCTTTGACGAGAATTCGGCATCGAAATATTGTGAAGCTCTTTGGGTACTGTTCTGCAGTCCACGGCAAATTTCTTGTCTACGAATACATGGATAGAGGAAGCTTGTCAAGATATTTGGAGAACCATAACATTGCGATTGAATTGGATTGGATGCGAAGGATAAGTATTGTCAAAGATGTTGCTAATGCTTTGTCTTACATACATCATGATTGCTTTGCACCCATAGTCCATCGAGATATAACAAGCAACAACATTTTGCTCGATCAGGAATTCAGAGCTTGCATATCTGATTTTGGTATAGCCAAAGTTCTAGATGTGGAGGCATCGAACTGCACGAAGCTTGCTGGGACCAAAGGTTACCTTGCCCCAGAGCTTGCATACACAACAAGGGTGACAGAGAAATGCGATGTTTATAGCTTCGGAGTGCTTGTCTTTGAGCTGTTCATGGGGCATCATCCTGGTGATTTCCTTTTGTCCTTCTCCATGGCCAAGGAAAGTACAACATTGAAGGATTTGTTGGACGCCCGGATCCCACTTCCTAAAGCTGAGACAGCAAGTGAAATATTTAGAGTGATCATGGCTGCTGTCCAGTGCTTGGACCCCAACCCATCACGTCGTCCAACAATGCAACATGTAACTCGGATGTTTTCTACAGCTGAAGGACCTAGCAATCCTGACCATCTACATGTTGACATAATCATCCCTGCGTACTACCAGTGA
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| Protein seq | MLEALNLSHNTLNGSIPSSFQGMISLSSLDVSYNNLEGPVPHINFLEEAPIEWFMHNKKLCGTVKALPPCDLNQKGGQGKKFKSILLGIVGAAGMSIVFIMSLVAWQCKRKKYGEQSENGVGDAKVFSVWNFEGGEACRQIFETTKYFNETHCIGTGGNGSVYRAQLPTGEIFAVKKIHMMEYDELIFKREIDALTRIRHRNIVKLFGYCSAVHGKFLVYEYMDRGSLSRYLENHNIAIELDWMRRISIVKDVANALSYIHHDCFAPIVHRDITSNNILLDQEFRACISDFGIAKVLDVEASNCTKLAGTKGYLAPELAYTTRVTEKCDVYSFGVLVFELFMGHHPGDFLLSFSMAKESTTLKDLLDARIPLPKAETASEIFRVIMAAVQCLDPNPSRRPTMQHVTRMFSTAEGPSNPDHLHVDIIIPAYYQ |
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| Function | MDIS1-interacting receptor like kinase 2 [UniProtKB/Swiss-Prot:Q8VZG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0553000 | Os02t0553000-01 | Chr02 | 20857044 | 20858995 | - | irgsp1_rep | ||
| CDS seq | ATGCTCGAAGCTCTGAATCTTTCACACAACACACTGAACGGCAGCATACCATCATCATTTCAGGGTATGATCAGTCTCTCATCCCTGGATGTATCATATAATAATTTGGAAGGGCCAGTGCCACATATTAACTTCTTGGAAGAAGCTCCGATTGAGTGGTTCATGCACAATAAAAAGTTGTGTGGTACAGTCAAAGCTTTACCCCCTTGCGACCTTAATCAGAAAGGTGGCCAGGGAAAGAAATTCAAATCCATTTTACTTGGTATAGTTGGTGCTGCTGGCATGTCTATTGTGTTTATCATGTCACTAGTGGCATGGCAATGCAAAAGGAAGAAATATGGGGAACAAAGCGAAAATGGAGTTGGAGACGCAAAAGTGTTTTCAGTCTGGAACTTTGAGGGAGGAGAAGCATGCAGGCAGATTTTTGAAACAACAAAATATTTCAACGAAACTCACTGCATTGGAACTGGGGGAAATGGATCTGTCTACAGAGCTCAGTTACCAACAGGTGAGATATTTGCAGTAAAGAAAATTCATATGATGGAATATGACGAGCTAATATTTAAGCGAGAAATAGATGCTTTGACGAGAATTCGGCATCGAAATATTGTGAAGCTCTTTGGGTACTGTTCTGCAGTCCACGGCAAATTTCTTGTCTACGAATACATGGATAGAGGAAGCTTGTCAAGATATTTGGAGAACCATAACATTGCGATTGAATTGGATTGGATGCGAAGGATAAGTATTGTCAAAGATGTTGCTAATGCTTTGTCTTACATACATCATGATTGCTTTGCACCCATAGTCCATCGAGATATAACAAGCAACAACATTTTGCTCGATCAGGAATTCAGAGCTTGCATATCTGATTTTGGTATAGCCAAAGTTCTAGATGTGGAGGCATCGAACTGCACGAAGCTTGCTGGGACCAAAGGTTACCTTGCCCCAGAGCTTGCATACACAACAAGGGTGACAGAGAAATGCGATGTTTATAGCTTCGGAGTGCTTGTCTTTGAGCTGTTCATGGGGCATCATCCTGGTGATTTCCTTTTGTCCTTCTCCATGGCCAAGGAAAGTACAACATTGAAGGATTTGTTGGACGCCCGGATCCCACTTCCTAAAGCTGAGACAGCAAGTGAAATATTTAGAGTGATCATGGCTGCTGTCCAGTGCTTGGACCCCAACCCATCACGTCGTCCAACAATGCAACATGTAACTCGGATGTTTTCTACAGCTGAAGGACCTAGCAATCCTGACCATCTACATGTTGACATAATCATCCCTGCGTACTACCAGTGA
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| Protein seq | MLEALNLSHNTLNGSIPSSFQGMISLSSLDVSYNNLEGPVPHINFLEEAPIEWFMHNKKLCGTVKALPPCDLNQKGGQGKKFKSILLGIVGAAGMSIVFIMSLVAWQCKRKKYGEQSENGVGDAKVFSVWNFEGGEACRQIFETTKYFNETHCIGTGGNGSVYRAQLPTGEIFAVKKIHMMEYDELIFKREIDALTRIRHRNIVKLFGYCSAVHGKFLVYEYMDRGSLSRYLENHNIAIELDWMRRISIVKDVANALSYIHHDCFAPIVHRDITSNNILLDQEFRACISDFGIAKVLDVEASNCTKLAGTKGYLAPELAYTTRVTEKCDVYSFGVLVFELFMGHHPGDFLLSFSMAKESTTLKDLLDARIPLPKAETASEIFRVIMAAVQCLDPNPSRRPTMQHVTRMFSTAEGPSNPDHLHVDIIIPAYYQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0553000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0430000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006530 | SBH | 0.232102 | 37.224957 | 13.029906 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001280 | SBH | 0.0 | 2.678046 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025910 | SBH | 0.133952 | 4.585774 | 3.129041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009350 | SBH | 0.044456 | 0.018416 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009490 | SBH | 0.486751 | 0.0 | 1.492584 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0344500 | RBH | 0.051288 | 0.072233 | 0.008266 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020380 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0369700 | RBH | 0.00825 | 0.0766175 | 0.0391675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006840 | SBH | 0.070678 | 0.223089 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009390 | SBH | 0.567211 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006700 | SBH | 4.606554 | 16.936317 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001270 | SBH | 0.000000 | 1.375763 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001240 | SBH | 0.0 | 0.0 | 0.177199 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001210 | SBH | 0.0 | 10.870837 | 0.0 |
