Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0536300 | OGI:02057120 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:19789458-19791017 | ||||||||
| Gene Symbol | OsFbox093, OsFbox93, Os_F0270 | ||||||||||
| DNA seq | ATGCACATGCTGTCAAGGAAAAAACCAAGTTCCATCACAATCGAGTTTTCCTGTGGGAATTATTATAAGATTCCATCGTGCCTCTTCTCTATCAGTGATTTGGAATATCTACGGATAGAAAGATGCATCATCAGCTTGCCTCGGCAGTTTGAAGGTTTTAAGCAGCTAACTGTTCTGAATCTGAAATATTTCTCCTCAACAGACAGTGACATAAATAATCTGATCTCCTCATGCCCTCGGCTGAATACATTGCGTTTGAAATATTTTAAGGGTATCAATCGTCTCCGAATTCAAGCTCAGGCAGTACAGGTTTTAGAGGTTAAAGGGTCCTTTGAAGACTTTCATCTGCATGCACCTAACCTGTCCAATGTGTATGTTACACTCAACAAAACAAAAGTTGCAGACAGGAGTAAAAACTATATGATGCAAGCTTTTGTGAGCCTAACTGGAATAGAAGCACTTGTTATGAAAAGATGTATGGTTGCGTTGCCTCAGACGTTTGAAGGTTTCAAGCGGCTATCTGTCTTGAATCTGAAATATATATACTCAACAGACGCTGACATAGCAAATCTGATCTCCTCATGCCCATGGCTGAAAACACTGCATTTGAAATATTTTGAGGGTATCAGTTGTCTCCGTATTCAAGCTCCGGCACTGCAGCATTTAGAGGTTCAAGGGAATTTCGAAGACTTGCATCTGCATGCACCTAATCTGTTGTATCTTACACTCGACAAAACAGAAACAGAACAATGTGATGCTGTTGCGGGTGACAAGAAAAATTATCCCAAGGAAGCTTTTGTCAGCCTAACTAGTATAGAACTTTCTATAAATGGCCCTTCCTTGACGGTAACATATTATTAATTTTGTGCTATTAAACTATCATGCTGATTAAATTTTATTGATAATTCTTATTGGTTTTTATTCTGATGGTAGTATCTATCGGAAGGGTGCTTGTTGACCAAACCCCCAGGCGTGCTTGATCGTCTGAGGAAGGTTAGTATTGGGGAGTGCTTTTGGCACTGGACAGGTCTTGGGTGCTTGTTCAATTTTTCGGAATGCCCCTATGTTGAGAGAACTCGAGATACAGGTATGCCTCCCTCCACTCTCCACTCTCCTGCAGTTAACTTGCATTTCTTTCCATCCATAATTACTAGGCTGCATTGCCTCTTGTGTTCTTTGTGGTTTTTGTTAATGTCTTTACTAGTTTTTTGCTTCTAACTTCTACAGAGCTTCTCTCGACCGGACGATTCTTGGAGTCAGCCAATATGGGATCATGATCAGACGGAGATCAAAGAGCCTACCTTGCATCACCTCCTGACGGCGACGATCACCGGTTTCGTGGGGCTGGAATACGAGGTTGATCTCGTTAGGCTGCTCCTGAGATGGTCACCTGCATTGGAGGAACTGAAGGTGGTCAGGGACGACGAGGATGTCCTGAACGATGCGTGCATGTGCGAGTCTCTTACCAAGTTACTGGCTCTCCCGAGGGCTTCTACCAAAGCCAAGATCATTGCCATCTGATCTGATCCTTTATACAGCTATATACCTCATGTTATTGGC
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| CDS seq | ATGCACATGCTGTCAAGGAAAAAACCAAGTTCCATCACAATCGAGTTTTCCTGTGGGAATTATTATAAGATTCCATCGTGCCTCTTCTCTATCAGTGATTTGGAATATCTACGGATAGAAAGATGCATCATCAGCTTGCCTCGGCAGTTTGAAGGTTTTAAGCAGCTAACTGTTCTGAATCTGAAATATTTCTCCTCAACAGACAGTGACATAAATAATCTGATCTCCTCATGCCCTCGGCTGAATACATTGCGTTTGAAATATTTTAAGGGTATCAATCGTCTCCGAATTCAAGCTCAGGCAGTACAGGTTTTAGAGGTTAAAGGGTCCTTTGAAGACTTTCATCTGCATGCACCTAACCTGTCCAATGTGTATGTTACACTCAACAAAACAAAAGTTGCAGACAGGAGTAAAAACTATATGATGCAAGCTTTTGTGAGCCTAACTGGAATAGAAGCACTTGTTATGAAAAGATGTATGGTTGCGTTGCCTCAGACGTTTGAAGGTTTCAAGCGGCTATCTGTCTTGAATCTGAAATATATATACTCAACAGACGCTGACATAGCAAATCTGATCTCCTCATGCCCATGGCTGAAAACACTGCATTTGAAATATTTTGAGGGTATCAGTTGTCTCCGTATTCAAGCTCCGGCACTGCAGCATTTAGAGGTTCAAGGGAATTTCGAAGACTTGCATCTGCATGCACCTAATCTGTTGTATCTTACACTCGACAAAACAGAAACAGAACAATGTGATGCTGTTGCGGGTGACAAGAAAAATTATCCCAAGGAAGCTTTTGTCAGCCTAACTAGTATAGAACTTTCTATAAATGGCCCTTCCTTGACGTATCTATCGGAAGGGTGCTTGTTGACCAAACCCCCAGGCGTGCTTGATCGTCTGAGGAAGGTTAGTATTGGGGAGTGCTTTTGGCACTGGACAGGTCTTGGGTGCTTGTTCAATTTTTCGGAATGCCCCTATGTTGAGAGAACTCGAGATACAGAGCTTCTCTCGACCGGACGATTCTTGGAGTCAGCCAATATGGGATCATGA
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| Protein seq | MHMLSRKKPSSITIEFSCGNYYKIPSCLFSISDLEYLRIERCIISLPRQFEGFKQLTVLNLKYFSSTDSDINNLISSCPRLNTLRLKYFKGINRLRIQAQAVQVLEVKGSFEDFHLHAPNLSNVYVTLNKTKVADRSKNYMMQAFVSLTGIEALVMKRCMVALPQTFEGFKRLSVLNLKYIYSTDADIANLISSCPWLKTLHLKYFEGISCLRIQAPALQHLEVQGNFEDLHLHAPNLLYLTLDKTETEQCDAVAGDKKNYPKEAFVSLTSIELSINGPSLTYLSEGCLLTKPPGVLDRLRKVSIGECFWHWTGLGCLFNFSECPYVERTRDTELLSTGRFLESANMGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0536300 | Os02t0536300-00 | Chr02 | 19789458 | 19791017 | + | irgsp1_rep | ||
| CDS seq | ATGCACATGCTGTCAAGGAAAAAACCAAGTTCCATCACAATCGAGTTTTCCTGTGGGAATTATTATAAGATTCCATCGTGCCTCTTCTCTATCAGTGATTTGGAATATCTACGGATAGAAAGATGCATCATCAGCTTGCCTCGGCAGTTTGAAGGTTTTAAGCAGCTAACTGTTCTGAATCTGAAATATTTCTCCTCAACAGACAGTGACATAAATAATCTGATCTCCTCATGCCCTCGGCTGAATACATTGCGTTTGAAATATTTTAAGGGTATCAATCGTCTCCGAATTCAAGCTCAGGCAGTACAGGTTTTAGAGGTTAAAGGGTCCTTTGAAGACTTTCATCTGCATGCACCTAACCTGTCCAATGTGTATGTTACACTCAACAAAACAAAAGTTGCAGACAGGAGTAAAAACTATATGATGCAAGCTTTTGTGAGCCTAACTGGAATAGAAGCACTTGTTATGAAAAGATGTATGGTTGCGTTGCCTCAGACGTTTGAAGGTTTCAAGCGGCTATCTGTCTTGAATCTGAAATATATATACTCAACAGACGCTGACATAGCAAATCTGATCTCCTCATGCCCATGGCTGAAAACACTGCATTTGAAATATTTTGAGGGTATCAGTTGTCTCCGTATTCAAGCTCCGGCACTGCAGCATTTAGAGGTTCAAGGGAATTTCGAAGACTTGCATCTGCATGCACCTAATCTGTTGTATCTTACACTCGACAAAACAGAAACAGAACAATGTGATGCTGTTGCGGGTGACAAGAAAAATTATCCCAAGGAAGCTTTTGTCAGCCTAACTAGTATAGAACTTTCTATAAATGGCCCTTCCTTGACGTATCTATCGGAAGGGTGCTTGTTGACCAAACCCCCAGGCGTGCTTGATCGTCTGAGGAAGGTTAGTATTGGGGAGTGCTTTTGGCACTGGACAGGTCTTGGGTGCTTGTTCAATTTTTCGGAATGCCCCTATGTTGAGAGAACTCGAGATACAGAGCTTCTCTCGACCGGACGATTCTTGGAGTCAGCCAATATGGGATCATGA
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| Protein seq | MHMLSRKKPSSITIEFSCGNYYKIPSCLFSISDLEYLRIERCIISLPRQFEGFKQLTVLNLKYFSSTDSDINNLISSCPRLNTLRLKYFKGINRLRIQAQAVQVLEVKGSFEDFHLHAPNLSNVYVTLNKTKVADRSKNYMMQAFVSLTGIEALVMKRCMVALPQTFEGFKRLSVLNLKYIYSTDADIANLISSCPWLKTLHLKYFEGISCLRIQAPALQHLEVQGNFEDLHLHAPNLLYLTLDKTETEQCDAVAGDKKNYPKEAFVSLTSIELSINGPSLTYLSEGCLLTKPPGVLDRLRKVSIGECFWHWTGLGCLFNFSECPYVERTRDTELLSTGRFLESANMGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0536300 | RBH | 0.167191 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33310 | RBH | 0.094595 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0537200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020050 | RBH | 0.0 | 0.0 | 0.470681 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020170 | RBH | 0.0 | 0.0 | 0.249056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020120 | RBH | 0.0 | 0.0 | 0.516859 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019910 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019840 | RBH | 0.000000 | 2.219209 | 4.082078 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0328200 | SBH | 4.4485055 | 6.915801 | 15.38437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019540 | RBH | 0.0 | 0.000000 | 0.059683 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0349800 | SBH | 3.5453055 | 6.464018 | 26.215473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019820 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020230 | SBH | 4.802734 | 6.028872 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019950 | RBH | 0.215838 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019730 | RBH | 0.0 | 1.082487 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020180 | RBH | 0.122391 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019890 | SBH | 0.897170 | 7.544162 | 5.084319 |
