Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0261400 | OGI:02026200 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:9142458-9144360 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGTCAATTTGGACCTGATTTTGGTGGTGTTACGAAGAAGAGTTTCTTACACTTGAAGAAAATTGAACTTGTTGGTTTACCGGAACTTGTGGAGTGGGTTGGGGGAGATCATTGCCATATGTTTTCAAAGCTTTTAAGCATCAGATGTGAAGATTGTCCTAATCTCACCGTGCTCCTGCTGCCATCGTTTGAGTGCTCTATCTCTGACACAAAAGACATAAACACCATATGGTTTCCCAACTTGTGTTCTCTTAAGATTCGAAATTGCCCCAGGTTGTCACTGCCTCCCCTGCCTCACACTTCCATGCTAACCTGTGTTACTGTGAAAGAAGATGATACAGATTTGATGTATTTTGATGGAAAAAGTCTGAGGTTAAATCGCTACGGTAGTGCTTTGGCCTTCCATAACCTGAACAAAGTAGAAGATATGGAAATTGTAGACATGCCGCTCGTTTCATGGACTGGTCTCCAAAAGCTGAACTCCCCCAGAAGCATGCAATCGATGGGTCTGCTCTCAAACCTCTCATCTCTCACTCATCTAGAACTAGTAAATTGTGATAACTTAAGAGTCGATGGTTTTGATCCTCTCACCACATGCAACCTCAAGGAAATGGCAGTTTACAATAGTAAAAACCATCACCCCTCCATAGCAGCGGATTTGTTCTCAGTGGTGGCAATGATGGAAGTAATACCTGCAGGTTCCTTCCAGCAGCTGGAACAACTCTCGGTGGACAGCATCTCAGCAGTGCTTGTTGCCCCCATTTGCAACCTCCTGGCTAGCACCCTCTGTAAGATGGAATTCCCGTATGACATGTGGATGGAAAGCTTCACCGAAACGCAGGAGGAGGCGCTTCAGCTCCTCACCTCCCTCCAATGCCTAGGATTCTATGTGTGTCCCCGTCTGCAGTCCCTCCCAGAAGGGTTACATCGCCTTTCTTCACTTCGTGAACTAATTATCCATAAATGTCCTGAAATCAGAGCGCTTCCCAAGGAAGGGTTCCCCGCATCACTGAGATATGTATTTGCATACGAGGGCATCAGTGTTGATCTAAAGGATCAACTCAAGAAACTAAAAGCATCAACGCCAGGTTTACGTGGTAAAGCATGTCCTCTCCTAATTCCTGTATTTGTCCCTTATTAAATCTGTAAATTTTCATATTTAACTAATTTTTGCCTGTTTTGCTATTAATGATTTACCTCATGTGGAGTAGTGGTTTCATCGCTAACCAACTTAGTAAATTAATGCGAGCTACACAAGATTACATGAAGGCCAGCAATCTAGAGGTCAGTTCATGGAAAACCAAGGCAGTCCTTCATTTTGTGGTTTCTTTCTAAGTTCAGGCAGCTGCTTTTAGTTTAGTCCATATGGTTGAGCTGTTTTCTTTATCTGCTATCTGAATCAATGCTATATTAGTTAGCTTACATTCTATATATCCTTACATATTTTTTTCATCTCAAACAGCATCACAACAGTTTGCACGCATGCAGCTGCGTAATAAATCTGAAACCCGCCCGCCCTGCTATGGTCTGATGTCATCAGATCCAACAGCATCAATTAAGCCATGGTGGTCAGTAGCATCACTTCTGCTCATATCGTTTGTTTTTTTTTCTTTTCTGTAGTTTCTCCTGAAACTAGTACTCCATCCATTCTAAAATGGCAAAATATATCAATATCAACGTAGTACTACGAATGTAGACAGCCTTCATCGTATTAGGTGGTGTCTAATCTATTATTAGGACACTATATTTTGAAACGGAGGGGATAGCTTTTGTAATTTCTCTCGATGTCCTGAAATCAGATCGCTGCTCAAGGAGCATTCCTCTCTTCATTGAGATATCCAAGGGCAAGACCGCAAGAGGATGCAGCATCGTCTACAGGATCAACTCAAGAAAATAGCTAG
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| CDS seq | ATGCGTCAATTTGGACCTGATTTTGGTGGTGTTACGAAGAAGAGTTTCTTACACTTGAAGAAAATTGAACTTGTTGGTTTACCGGAACTTGTGGAGTGGGTTGGGGGAGATCATTGCCATATGTTTTCAAAGCTTTTAAGCATCAGATGTGAAGATTGTCCTAATCTCACCGTGCTCCTGCTGCCATCGTTTGAGTGCTCTATCTCTGACACAAAAGACATAAACACCATATGGTTTCCCAACTTGTGTTCTCTTAAGATTCGAAATTGCCCCAGGTTGTCACTGCCTCCCCTGCCTCACACTTCCATGCTAACCTGTGTTACTGTGAAAGAAGATGATACAGATTTGATGTATTTTGATGGAAAAAGTCTGAGGTTAAATCGCTACGGTAGTGCTTTGGCCTTCCATAACCTGAACAAAGTAGAAGATATGGAAATTGTAGACATGCCGCTCGTTTCATGGACTGGTCTCCAAAAGCTGAACTCCCCCAGAAGCATGCAATCGATGGGTCTGCTCTCAAACCTCTCATCTCTCACTCATCTAGAACTAGTAAATTGTGATAACTTAAGAGTCGATGGTTTTGATCCTCTCACCACATGCAACCTCAAGGAAATGGCAGTTTACAATAGTAAAAACCATCACCCCTCCATAGCAGCGGATTTGTTCTCAGTGGTGGCAATGATGGAAGTAATACCTGCAGGTTCCTTCCAGCAGCTGGAACAACTCTCGGTGGACAGCATCTCAGCAGTGCTTGTTGCCCCCATTTGCAACCTCCTGGCTAGCACCCTCTGTAAGATGGAATTCCCGTATGACATGTGGATGGAAAGCTTCACCGAAACGCAGGAGGAGGCGCTTCAGCTCCTCACCTCCCTCCAATGCCTAGGATTCTATGTGTGTCCCCGTCTGCAGTCCCTCCCAGAAGGGTTACATCGCCTTTCTTCACTTCGTGAACTAATTATCCATAAATGTCCTGAAATCAGAGCGCTTCCCAAGGAAGGGTTCCCCGCATCACTGAGATATGTATTTGCATACGAGGGCATCAGTGTTGATCTAAAGGATCAACTCAAGAAACTAAAAGCATCAACGCCAGGTTTACGTGGTAAAGCATGTCCTCTCCTAATTCCTATCGCTGCTCAAGGAGCATTCCTCTCTTCATTGAGATATCCAAGGGCAAGACCGCAAGAGGATGCAGCATCGTCTACAGGATCAACTCAAGAAAATAGCTAG
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| Protein seq | MRQFGPDFGGVTKKSFLHLKKIELVGLPELVEWVGGDHCHMFSKLLSIRCEDCPNLTVLLLPSFECSISDTKDINTIWFPNLCSLKIRNCPRLSLPPLPHTSMLTCVTVKEDDTDLMYFDGKSLRLNRYGSALAFHNLNKVEDMEIVDMPLVSWTGLQKLNSPRSMQSMGLLSNLSSLTHLELVNCDNLRVDGFDPLTTCNLKEMAVYNSKNHHPSIAADLFSVVAMMEVIPAGSFQQLEQLSVDSISAVLVAPICNLLASTLCKMEFPYDMWMESFTETQEEALQLLTSLQCLGFYVCPRLQSLPEGLHRLSSLRELIIHKCPEIRALPKEGFPASLRYVFAYEGISVDLKDQLKKLKASTPGLRGKACPLLIPIAAQGAFLSSLRYPRARPQEDAASSTGSTQENS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0261400 | Os02t0261400-00 | Chr02 | 9142458 | 9144360 | + | irgsp1_rep | ||
| CDS seq | ATGCGTCAATTTGGACCTGATTTTGGTGGTGTTACGAAGAAGAGTTTCTTACACTTGAAGAAAATTGAACTTGTTGGTTTACCGGAACTTGTGGAGTGGGTTGGGGGAGATCATTGCCATATGTTTTCAAAGCTTTTAAGCATCAGATGTGAAGATTGTCCTAATCTCACCGTGCTCCTGCTGCCATCGTTTGAGTGCTCTATCTCTGACACAAAAGACATAAACACCATATGGTTTCCCAACTTGTGTTCTCTTAAGATTCGAAATTGCCCCAGGTTGTCACTGCCTCCCCTGCCTCACACTTCCATGCTAACCTGTGTTACTGTGAAAGAAGATGATACAGATTTGATGTATTTTGATGGAAAAAGTCTGAGGTTAAATCGCTACGGTAGTGCTTTGGCCTTCCATAACCTGAACAAAGTAGAAGATATGGAAATTGTAGACATGCCGCTCGTTTCATGGACTGGTCTCCAAAAGCTGAACTCCCCCAGAAGCATGCAATCGATGGGTCTGCTCTCAAACCTCTCATCTCTCACTCATCTAGAACTAGTAAATTGTGATAACTTAAGAGTCGATGGTTTTGATCCTCTCACCACATGCAACCTCAAGGAAATGGCAGTTTACAATAGTAAAAACCATCACCCCTCCATAGCAGCGGATTTGTTCTCAGTGGTGGCAATGATGGAAGTAATACCTGCAGGTTCCTTCCAGCAGCTGGAACAACTCTCGGTGGACAGCATCTCAGCAGTGCTTGTTGCCCCCATTTGCAACCTCCTGGCTAGCACCCTCTGTAAGATGGAATTCCCGTATGACATGTGGATGGAAAGCTTCACCGAAACGCAGGAGGAGGCGCTTCAGCTCCTCACCTCCCTCCAATGCCTAGGATTCTATGTGTGTCCCCGTCTGCAGTCCCTCCCAGAAGGGTTACATCGCCTTTCTTCACTTCGTGAACTAATTATCCATAAATGTCCTGAAATCAGAGCGCTTCCCAAGGAAGGGTTCCCCGCATCACTGAGATATGTATTTGCATACGAGGGCATCAGTGTTGATCTAAAGGATCAACTCAAGAAACTAAAAGCATCAACGCCAGGTTTACGTGGTAAAGCATGTCCTCTCCTAATTCCTATCGCTGCTCAAGGAGCATTCCTCTCTTCATTGAGATATCCAAGGGCAAGACCGCAAGAGGATGCAGCATCGTCTACAGGATCAACTCAAGAAAATAGCTAG
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| Protein seq | MRQFGPDFGGVTKKSFLHLKKIELVGLPELVEWVGGDHCHMFSKLLSIRCEDCPNLTVLLLPSFECSISDTKDINTIWFPNLCSLKIRNCPRLSLPPLPHTSMLTCVTVKEDDTDLMYFDGKSLRLNRYGSALAFHNLNKVEDMEIVDMPLVSWTGLQKLNSPRSMQSMGLLSNLSSLTHLELVNCDNLRVDGFDPLTTCNLKEMAVYNSKNHHPSIAADLFSVVAMMEVIPAGSFQQLEQLSVDSISAVLVAPICNLLASTLCKMEFPYDMWMESFTETQEEALQLLTSLQCLGFYVCPRLQSLPEGLHRLSSLRELIIHKCPEIRALPKEGFPASLRYVFAYEGISVDLKDQLKKLKASTPGLRGKACPLLIPIAAQGAFLSSLRYPRARPQEDAASSTGSTQENS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0261400 | RBH | 0.198976 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16070 | RBH | 0.137930 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011480 | RBH | 0.079589 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011320 | RBH | 0.0 | 0.0 | 0.469055 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011270 | SBH | 0.478965 | 0.000000 | 2.001482 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0016200 | SBH | 1.134152 | 3.6844715 | 3.4322085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011110 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0158100 | SBH | 0.3555095 | 6.991767 | 1.9984055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011610 | SBH | 0.0 | 0.082382 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011210 | SBH | 0.0 | 2.682012 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011590 | SBH | 0.798827 | 2.569376 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011530 | SBH | 0.000000 | 0.212229 | 0.199630 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011210 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011560 | SBH | 0.0 | 0.0 | 0.089194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011370 | SBH | 0.0 | 4.645555 | 0.0 |
