Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0257500 | OGI:02025550 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:8879339-8882660 | ||||||||
| Gene Symbol | BHLH53, OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2 | ||||||||||
| DNA seq | GTTACGCACGCGTGTACATGCACGTATAGTTATGCACGCGGCTACGTACTCCAGCTAGCTTAGCTAGCTAGCCAGTCACTGCACTGACACTGTATGTTACACGTCACAAGAAAGTTTGCTGAATTTCTTGCACCAGCTCCTCTGCACTCAGCTCGCACTCGATCCCAATCTGTATGAACAAACACAAACCAAATCAACGAATCCATTGTCAGTTCACTAGCCAGCTTAATTAACACTGCATCCAAATATATGTATATTAATATACAAGCAAATTAAATTCTACTGTGTCGATCTGTGTGCTTGATTACCATGCATACACATATCATATAGTAAAACAGAATTAACAGCTAGCTAGCTAAACAAGCATTATATCGTCGATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCAACTTGCAAGCAGGTTTAGGCCCTCTTTATTTAGGCTTTGGCTTATTGGCTTAGATTTTTAAGTCTGCTTATTTAATGTCCTAAGTTTAGTGGTGGAGTCATACATCTATCTCATATAAACCAAAAAATCTTCTCCAACCTAGCTTTTGACTTAATAGTGTAAGAGTGGCTGATGGCTTCAAAAAAGCCAAACGAAAAAGCTGCTTATTTGTTTAGGCTTAGACTTTTTGGCTTATAAGTTGGCTTATAATCCTAAACAAAGAGGACCTTAATCACTCAACGTTCTACAGCTACCAAAGCTGTAGCTTTTACTATTGTGTACACGCATATTCTTCCCAGCTCGTGCTTTGCTCGACTGCTCATGCATAGTTTCGCACCAGTAGTGACATTTATCCCCGAATATATATTTATGTGTTCATATTAATTACTTATACCCGCTCTGGCTCTGGCAGTTTCTCGAGCTCTTTCAAAGATAATGTATATATACACAGAAGTGCCATTTCCAATAAATACTCATGCATCAGGCCTGTGTTATAAATCCCTGTATGTACGTACACACTCACTGTGTATCTGAGCTCTACATTAGAAATGTCTGAACACAAACTTAGCCTATACAGCATGCAGATACGTATGCCTGCATTTATGAAACCCATCGAATAATGGAAGAAGTTTTAAACATGCAGAGACAACCGTAGAGATTTATATATATCTATGAGAGGGAATTATGGGCCAAAGAAGGAGAATCCATGCAGGACATGAACAGTTGAAGGTTGATTTGGGGCTTAATTAATGCAATCCTGCGTATACGCATGCTTAGTTTCAGTTTCAGTGTGTGGCTCTGTAGCACTGTAGTACTCTTGGTCACATGAAATGAACACATCCTACCAATTACTGTTCAAATAAATCGATCGATATCATATCACTGATCAGTGCACTTGCTTAATGTGTACATTGATTATATATTAAACTCGTGTGCGTGCATGTCTCGTGTAATATAATATCGCATGTGTTTTGAGTGTTTTTCGAGATCGATTTAGTGTAGCATGTTATGGACGATGCAGAGATTGATCTCCATGAATCTGATGAGTAATAAAATATACAGTAGATTAGTATTTTACCTTGATGGTGAAGGAGAGGACGGTGGCGTCGTCGACGGTGCAGATGCTGACGTGCAGGATCTCGAGCGAGAGGCTCTCCAGAGCGGCGATGATCTTGAGCGCCTGACCCGGCGCGCGGTGCGACACCGTCTTCAGCACCAGGTTCGGCCCGGCGAACTCCACCCTCACGTCGGGGACGCCGACGATGCCGGCGATGGCGGCGGCGGAGGAGGGGATGACCAGCGGCCTGCAGCTGGCGCCGCCGCGGGCGGCGAGCTCGGTGACGAGGCTGTCGAGGATGGGCAGGAACGCCGGCGCCGGCGAGAGCTCGTGCGTCGTCGTCGTCGTCGTCGACGAGGACGACGTGGGCGTCATGGCCGGCGACATGCTGTACGCCACCGAGCACGACGACGTCGCGGCCGCCGGGTGCGGCGGGCGAGCGGTGGCGGCGGCGGCGGCATGCTTGTTGTACGGGCTGCCCGGGGTGGGCGTCCGTGGGCTGATCGGCACCCCGGCGGCGGCGGCGGCGGCGAACCGCGGGCTGATCGGCGGCGTGGGCTTGACCATGAGCGCCGCCGCCGCCGGCGACGGCCGCGGGCTGAGCACCTGGTCGGCATAGGCCTTCCGATTCTTCTTGGCCTCCAGCGAGCGAAGCACTTGCTGAAGCTCCTTGATGTAATCCACCACCCCTCCTATGATTGACGCCTGATCTCCCTGCACCCACAATTAATAATACACACAAATCAGATTTAAATTAATTGCACTGATCTATTCAAGTGATTAATCTCCATTAATTTGTTCAACCAATGATTCACTGTACTATACATTCTCTGAGATAATTGATGCAAGCCACTGTGTCTTCATCTCTCTCTCTCTCTCGTATGGATTGGTAGCTGTGTGTACTAGATAGATTCTCTAATGATGCAAGAGTAGTTGTACTACTAATTATTGGTAGGCTGGTGGTAGCTAGCTAAGCTAGGGCAGTTCAAGCATGCAGCACCAGCAGCATCAACGGTTGATTGCTGGTCCTGTACCATGTACATGGGACACAATCATGCAACTGTTGCAGCAGCACGTACACGATCAGGGAAAAAAAAGTTACTCTAGATGCTACAGCTATAGATACATAGTATCAAAATCCCATGAGCCATTCTAGCTTCATTAGCTAGTAGTGCAACACACACAGTGACACTAAACTATGCTTAGTGCGAGCTAAGCTAAGCTAGTAATTAGAATGAATGGATTAATTACCCTCTTGACGTAGAAGCATGGCATGAGCGAGCGCAGGACGGCGAGGTGCTCGTTCATCTGCTTCCTCCGGTTGCGCTCCACCGTGATGTGCGACATCTTCGCCGCACCATCGCCGTCCCCCACCGCCGCCGCCAACGCCGCCGGAGACGACGACGACGACGACGACCCCTTTTGCTTCTTCTGTGCCGGAGGACCACCGCCACCGCCGCCGCCTTTCTCCTCGTCGCGGCCCTCCCGCCGCCGACCGTTCGCGGCGGTCGTCGTCGTCGTCGTCCTTGCACCACCGCCGGCGCCGGTGCTGGCCGCAGCGGCTCCCTGATCAGCCACACCAGCTAAAGAAACCCCACCGCCTCCGCCGCCGGCGCCGCCATTGATGCACTCCTCCCACGTCTCGAGGATGCGGAACAGGTCGGCGTCCGCGACGTGGCGGATGTCGCGGTGGTCGTCGGAGAAGAGCTCGCACAGGCCGCCGCCGCCGCCGTCCGCCAT
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| CDS seq | ATGGCGGACGGCGGCGGCGGCGGCCTGTGCGAGCTCTTCTCCGACGACCACCGCGACATCCGCCACGTCGCGGACGCCGACCTGTTCCGCATCCTCGAGACGTGGGAGGAGTGCATCAATGGCGGCGCCGGCGGCGGAGGCGGTGGGGTTTCTTTAGCTGGTGTGGCTGATCAGGGAGCCGCTGCGGCCAGCACCGGCGCCGGCGGTGGTGCAAGGACGACGACGACGACGACCGCCGCGAACGGTCGGCGGCGGGAGGGCCGCGACGAGGAGAAAGGCGGCGGCGGTGGCGGTGGTCCTCCGGCACAGAAGAAGCAAAAGGGGTCGTCGTCGTCGTCGTCGTCTCCGGCGGCGTTGGCGGCGGCGGTGGGGGACGGCGATGGTGCGGCGAAGATGTCGCACATCACGGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGCACCTCGCCGTCCTGCGCTCGCTCATGCCATGCTTCTACGTCAAGAGGGGAGATCAGGCGTCAATCATAGGAGGGGTGGTGGATTACATCAAGGAGCTTCAGCAAGTGCTTCGCTCGCTGGAGGCCAAGAAGAATCGGAAGGCCTATGCCGACCAGGTGCTCAGCCCGCGGCCGTCGCCGGCGGCGGCGGCGCTCATGGTCAAGCCCACGCCGCCGATCAGCCCGCGGTTCGCCGCCGCCGCCGCCGCCGGGGTGCCGATCAGCCCACGGACGCCCACCCCGGGCAGCCCGTACAACAAGCATGCCGCCGCCGCCGCCACCGCTCGCCCGCCGCACCCGGCGGCCGCGACGTCGTCGTGCTCGGTGGCGTACAGCATGTCGCCGGCCATGACGCCCACGTCGTCCTCGTCGACGACGACGACGACGACGCACGAGCTCTCGCCGGCGCCGGCGTTCCTGCCCATCCTCGACAGCCTCGTCACCGAGCTCGCCGCCCGCGGCGGCGCCAGCTGCAGGCCGCTGGTCATCCCCTCCTCCGCCGCCGCCATCGCCGGCATCGTCGGCGTCCCCGACGTGAGGGTGGAGTTCGCCGGGCCGAACCTGGTGCTGAAGACGGTGTCGCACCGCGCGCCGGGTCAGGCGCTCAAGATCATCGCCGCTCTGGAGAGCCTCTCGCTCGAGATCCTGCACGTCAGCATCTGCACCGTCGACGACGCCACCGTCCTCTCCTTCACCATCAAGATTGGGATCGAGTGCGAGCTGAGTGCAGAGGAGCTGGTGCAAGAAATTCAGCAAACTTTCTTGTGA
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| Protein seq | MADGGGGGLCELFSDDHRDIRHVADADLFRILETWEECINGGAGGGGGGVSLAGVADQGAAAASTGAGGGARTTTTTTAANGRRREGRDEEKGGGGGGGPPAQKKQKGSSSSSSSPAALAAAVGDGDGAAKMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAKKNRKAYADQVLSPRPSPAAAALMVKPTPPISPRFAAAAAAGVPISPRTPTPGSPYNKHAAAAATARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHELSPAPAFLPILDSLVTELAARGGASCRPLVIPSSAAAIAGIVGVPDVRVEFAGPNLVLKTVSHRAPGQALKIIAALESLSLEILHVSICTVDDATVLSFTIKIGIECELSAEELVQEIQQTFL |
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| Function | Transcription factor SPEECHLESS [UniProtKB/Swiss-Prot:Q700C7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0257500 | Os02t0257500-01 | Chr02 | 8879339 | 8882660 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGACGGCGGCGGCGGCGGCCTGTGCGAGCTCTTCTCCGACGACCACCGCGACATCCGCCACGTCGCGGACGCCGACCTGTTCCGCATCCTCGAGACGTGGGAGGAGTGCATCAATGGCGGCGCCGGCGGCGGAGGCGGTGGGGTTTCTTTAGCTGGTGTGGCTGATCAGGGAGCCGCTGCGGCCAGCACCGGCGCCGGCGGTGGTGCAAGGACGACGACGACGACGACCGCCGCGAACGGTCGGCGGCGGGAGGGCCGCGACGAGGAGAAAGGCGGCGGCGGTGGCGGTGGTCCTCCGGCACAGAAGAAGCAAAAGGGGTCGTCGTCGTCGTCGTCGTCTCCGGCGGCGTTGGCGGCGGCGGTGGGGGACGGCGATGGTGCGGCGAAGATGTCGCACATCACGGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGCACCTCGCCGTCCTGCGCTCGCTCATGCCATGCTTCTACGTCAAGAGGGGAGATCAGGCGTCAATCATAGGAGGGGTGGTGGATTACATCAAGGAGCTTCAGCAAGTGCTTCGCTCGCTGGAGGCCAAGAAGAATCGGAAGGCCTATGCCGACCAGGTGCTCAGCCCGCGGCCGTCGCCGGCGGCGGCGGCGCTCATGGTCAAGCCCACGCCGCCGATCAGCCCGCGGTTCGCCGCCGCCGCCGCCGCCGGGGTGCCGATCAGCCCACGGACGCCCACCCCGGGCAGCCCGTACAACAAGCATGCCGCCGCCGCCGCCACCGCTCGCCCGCCGCACCCGGCGGCCGCGACGTCGTCGTGCTCGGTGGCGTACAGCATGTCGCCGGCCATGACGCCCACGTCGTCCTCGTCGACGACGACGACGACGACGCACGAGCTCTCGCCGGCGCCGGCGTTCCTGCCCATCCTCGACAGCCTCGTCACCGAGCTCGCCGCCCGCGGCGGCGCCAGCTGCAGGCCGCTGGTCATCCCCTCCTCCGCCGCCGCCATCGCCGGCATCGTCGGCGTCCCCGACGTGAGGGTGGAGTTCGCCGGGCCGAACCTGGTGCTGAAGACGGTGTCGCACCGCGCGCCGGGTCAGGCGCTCAAGATCATCGCCGCTCTGGAGAGCCTCTCGCTCGAGATCCTGCACGTCAGCATCTGCACCGTCGACGACGCCACCGTCCTCTCCTTCACCATCAAGATTGGGATCGAGTGCGAGCTGAGTGCAGAGGAGCTGGTGCAAGAAATTCAGCAAACTTTCTTGTGA
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| Protein seq | MADGGGGGLCELFSDDHRDIRHVADADLFRILETWEECINGGAGGGGGGVSLAGVADQGAAAASTGAGGGARTTTTTTAANGRRREGRDEEKGGGGGGGPPAQKKQKGSSSSSSSPAALAAAVGDGDGAAKMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAKKNRKAYADQVLSPRPSPAAAALMVKPTPPISPRFAAAAAAGVPISPRTPTPGSPYNKHAAAAATARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHELSPAPAFLPILDSLVTELAARGGASCRPLVIPSSAAAIAGIVGVPDVRVEFAGPNLVLKTVSHRAPGQALKIIAALESLSLEILHVSICTVDDATVLSFTIKIGIECELSAEELVQEIQQTFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0257500 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15760 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0526100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011080 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011020 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0145900 | RBH | 0.3270335 | 0 | 1.7263265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0153500 | RBH | 0.310954 | 0 | 6.137024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011290 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011090 | RBH | 0.0 | 0.0 | 0.0 |
