Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0249200 | OGI:02024330 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:8416954-8417585 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTTTATATTGAAAATTCGTTTGTAATTACAGAATCGAAATCTTTCTAACTGTACTTAATAATTACACTAATCCTAATTAAAACACCTCAAACTTGCCAAATCTGCGGGGCGCGATCCATGGCGCCGGCCGCTAGACTTTGTCGCCGGCCGCGGCGGCGGCGGCGCCGACGTCTCGCCGGCAGAGCGGGCACGTGGCGTGCGAGTACAGCCACATGTCGACGCACTCCACGTGGAACAGGTGCTTGCACTCCGGCAGCCGCCGCACGGCCTCGCCGTCGCGCACCACGCCGAGGCAGATCGCGCACTGCGCCCACCCGCCGCCGCCGCCCGCGGCGCCCCTCCGGTACGCGAACTTGGGGATCGCGGCGAGCGCGGACGGCGCCAGCCCGCGCAGGCCGCCGACAGCGGCGGGTGCGGCGGCGGCGCCGCCGCCACGGCCGGACGGCGACGCCGACGCCGAGGCCGCGTAGCCCTGCAGGGTGACGGCGCGGCGGAAGCAGACGGCCACGGTGAAGACGATGATGGAGGAGGCGAAGGCGAGGCAGACGAGCACCACCGTGTCGCACACGCGGTAGCTCCCGCCGGCGACGGCGTCCGCCGCGGTGGCGCTGCTGGGGTCGTGGGACGACAT
More
|
||||||||||
| CDS seq | ATGTCGTCCCACGACCCCAGCAGCGCCACCGCGGCGGACGCCGTCGCCGGCGGGAGCTACCGCGTGTGCGACACGGTGGTGCTCGTCTGCCTCGCCTTCGCCTCCTCCATCATCGTCTTCACCGTGGCCGTCTGCTTCCGCCGCGCCGTCACCCTGCAGGGCTACGCGGCCTCGGCGTCGGCGTCGCCGTCCGGCCGTGGCGGCGGCGCCGCCGCCGCACCCGCCGCTGTCGGCGGCCTGCGCGGGCTGGCGCCGTCCGCGCTCGCCGCGATCCCCAAGTTCGCGTACCGGAGGGGCGCCGCGGGCGGCGGCGGCGGGTGGGCGCAGTGCGCGATCTGCCTCGGCGTGGTGCGCGACGGCGAGGCCGTGCGGCGGCTGCCGGAGTGCAAGCACCTGTTCCACGTGGAGTGCGTCGACATGTGGCTGTACTCGCACGCCACGTGCCCGCTCTGCCGGCGAGACGTCGGCGCCGCCGCCGCCGCGGCCGGCGACAAAGTCTAG
More
|
||||||||||
| Protein seq | MSSHDPSSATAADAVAGGSYRVCDTVVLVCLAFASSIIVFTVAVCFRRAVTLQGYAASASASPSGRGGGAAAAPAAVGGLRGLAPSALAAIPKFAYRRGAAGGGGGWAQCAICLGVVRDGEAVRRLPECKHLFHVECVDMWLYSHATCPLCRRDVGAAAAAAGDKV |
||||||||||
| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0249200 | Os02t0249200-00 | Chr02 | 8416954 | 8417585 | - | irgsp1_rep | ||
| CDS seq | ATGTCGTCCCACGACCCCAGCAGCGCCACCGCGGCGGACGCCGTCGCCGGCGGGAGCTACCGCGTGTGCGACACGGTGGTGCTCGTCTGCCTCGCCTTCGCCTCCTCCATCATCGTCTTCACCGTGGCCGTCTGCTTCCGCCGCGCCGTCACCCTGCAGGGCTACGCGGCCTCGGCGTCGGCGTCGCCGTCCGGCCGTGGCGGCGGCGCCGCCGCCGCACCCGCCGCTGTCGGCGGCCTGCGCGGGCTGGCGCCGTCCGCGCTCGCCGCGATCCCCAAGTTCGCGTACCGGAGGGGCGCCGCGGGCGGCGGCGGCGGGTGGGCGCAGTGCGCGATCTGCCTCGGCGTGGTGCGCGACGGCGAGGCCGTGCGGCGGCTGCCGGAGTGCAAGCACCTGTTCCACGTGGAGTGCGTCGACATGTGGCTGTACTCGCACGCCACGTGCCCGCTCTGCCGGCGAGACGTCGGCGCCGCCGCCGCCGCGGCCGGCGACAAAGTCTAG
More
|
|||||||
| Protein seq | MSSHDPSSATAADAVAGGSYRVCDTVVLVCLAFASSIIVFTVAVCFRRAVTLQGYAASASASPSGRGGGAAAAPAAVGGLRGLAPSALAAIPKFAYRRGAAGGGGGWAQCAICLGVVRDGEAVRRLPECKHLFHVECVDMWLYSHATCPLCRRDVGAAAAAAGDKV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0249200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0537300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010810 | RBH | 0.0 | 0.0 | 0.742241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010650 | RBH | 0.949167 | 1.827162 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010490 | RBH | 0.154121 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010600 | RBH | 1.971316 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0139500 | RBH | 8.3581375 | 3.999238 | 0.1894125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010360 | RBH | 0.140626 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0146400 | RBH | 4.808441 | 1.7042865 | 0.3096455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010510 | RBH | 0.333109 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010870 | RBH | 0.498577 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010530 | RBH | 0.929104 | 0.396808 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010770 | RBH | 0.524492 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010570 | RBH | 0.0 | 0.0 | 0.0 |
