Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0187000 | OGI:02014650 | 8/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:4829205-4830333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGATGTCCACCTACGTCGCCGACTCCACGGTGCGCGCCATCATCGGCAGCCGCCGGCTCAAGGACCGCGACGCGTTCCTCCGGATGCTCGACGAGCTGTTCACCATCATGCCCGGGATGAGCCTCCCGGACCTCTTCCCGTCGTCGCGCCTCGCCATGCTCGTCAGCCGCGCTCCCGGCCGGATCATGCGCTACCGCCGCCGCATGCGCCGGATCATGGACAGCATCATCCACGAGCACCAGGAGAGGAGAGCCGCCGCCGACGCCGCCGGTGACGACGACGACGACGACGACGAGGACTTGGTCGACGTCCTCCTCAGGCTGCAGAAGGAAGTGGGCGCGCAGTATCCTCTCACCACCGAGAACATCAAAACCGTCATGATGGTAAGCTCGACGCCGCCATGGCCGAACACCGAAAGCTCGACGCGCGCGCCAAAGATGTCTCCACCATTTTTCTCCCTCGCTTCTTTCACAGGACATATTTGGCGCCGCCAGCGAGACGTCGTCGACTACGCTGGAGTGGGTGATGGCGGAGCTGATGCGGAGCCCGAGCGCCATGCGTAAGGCGCAGGACGAGGTCCGGCGAGCCCTCGCCGCCGGCGCCGCCGGCCACGACACGGTGACCGAGGACATCCTACCCAACCTCAGCTACCTCAAGCTCGTCGTCAAGGAGACGCTCCGGCTGCACCCGCCGGCGCCGCTGCTGGCGCCGCGCCGGTGCGACAGCCCGCGCGAGGTGCTGGTGCTCGGCCACGACGTGCCGGCGGGCGCCACGGTGCTCGTGAACGCGTGGGCGATCGGCCGGGACACGGCGGCGTGGGGCGGCGCGGCGGAGGAGTTCTCGCCGGAGAGGTTCGAGCGGTGCGAGAGGGACTTCAGGGGGGCGGACTTCGAGCTCATCCCGTTCGGCGCCGGCCGGCGGATGTGCCCCGGCATGGCGTTCGGGCTGGTGCACGTCGAGCTCGCGCTCGCCGCGCTGCTGTTCCACTTCGACTGGAGCCTCCCCGGCGGCATGGCCGCCGACGAGCTCGACATGGCGGAGAGCTCCGGGCTCACCACGCGACGCCGGCTTCCCCTCCTCGTGGTTGCACGGCCTCATGCCGCTCTCCCCACTAAGTACTGTAATTAA
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| CDS seq | ATGATGTCCACCTACGTCGCCGACTCCACGGTGCGCGCCATCATCGGCAGCCGCCGGCTCAAGGACCGCGACGCGTTCCTCCGGATGCTCGACGAGCTGTTCACCATCATGCCCGGGATGAGCCTCCCGGACCTCTTCCCGTCGTCGCGCCTCGCCATGCTCGTCAGCCGCGCTCCCGGCCGGATCATGCGCTACCGCCGCCGCATGCGCCGGATCATGGACAGCATCATCCACGAGCACCAGGAGAGGAGAGCCGCCGCCGACGCCGCCGGTGACGACGACGACGACGACGACGAGGACTTGGTCGACGTCCTCCTCAGGCTGCAGAAGGAAGTGGGCGCGCAGTATCCTCTCACCACCGAGAACATCAAAACCGTCATGATGGACATATTTGGCGCCGCCAGCGAGACGTCGTCGACTACGCTGGAGTGGGTGATGGCGGAGCTGATGCGGAGCCCGAGCGCCATGCGTAAGGCGCAGGACGAGGTCCGGCGAGCCCTCGCCGCCGGCGCCGCCGGCCACGACACGGTGACCGAGGACATCCTACCCAACCTCAGCTACCTCAAGCTCGTCGTCAAGGAGACGCTCCGGCTGCACCCGCCGGCGCCGCTGCTGGCGCCGCGCCGGTGCGACAGCCCGCGCGAGGTGCTGGTGCTCGGCCACGACGTGCCGGCGGGCGCCACGGTGCTCGTGAACGCGTGGGCGATCGGCCGGGACACGGCGGCGTGGGGCGGCGCGGCGGAGGAGTTCTCGCCGGAGAGGTTCGAGCGGTGCGAGAGGGACTTCAGGGGGGCGGACTTCGAGCTCATCCCGTTCGGCGCCGGCCGGCGGATGTGCCCCGGCATGGCGTTCGGGCTGGTGCACGTCGAGCTCGCGCTCGCCGCGCTGCTGTTCCACTTCGACTGGAGCCTCCCCGGCGGCATGGCCGCCGACGAGCTCGACATGGCGGAGAGCTCCGGGCTCACCACGCGACGCCGGCTTCCCCTCCTCGTGGTTGCACGGCCTCATGCCGCTCTCCCCACTAAGTACTGTAATTAA
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| Protein seq | MMSTYVADSTVRAIIGSRRLKDRDAFLRMLDELFTIMPGMSLPDLFPSSRLAMLVSRAPGRIMRYRRRMRRIMDSIIHEHQERRAAADAAGDDDDDDDEDLVDVLLRLQKEVGAQYPLTTENIKTVMMDIFGAASETSSTTLEWVMAELMRSPSAMRKAQDEVRRALAAGAAGHDTVTEDILPNLSYLKLVVKETLRLHPPAPLLAPRRCDSPREVLVLGHDVPAGATVLVNAWAIGRDTAAWGGAAEEFSPERFERCERDFRGADFELIPFGAGRRMCPGMAFGLVHVELALAALLFHFDWSLPGGMAADELDMAESSGLTTRRRLPLLVVARPHAALPTKYCN |
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| Function | Premnaspirodiene oxygenase [UniProtKB/Swiss-Prot:A6YIH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0187000 | Os02t0187000-00 | Chr02 | 4829205 | 4830333 | + | irgsp1_rep | ||
| CDS seq | ATGATGTCCACCTACGTCGCCGACTCCACGGTGCGCGCCATCATCGGCAGCCGCCGGCTCAAGGACCGCGACGCGTTCCTCCGGATGCTCGACGAGCTGTTCACCATCATGCCCGGGATGAGCCTCCCGGACCTCTTCCCGTCGTCGCGCCTCGCCATGCTCGTCAGCCGCGCTCCCGGCCGGATCATGCGCTACCGCCGCCGCATGCGCCGGATCATGGACAGCATCATCCACGAGCACCAGGAGAGGAGAGCCGCCGCCGACGCCGCCGGTGACGACGACGACGACGACGACGAGGACTTGGTCGACGTCCTCCTCAGGCTGCAGAAGGAAGTGGGCGCGCAGTATCCTCTCACCACCGAGAACATCAAAACCGTCATGATGGACATATTTGGCGCCGCCAGCGAGACGTCGTCGACTACGCTGGAGTGGGTGATGGCGGAGCTGATGCGGAGCCCGAGCGCCATGCGTAAGGCGCAGGACGAGGTCCGGCGAGCCCTCGCCGCCGGCGCCGCCGGCCACGACACGGTGACCGAGGACATCCTACCCAACCTCAGCTACCTCAAGCTCGTCGTCAAGGAGACGCTCCGGCTGCACCCGCCGGCGCCGCTGCTGGCGCCGCGCCGGTGCGACAGCCCGCGCGAGGTGCTGGTGCTCGGCCACGACGTGCCGGCGGGCGCCACGGTGCTCGTGAACGCGTGGGCGATCGGCCGGGACACGGCGGCGTGGGGCGGCGCGGCGGAGGAGTTCTCGCCGGAGAGGTTCGAGCGGTGCGAGAGGGACTTCAGGGGGGCGGACTTCGAGCTCATCCCGTTCGGCGCCGGCCGGCGGATGTGCCCCGGCATGGCGTTCGGGCTGGTGCACGTCGAGCTCGCGCTCGCCGCGCTGCTGTTCCACTTCGACTGGAGCCTCCCCGGCGGCATGGCCGCCGACGAGCTCGACATGGCGGAGAGCTCCGGGCTCACCACGCGACGCCGGCTTCCCCTCCTCGTGGTTGCACGGCCTCATGCCGCTCTCCCCACTAAGTACTGTAATTAA
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| Protein seq | MMSTYVADSTVRAIIGSRRLKDRDAFLRMLDELFTIMPGMSLPDLFPSSRLAMLVSRAPGRIMRYRRRMRRIMDSIIHEHQERRAAADAAGDDDDDDDEDLVDVLLRLQKEVGAQYPLTTENIKTVMMDIFGAASETSSTTLEWVMAELMRSPSAMRKAQDEVRRALAAGAAGHDTVTEDILPNLSYLKLVVKETLRLHPPAPLLAPRRCDSPREVLVLGHDVPAGATVLVNAWAIGRDTAAWGGAAEEFSPERFERCERDFRGADFELIPFGAGRRMCPGMAFGLVHVELALAALLFHFDWSLPGGMAADELDMAESSGLTTRRRLPLLVVARPHAALPTKYCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0187000 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09410 | RBH | 0.0 | 0.103332 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006550 | SBH | 0.148733 | 1.999703 | 2.199345 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006700 | SBH | 0.071313 | 0.351814 | 2.067432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006470 | SBH | 0.565319 | 0.858380 | 2.226279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006430 | SBH | 0.222647 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006480 | SBH | 2.122820 | 1.144930 | 6.702986 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0082200 | RBH | 0.061093 | 0.4200125 | 0.03748 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006430 | RBH | 0.000000 | 0.0 | 0.162055 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0084600 | RBH | 0.0612765 | 0.454484 | 0.1593485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006860 | RBH | 0.018144 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006430 | RBH | 0.0 | 4.364180 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006720 | RBH | 0.914242 | 3.841780 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006720 | RBH | 0.040369 | 0.121185 | 0.236197 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006470 | SBH | 0.025650 | 0.451879 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006590 | SBH | 0.102526 | 0.194794 | 0.818000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006570 | SBH | 0.158619 | 7.248037 | 3.247797 |
