Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0178500 | OGI:02013210 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:4334610-4338102 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGTCAATACTACAATATATGGAGTACATAGAAACCTGGGCACAACTCATGACGATGATGATTATCATCGTACTTGAAAAACAAAAGCACAACCCATAGACGATGATGCTGAATTGATGATGATCATCATCGTACTTATATAATGTAAAAAAACAAAGGTAAAAAAGAAAAGAAAAGAAGAGAGGTTAAAGGCAAACCAAAGGGCACACGGTTCATCTGTAGTGAGTGTTACAAGACAACATATGGGACGGACGACAAACCGCCAAATGTCGTAGCAGAAAGGCGAGATGCTAGTGCTTGCTGGAGATGCTGAAGGAGGTGACCTTCATGGGGGTGGCCACCACCAGCGGCGCCTCCGGGGTGTCGCTGACGGCGTACTTCTCGTGCATGAAGCGGCTGGCGACGATGGACTCGTCCTTGGGGATCACCTTGTAGCAGTAGCAGCTCTTGAGCCCCTCCTGGCACTGGTAGCACTCGTGGTGGCTGTTCTTCACCTGGAGGAAGTTCCACACCACGCTGTACTTCCCCACCGTCGCCACCAGATGCCTCTCCTGCTTCCCGTTCTCGGTCACCTACACCGCCCACACAGCACATTCACAAACATGAATTTTTGGGTTTGCAGGATGCAACAAAACCAACGATGTAAACGCATCAGCATTTGTATTCTAGTTTCATAATGACTAATAATACTTCCAAATTCCCAAGAGAGCTGGTTTTCAACGTATCATGGTTGATCAAACATACAACACTCCGGCATTTCTTAGCTACGCATACACCACAAAATATGGGGAAAACATGCAAGTGGAAACCATTACTAAGGTGGAAACTTGGAAATTATGCACAAAACTTATCAGAGAAGTCTAAGACAAAACTCACATATAGGTAATGTTATACTATTTAGGTAACCATATAAAAGTTCAAGATCAAGCTCGTGTACATTCACAAGGTATGAGACTAACAAACAGCGAAGAGAAAGAAACTATTCCTGATTGTCTTTTTGTCCATTATTTATCAATTATCTATCAAACGTAGTCAAATTTCACCCTCAGATTTTGTATGGTGTCAAATATTATCTTAGCTACATATTCGATTGTTTTGTGATGTTTTGAGAACATTCGTGCTTTGTTCTACATAGTTTCCACCATATATTTACTCTACAGCACAAAATGTGTGCTACTGCTGAGCATCAAAATAAGATGTGAAACCCCAGTGTAAAGCTTTAGGCTTTTAGCAACTACCCCTCGTTGTCAAACTTATGCAAGTAAAAGGTTGACACGAACAGCTTAAAGTGAGTCACTAGTTTTTAACAGCATGCGTACATTGCGAAAACAAAACATTTTAGCACTTTTTCATGGTATACTTCAAGAAGCTAAAATATAAGTTGGGATTTGGTCATAAGAGAAATAATAACATATGTGTTGCCAATCAAATCCAATTCATCGATCACTATTTTGGTCAAATTGCCAATGTCATACACAATACCCGAATCACAGTAGGCATGATCAATTTTAATGAGCGAAAGCTACAAACCTACAATACGGTTTTGCACAAGCAAATGGCTGAACAACTTCAAATGATTACTATGTACACATTATGTGGGATTGTGGATATACACCTTCATAAATTCATGGTTTCAGAATGCGCGAGATAACAAAAGACAGTTTTAACCATGTGAATTGATCTTGGTTAATGCACAAAAAAGTAAATTGAAATGAAGTGGAAGGCTATACTCACCCATGAGAACCTCCCTTCACGGAATATATTATTCTGTCCAGCAAGATGTGAATCAAGCGGGGTCAGCTTGAGCAACCTTGGGGCAGCAATTCTGTTGCCCATCCTCCCTCCAAACCCTGTCTTTTCCTTCCCATCCTTGTCAATGAAGATGGTGCATATAAGAATCAAGTACGTGTCAGTAGTTCCGAGGATCCACTTTCCATCGTAGGTGACGTCGACATGAGTAATTGGTGAACCCAGCCCTGGGAAGGCTGTCTTTGCCATTCTCATAGAACTCTTCGAGTACAGACGGACTTTCCCATCAAGTGAACCAACAACAATTGACCCATCTCCTGTTGACGCGAAACACTGGAAGTTGGTGCCCCTAGAGAACTGATGCCCCTGTGTCCATTGCAGGACCGGCGACTCTGTAGCACTGGCTATGTTCTGCACAATCCCCCGACGGTCCCTCATGTCCCAACGGCATAACCTGTTGTCATCAAGCCCCAAGAAGGTAGACTCTGATGGGTCCATTTGCGCACCCTTGGAATCATTTGTGATATCCCTCATGTTAATATCTGCTCCGTCCTTCCCAAATTTCCATTCTGAGACGACCTTTCCGGTCTCAATGTCCAGCTGATGGACACCCTTGGCATGAGGCTTCCCATCAGTTGCCGGGCTCATCAGGAGCATGTTTGTCTCCGCACGCATAAGAAGCGCCTTCTTGGGTGTCGAGAAGTTTGTGCTCCCTCCGGAGAACTTGACCGACACGCCCTTTCCGTGTATCCCATGCTCGAAATTCCTCACCACCTGGATTCCCGAATCACCAACCAAGAAACTGTTGTCCAATGCACCAAGCGCAAGGCTCTGTATCCCTCCACCTTCCTCCACTGGCTCCTCATACTCCCTCAAGTCCTCCATGAGCGGCTTCAGAATGGGGCTACGCGACGGCATCGGGCTGCGACTCGGGCTCGGCACAAACCCGTCTGTCGCGTCCTCCCAGATGGACTCGTCCCCGTCCTCCGGGCGCGCCCACGCCGCAAAATCCTTCCCGAACACCTTGGCGCGGCCCTCATCGGTGGCGGCGACGCCGTAGCTGTTCTCGAACAGGCAGCTCTGGTACTTGGCGTAGAAATTCGGGTAGCCATCGGCGTGGAGAAACTTGAGCGCCCAGACGCCGTCGGCGACGAAGTCGACCCGGCGCTGCGCGGGGAACGTCTTGAGCTGCAGCTCGGGCCCGACCCTGGCCCGGATCTTGGACCCCACGACGAGGCACCATGGGCCGGAGGAGGGGGCGTCGTCGTCGTCGTCGTCCCCGGCGCGGACGAAGGAGGCGGCGGCGAGGCGGTCGGAGATGATCCAGCGCGCGGAGGGGGAGGAGCCGCCGATGTGGAGGTAGAGCTTGACGGCGTTGAGGGCGGCGGGGGCGGCGGCGGAGGTGGGGGAGGGGCTAGGGTTGGGGGAGATGGGCTCGGCGTACTTGAGGTGGAGGCTGCGGAGGTGGCGGTCGATCGCGTCGATGGAGGCCGGGGTGGCCGCCGCGGCCGAGGACTTGGCGGCGCTGGGCTTGGCGGAGGAGGAGGGGGGTGGGGTGGCGAAGTCGGAGGAGGCGTCGGAGGCGTGGGAGGCGGAGTCGTCGTCCTCGGAGTCGGAGAGGTCGAGGTCCTCCCGGCTGTGCGAGCCTCCCATGGCGGCGGCGGCGGCGATTAGGGTTTCGGCGAGGAGGGGGAGGGGGAGGGGGAAGGGGAGGGAATTTGAAATTTGGGAGCGGAAGGAAATGG
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| CDS seq | ATGGGAGGCTCGCACAGCCGGGAGGACCTCGACCTCTCCGACTCCGAGGACGACGACTCCGCCTCCCACGCCTCCGACGCCTCCTCCGACTTCGCCACCCCACCCCCCTCCTCCTCCGCCAAGCCCAGCGCCGCCAAGTCCTCGGCCGCGGCGGCCACCCCGGCCTCCATCGACGCGATCGACCGCCACCTCCGCAGCCTCCACCTCAAGTACGCCGAGCCCATCTCCCCCAACCCTAGCCCCTCCCCCACCTCCGCCGCCGCCCCCGCCGCCCTCAACGCCGTCAAGCTCTACCTCCACATCGGCGGCTCCTCCCCCTCCGCGCGCTGGATCATCTCCGACCGCCTCGCCGCCGCCTCCTTCGTCCGCGCCGGGGACGACGACGACGACGACGCCCCCTCCTCCGGCCCATGGTGCCTCGTCGTGGGGTCCAAGATCCGGGCCAGGGTCGGGCCCGAGCTGCAGCTCAAGACGTTCCCCGCGCAGCGCCGGGTCGACTTCGTCGCCGACGGCGTCTGGGCGCTCAAGTTTCTCCACGCCGATGGCTACCCGAATTTCTACGCCAAGTACCAGAGCTGCCTGTTCGAGAACAGCTACGGCGTCGCCGCCACCGATGAGGGCCGCGCCAAGGTGTTCGGGAAGGATTTTGCGGCGTGGGCGCGCCCGGAGGACGGGGACGAGTCCATCTGGGAGGACGCGACAGACGGGTTTGTGCCGAGCCCGAGTCGCAGCCCGATGCCGTCGCGTAGCCCCATTCTGAAGCCGCTCATGGAGGACTTGAGGGAGTATGAGGAGCCAGTGGAGGAAGGTGGAGGGATACAGAGCCTTGCGCTTGGTGCATTGGACAACAGTTTCTTGGTTGGTGATTCGGGAATCCAGGTGGTGAGGAATTTCGAGCATGGGATACACGGAAAGGGCGTGTCGGTCAAGTTCTCCGGAGGGAGCACAAACTTCTCGACACCCAAGAAGGCGCTTCTTATGCGTGCGGAGACAAACATGCTCCTGATGAGCCCGGCAACTGATGGGAAGCCTCATGCCAAGGGTGTCCATCAGCTGGACATTGAGACCGGAAAGGTCGTCTCAGAATGGAAATTTGGGAAGGACGGAGCAGATATTAACATGAGGGATATCACAAATGATTCCAAGGGTGCGCAAATGGACCCATCAGAGTCTACCTTCTTGGGGCTTGATGACAACAGGTTATGCCGTTGGGACATGAGGGACCGTCGGGGGATTGTGCAGAACATAGCCAGTGCTACAGAGTCGCCGGTCCTGCAATGGACACAGGGGCATCAGTTCTCTAGGGGCACCAACTTCCAGTGTTTCGCGTCAACAGGAGATGGGTCAATTGTTGTTGGTTCACTTGATGGGAAAGTCCGTCTGTACTCGAAGAGTTCTATGAGAATGGCAAAGACAGCCTTCCCAGGGCTGGGTTCACCAATTACTCATGTCGACGTCACCTACGATGGAAAGTGGATCCTCGGAACTACTGACACGTACTTGATTCTTATATGCACCATCTTCATTGACAAGGATGGGAAGGAAAAGACAGGGTTTGGAGGGAGGATGGGCAACAGAATTGCTGCCCCAAGGTTGCTCAAGCTGACCCCGCTTGATTCACATCTTGCTGGACAGAATAATATATTCCGTGAAGGGAGGTTCTCATGGGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGTGCTACCAGTGCCAGGAGGGGCTCAAGAGCTGCTACTGCTACAAGGTGATCCCCAAGGACGAGTCCATCGTCGCCAGCCGCTTCATGCACGAGAAGTACGCCGTCAGCGACACCCCGGAGGCGCCGCTGGTGGTGGCCACCCCCATGAAGGTCACCTCCTTCAGCATCTCCAGCAAGCACTAG
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| Protein seq | MGGSHSREDLDLSDSEDDDSASHASDASSDFATPPPSSSAKPSAAKSSAAAATPASIDAIDRHLRSLHLKYAEPISPNPSPSPTSAAAPAALNAVKLYLHIGGSSPSARWIISDRLAAASFVRAGDDDDDDAPSSGPWCLVVGSKIRARVGPELQLKTFPAQRRVDFVADGVWALKFLHADGYPNFYAKYQSCLFENSYGVAATDEGRAKVFGKDFAAWARPEDGDESIWEDATDGFVPSPSRSPMPSRSPILKPLMEDLREYEEPVEEGGGIQSLALGALDNSFLVGDSGIQVVRNFEHGIHGKGVSVKFSGGSTNFSTPKKALLMRAETNMLLMSPATDGKPHAKGVHQLDIETGKVVSEWKFGKDGADINMRDITNDSKGAQMDPSESTFLGLDDNRLCRWDMRDRRGIVQNIASATESPVLQWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKVRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFGGRMGNRIAAPRLLKLTPLDSHLAGQNNIFREGRFSWVTENGKQERHLVATVGKYSVVWNFLQVKNSHHECYQCQEGLKSCYCYKVIPKDESIVASRFMHEKYAVSDTPEAPLVVATPMKVTSFSISSKH |
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| Function | Protein CYPRO4 [UniProtKB/Swiss-Prot:P40781] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0178500 | Os02t0178500-01 | Chr02 | 4334610 | 4338102 | - | irgsp1_rep | ||
| CDS seq | ATGGGAGGCTCGCACAGCCGGGAGGACCTCGACCTCTCCGACTCCGAGGACGACGACTCCGCCTCCCACGCCTCCGACGCCTCCTCCGACTTCGCCACCCCACCCCCCTCCTCCTCCGCCAAGCCCAGCGCCGCCAAGTCCTCGGCCGCGGCGGCCACCCCGGCCTCCATCGACGCGATCGACCGCCACCTCCGCAGCCTCCACCTCAAGTACGCCGAGCCCATCTCCCCCAACCCTAGCCCCTCCCCCACCTCCGCCGCCGCCCCCGCCGCCCTCAACGCCGTCAAGCTCTACCTCCACATCGGCGGCTCCTCCCCCTCCGCGCGCTGGATCATCTCCGACCGCCTCGCCGCCGCCTCCTTCGTCCGCGCCGGGGACGACGACGACGACGACGCCCCCTCCTCCGGCCCATGGTGCCTCGTCGTGGGGTCCAAGATCCGGGCCAGGGTCGGGCCCGAGCTGCAGCTCAAGACGTTCCCCGCGCAGCGCCGGGTCGACTTCGTCGCCGACGGCGTCTGGGCGCTCAAGTTTCTCCACGCCGATGGCTACCCGAATTTCTACGCCAAGTACCAGAGCTGCCTGTTCGAGAACAGCTACGGCGTCGCCGCCACCGATGAGGGCCGCGCCAAGGTGTTCGGGAAGGATTTTGCGGCGTGGGCGCGCCCGGAGGACGGGGACGAGTCCATCTGGGAGGACGCGACAGACGGGTTTGTGCCGAGCCCGAGTCGCAGCCCGATGCCGTCGCGTAGCCCCATTCTGAAGCCGCTCATGGAGGACTTGAGGGAGTATGAGGAGCCAGTGGAGGAAGGTGGAGGGATACAGAGCCTTGCGCTTGGTGCATTGGACAACAGTTTCTTGGTTGGTGATTCGGGAATCCAGGTGGTGAGGAATTTCGAGCATGGGATACACGGAAAGGGCGTGTCGGTCAAGTTCTCCGGAGGGAGCACAAACTTCTCGACACCCAAGAAGGCGCTTCTTATGCGTGCGGAGACAAACATGCTCCTGATGAGCCCGGCAACTGATGGGAAGCCTCATGCCAAGGGTGTCCATCAGCTGGACATTGAGACCGGAAAGGTCGTCTCAGAATGGAAATTTGGGAAGGACGGAGCAGATATTAACATGAGGGATATCACAAATGATTCCAAGGGTGCGCAAATGGACCCATCAGAGTCTACCTTCTTGGGGCTTGATGACAACAGGTTATGCCGTTGGGACATGAGGGACCGTCGGGGGATTGTGCAGAACATAGCCAGTGCTACAGAGTCGCCGGTCCTGCAATGGACACAGGGGCATCAGTTCTCTAGGGGCACCAACTTCCAGTGTTTCGCGTCAACAGGAGATGGGTCAATTGTTGTTGGTTCACTTGATGGGAAAGTCCGTCTGTACTCGAAGAGTTCTATGAGAATGGCAAAGACAGCCTTCCCAGGGCTGGGTTCACCAATTACTCATGTCGACGTCACCTACGATGGAAAGTGGATCCTCGGAACTACTGACACGTACTTGATTCTTATATGCACCATCTTCATTGACAAGGATGGGAAGGAAAAGACAGGGTTTGGAGGGAGGATGGGCAACAGAATTGCTGCCCCAAGGTTGCTCAAGCTGACCCCGCTTGATTCACATCTTGCTGGACAGAATAATATATTCCGTGAAGGGAGGTTCTCATGGGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGTGCTACCAGTGCCAGGAGGGGCTCAAGAGCTGCTACTGCTACAAGGTGATCCCCAAGGACGAGTCCATCGTCGCCAGCCGCTTCATGCACGAGAAGTACGCCGTCAGCGACACCCCGGAGGCGCCGCTGGTGGTGGCCACCCCCATGAAGGTCACCTCCTTCAGCATCTCCAGCAAGCACTAG
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| Protein seq | MGGSHSREDLDLSDSEDDDSASHASDASSDFATPPPSSSAKPSAAKSSAAAATPASIDAIDRHLRSLHLKYAEPISPNPSPSPTSAAAPAALNAVKLYLHIGGSSPSARWIISDRLAAASFVRAGDDDDDDAPSSGPWCLVVGSKIRARVGPELQLKTFPAQRRVDFVADGVWALKFLHADGYPNFYAKYQSCLFENSYGVAATDEGRAKVFGKDFAAWARPEDGDESIWEDATDGFVPSPSRSPMPSRSPILKPLMEDLREYEEPVEEGGGIQSLALGALDNSFLVGDSGIQVVRNFEHGIHGKGVSVKFSGGSTNFSTPKKALLMRAETNMLLMSPATDGKPHAKGVHQLDIETGKVVSEWKFGKDGADINMRDITNDSKGAQMDPSESTFLGLDDNRLCRWDMRDRRGIVQNIASATESPVLQWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKVRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFGGRMGNRIAAPRLLKLTPLDSHLAGQNNIFREGRFSWVTENGKQERHLVATVGKYSVVWNFLQVKNSHHECYQCQEGLKSCYCYKVIPKDESIVASRFMHEKYAVSDTPEAPLVVATPMKVTSFSISSKH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0178500 | RBH | 0.232365 | 0.321522 | 1.748712 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08190 | RBH | 0.155536 | 0.214047 | 0.450749 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006060 | RBH | 0.0 | 14.958553 | 2.150026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006170 | RBH | 0.0 | 2.225371 | 1.515770 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005980 | RBH | 0.0 | 7.222246 | 2.249236 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005910 | RBH | 0.0 | 0.639190 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005940 | RBH | 1.388378 | 12.541108 | 5.094934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0074200 | RBH | 2.8862055 | 2.972242 | 4.7957365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005920 | RBH | 0.041696 | 1.128449 | 0.163455 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0076000 | RBH | 2.65614 | 1.020664 | 12.3327725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006330 | RBH | 0.036624 | 0.137673 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005900 | RBH | 0.161274 | 15.084764 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006200 | RBH | 0.0 | 15.257751 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006150 | RBH | 0.081488 | 1.141207 | 0.704159 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005920 | RBH | 0.0 | 9.221725 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006070 | RBH | 0.068465 | 7.464413 | 1.006170 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006040 | SBH | 0.190725 | 3.446550 | 2.055595 |
