Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0172000 | OGI:02012160 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:3929618-3933222 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCTGCACTGTATAAATTAACCATCTCCACTCTTCTCTACTCCATCAACCAGCAAAAGTCAGTTCAATTCAGTTCATCTTATCTGCCATGAAGGCCAAGGTTGCAGCAACAGCCCTGTTCCTGCTCCTTCTGACCTTTGGTGAGTCTGATCAACTACTTCCTCCGTTTCATATTATAAGTTATTTGACTTTTTTCTTAGTTAAACTTTTTTAAAATTTAATTAAGTTTGTAGAAAAATATAATAACATTTTCAATACAAAACAAACAATTATCAAAATTTAAATGTTAGTTTTAATGAAAGTAATTTGATATTATAGATGTTACTAGTTTTTCCTATAATTTGATCAAACCTAAAGAACTTTAACTAAGAAAAAAGTTAAATGATTTATAATATGAGATGGAGTATTAAACAAAGACATTTACTAACCTAATCATGTTTCATTTGTTGAGTACTTGTCTTCTGAATTTTGATTAATTTATATATTATCAGGTGGTGAGGCCAAGATATGCCATGATCCCAGCCAAACCTTCAAGGGGATGTGCCTCAGTAACAGCAACTGCATCTCCAGCTGCATCTCCGAGGACTAGACCGGCGGCTACTGCGGCGGCGTCATAGACCGCAAGTGCATGTGCACCAAGGAGTGCGACGACGCGCCGCCGCCGCTGCCGTCGCTGCCGGCGCCGAAGAGCGGGCGGCGGCGTCCGCCGCCACGGGCGCCGGGGGTGACGACGACGATCGAATGAGGACTGAAGAGAGGCTGTGTTGTGTGTGGTGTGTGGTGGCTATTCTGATTCATGTTCAATTTAATTTTCGATCGGTCGAAGATAATTAAGATAATGGAATTCAAATAATGGTTAATAAGATTGAGTGATTGAATACCTGGTGCAATCCACTGTCATGTTTCTACTTGCAAGTAGCTATGTGTCCACGTGTAACACACATTTGGCTGTGTACATCCGATTGGATGTAGAGGCTGGGTTTATCCCATTTTCTAAAAAATGTGTAACACGCATGGTGTGATGGTGCTAAGATGAATTAAACTGGATGTTTTCACTGATGATAATCCAATGCAAAAACTAAAGGAAAAATTTCAAATACGATACCCAAAGTTTGTGGTTTTTACCGTGGAAAAAAAACACAACTATTGGACACCCTGAAAAACTAGCAATTAGCTGTGAGTCACCCTGACTATAGGGCGACGATGACTAGCTACAAGCAAAGAATTAAACTGAAAAAATTCAAAAAAGAGAGAAAATAATTAAACTGAATTTTTCATGCAATGAGAAAATTTATATGCATGAGACGTGCCTGTTGATGTATATGAATTGAAACACAGAAAAATTCAAGATATATACGAACAATCCATATTTCTCCTTTTACTTTCCATGACAAAATGACAGTGATATATAAATATCCTATTCTCATGTTAAATCAACAAAATAAAATATACCTTTATGTTCGTGTGAGGTTTTCAATCAATTTTAGACAAAACCTGCAAGCTTTAAAGTTCCTTTAATTTAAACCTACAAGTCACAAAGTATACCATCACAACTTGTGGACTGAGCTATTTCTTGCGGTGGTTCAAATTCTTAGCTTGCAACGATGCTCGTATTTTGGAGGATTTAATCTCAGGAATTACTACATACACACAGAAAGGTGTGTTCAACAATAATCTTATGTAGACGTGTGGACTATACATGAAACGGATCGAAGTACCGTGACAAGTTGCTAATTATGATGCTCAATTGTTAAAGATTTCTTGGACATAGGAAAACCTTAACCAAGAAACTAGCACGTTTATTTTAAAACATTCCTACAAAAATCACATCCAAATTCGTAGAGCATCAAGGCAAGTTAAAGCATATTATTTTTGGGCAATTTTGTTGTTACCCCTAATTTGATTTCCAATATTGATTTTATCCCTATTTTTTAGGTTTTCAATTTTGCTCCTGTTTTTTTTAAAACGAAGCTAAGTTTTACCCTTACTTTGGATGGACATGTTAACGGTGTTAAAACTTTAACGAAAAGAAATCCATACTTTTACTTGCTTGCACATTTGACACTATTTTTATTCATCAATTGTGCCCCCATTTGTACATGCGGCTCGCAGTTTTGATAAGCTTTTACAACTATTTTTTTGTTGGAGTAAATTACACTAGCGGTCCTTAAACTTGTAACGAAGTTTCACTTAGGTCTACGAACTTGCAAAACACGCATCAAAATCCTTAAACTTGGTTTAGTGTATCATTCCGGTCCAAAGCCTAGTTTGATCGTGGTCTTGCCTATGTGGCATGCTACGTGGACGATGACATGGCTAAATTTTCTTTTCCCCTTTTTTTCTCCCCATCTTTTCTCTTCTTCCTCACCTCGGGTGAAGAAAAATGCGGCAGAAGGGAGAGGAAGGAGGCAAAGTGGAGAAAAAAAAGGATAAGAAGGGAGAAAAGAAAGAAGAAGGGAGAAAAAAATAAAAAAAATCCATGTCATCGTCCACGTAGCATGCCAGTAGACAAGACCGCGATCAAATGAGGATTTGGACCAAGATGATACATTAAACCAAGTTTAGGGATCTCAATGCGCGTTTTGCAAGTTCGTGGACCTAAGTGAAACTTCGTTACAAGTTTAAGTACTGCTAGTGTAATTTACTCTTTTTGTTGGCTTTTTCCAGACTATAGGAAAAAATAACAAACAACGAAGGGTAAAAAATCTCCGAAAACATGATATGCCATATCAAATAAAATATATCCACATTTATGTTTTCAGGGCTGCATGAGTTGTGTGAATTAAATTTTGCCATTTCTGCAAGTATCCAAAATTAAAGTATGCATATCCATTTTGGATGCAGGGTGGCCATTAATAACTAATGCAACATCACTTGGGTGCACTCACATTTATCAAACATGCTATACCTCTACAGTACAAATAGCCATCCATCCTTCTCCTCATCCAACACATCCAATTCAGCTCATGGAGGCAAAGGTTGCAACCACTGTGTTAGTCTTGCTCCTCCTCACCCTTGGTGAGTTCACTATCTACTACTCTCTCCATCAAAAAAAAAAAATACTCGACCTAGACGGGAATGTGACCTTTCCTGTACAACGAATATGGACACATCTATCCAGATTCGTTGAGTTAGGAAATATCACATCCCCATCTAGATTAAGTTTTGTTGGGACGGCGGAAGTATACAACACCTTTATCATTGCCGATACATAACCAACATGGCTGCCAACTACAGATTAAAATTGGTGTGACTAAACAGACAATGATACTGCTAATAATTAAGTATAGCTATAAAATTCTCATAATCATCGGCAACCTCATATGTTGTATAATGCTACTTCCACCGATTAAGCATCATCATCAATTGATTTATATTTGTTATTTGTGATGAGTATAGGTGGTGAGGTGGCTGCTGCCAAGATGTGCCATGATCGTAGCCAAACCTTCAAAGGGATGTGCTTCCGGACCTCCAACTGCAACACCAGCTGCACCAACGAGGGCTACACCGGCGGCCACTGCACAACCTTCAGACGTCGATGCGTGTGCACCAAGGAGTGTGGAGGGGACAGCCCGCCGGGTGATCCGCCGCCGGCGAGGGCCTGA
More
|
||||||||||
| CDS seq | CCTTTGGTGGCTGCTGCCAAGATGTGCCATGATCGTAGCCAAACCTTCAAAGGGATGTGCTTCCGGACCTCCAACTGCAACACCAGCTGCACCAACGAGGGCTACACCGGCGGCCACTGCACAACCTTCAGACGTCGATGCGTGTGCACCAAGGAGTGTGGAGGGGACAGCCCGCCGGGTGATCCGCCGCCGGCGAGGGCCTGA |
||||||||||
| Protein seq | PLVAAAKMCHDRSQTFKGMCFRTSNCNTSCTNEGYTGGHCTTFRRRCVCTKECGGDSPPGDPPPARA |
||||||||||
| Function | Defensin J1-2 [UniProtKB/Swiss-Prot:O65740] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0172000 | Os02t0172000-00 | Chr02 | 3929618 | 3933222 | + | irgsp1_rep | ||
| CDS seq | CCTTTGGTGGCTGCTGCCAAGATGTGCCATGATCGTAGCCAAACCTTCAAAGGGATGTGCTTCCGGACCTCCAACTGCAACACCAGCTGCACCAACGAGGGCTACACCGGCGGCCACTGCACAACCTTCAGACGTCGATGCGTGTGCACCAAGGAGTGTGGAGGGGACAGCCCGCCGGGTGATCCGCCGCCGGCGAGGGCCTGA
More
|
|||||||
| Protein seq | PLVAAAKMCHDRSQTFKGMCFRTSNCNTSCTNEGYTGGHCTTFRRRCVCTKECGGDSPPGDPPPARA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0172300 | SBH | 0.0 | 0.0 | 12.292075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07600 | RBH | 0.0 | 0.0 | 1.458864 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005660 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0067500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0069700 | RBH | 0 | 0 | 0.034921 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005380 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005630 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005520 | RBH | 0.0 | 0.0 | 4.005103 |
