Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0116000 | OGI:02003640 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:853795-859876 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAACTTGTAATCACATCATTTTTTGCATTCAACAAGTCAAATAATTTTGAGGTTCCAAGAACAGTGGTCAAAACAGTAAAGAATCAAAATACTTACAACTCACAACTCAAACTGCGCCATTATGCTACAAATATATACTACTAGTAGGCTTCCTCTAAAACTGCTGCACTTTCTAAATTCAGACCAACTACTTACAACAAAAACACCACGGCCATCTAACTACCAACGTGAGTGGGCTAGCACACCCCTTTACGACAAAGCATTGAGCCATTGACACCATGACCATCACAATCAGATGCAAAGATGATACGGCTAATGAGTTTGGCTCGAATCATCATCCCCACCAGAAAGCAACCAGCGCAGGTACTCAGTTCCATTGTCCAACGACGAAGCGTCGCCGTGCATGGTCACCCTCTTGCGCGTAAGAGTTTCGACAGTCACAGCTTTCCTCTTCCGTCCACCTCTCGGACACGAGAGTAACTGCTCGTCCATCTCCGTGAAGTTTGCCTGGATGTGGTTAAAGCTTGTCAGTTTGTCACTCAAATGATTTGGGCAAGCACAAGACGCGCGCAGAAGAGCTAAAGATCGGTTAGCAAAACTCACCTGAGTGTATACATGAGCGCTGGATTTCTCATGGTTGTCCCTGACATGCTTGTATGGAAACACCTTTTCACACCCCGTGAATCGACATGCGAAAGGTTTTACTTGATCATGGGACGCCTTTATATGTTTGGTTAAATTTGATTTCTGCAATAGGAGGGACAGGTAACAAGTTTCAATCCACACCAGATACGACTAAAGCTACAGTTCAAGAGGAAGACAACAAACAATGCATCAGAACATTTGGGGATAATAGACTTACATTGGAAAAAGAGCATTCACAGCCCTCAAAACTGCATTTTATCCTTTCAGTAGATGGCACCTCCTCATGGGCTCGTAGGTGCCTTTTAATGTTCTTCTTCAGGTGTTTTTCCCCACAGATATCACACTGAACATATTGATGGCAAGCCTGATTATGAGCCCTCAAACATTCAACATTTGTGAATGTCTTCATGCAGCCTGGTTCACAGCAGACTACTTCCACGTAGTCCAATTTCACTGCCAGAACAGCACAAATTAATTTAATTCTGGGGATACCATTAGCATGATTAATTATATAATGCATGGATTGAGCTGCAGTTTTTTAGTTCTGAAATTTACAAGGCAGCGCCTGATCTACTATAAGTAACTGAGGAGATACCATGTGATTCTTCATGTTTCTTCATCTTTGAAGCATACTTGAAAACCTTGTTACAGCCCTCCTCCTTGCAAACAAACTGCCGGTTGCTTTTAGTAGCAGTTTCATCCTCATGGATTTCCTTTACATGCCTTTGCATATTTGCCTTTATACTGAACTTCCTACCACAACCATCCATAGAGCAGGTAAACAACTTCCCTTGATGCTTAAGCATATGACGGTTCAAGTGATCTTTCCTAATGTAGCTGAAAGGGCAGTCTTCAAGTGGGCAAATGAACGATCTCTACAGTCAAGAAGGGAACGAGTCAAAACTGAAGCTGCTGTAAGCTTACACATTTCTTTCATACTTATAAATTATCTAAAATAAATTATCTAGTAAACTGGTTAACGGAATATGCAACGAATACCTAAATGTTCAGTGTTTTCCATTAAGATGATAGAGATAAAAGGGAGTATAATCACCATAGCGAGCTGAGAACCAATGATGAATAGTCCTAGCTTTCTGAGGTGACATTTTGATGTTGGATCCTCTCACCTCTTCTCAAAGCTCCCAAAAGGAGATCCAAAGAAATAGTAGGATGAATGAAGGATATTTGCTAACCTTATTCTCCAAAGGATCCATAACCTATTCTATTCAATGCCTACTCCCTCCGTTTCAGGTTATAAGAAGTTTTGACTTTAGTCAAAGTCAGACTACTTCAAGTTTGAATAATTTTATAGGCAAATATAGTAATATTTATAATACCAAATTAGTTTCATTAAATCAATAATTTAATATATTTTCATAATAAATTTGTCTTGGGTTGAAAATGTTATTATTTTTTTCTACAAACTAAGTCAAACCTAAAGCAGTTTGACTTTGACCAAAGTCAAAACATCTTATAACCTGAAATAGAAGTAGTACTATTTATCAGCAAAAAGTTGTGCACAGGTGTTTATCAGCTAAAACAATTCATATATAATTTGCAACGGAACATATTGTAGTTTTGTATATGATGGAGATATCAACACCATAGCGAGCTAAATGAACCTATTACAGAAGGCCCTAGCTTTCTGAGATGGTATTTTGATCTTGGATCCCCTCTTTGTTCCAACTAAGGACCTCCAAAACCAGGTTCCAGAAGCCCAAAGAGAGTGAGAGAGAACATTAGAACAAAGGAGAAGATAACCTCCCAAATTCACTGCATGGATCCATTTCACAAGATTTGCAATATCAAAAAAATGTAAAATAGCCAGCAACTAGTCAATAATTAAGCAGTAATCAGTTTTCACCATTTATGCATGCTGTAAAAAAACACTATTTATGTATATGTATGCTGTAAAAAACCTTGTTACTAATAAAAATTAAAGATATCATGTATAGCATACCACAAGGCAAATTGATAAACAATGAATTCCAGCACATGTGCATACAACAAAGGAGACATTAGTACTTAATTGGAAACAAGGAGATGCAGGCTATCCCATGAAGTTGAATAATAATCAAAATAGTAAAAAAGAAAAGAACTAATACAAGCAAGGACAAACCTCCTGAAAGAGCGTGAGGAGGCAATCCTGTTGGAGCTTCACAGGTGGTCATCCCAACCTGTTACTAGTCCAGACAAGATTAAATATGCCTCATCGCATTTTGGAGTTCTTTGGGATCCAATGCTTCACACAGTTAAGAATCTATATCCTGCAAAACACTTGTTTTTAGCAAATTGAAGTAGATAAGAACAATTTCTTTGACAACCAGATCAGCGGACGGAGAAAAACCATACAAGAATGTTATGTTTAAATGTTTCCAAAAAAACTAATCCCAGCACCATTCCAACAAAAAAGCAATATCATGTTGTATGCACATATGAGAAATGCCAACCTCATCAGAGTGACTTTGCATATGCTGCTTCAGATGAGCTGGCTTCTGGAAAGAAGCACCACACTCTTGGCAGGTGTGGTCACCTTCATGAACAACCTTTTCCCCATTTGACTTGTAGATTTCCGATTTGTCCAGTTCTTCCTATAGATAAATTTGAAGTGAGGGCATCAGATATTCATATAATGATTCAAATGGATAAGAGCAGAAGGAATTGACAAAAGCACAAATATATTGATTGATGGACCTAAACTCCAATCAGAGAACCATAACGGTCAAATAACTCAATTTAATTAATACAGTCCACATTGTCTTTAAAACATAAGGCATAATATGGCCCATATTCCTAAAATATCTAAGTAGTTTTATACCTTATGATGAGCAACCATGTGAGCTCGGATGAGACATTTTTTGGACCTAACAACCGTGCAAAATTCACACTTGTAGCGCCTTATATCCCTGTGTTGTGTTGCTTCAACCCTCATGTCTCCATCAATATCATCTCCAGAGCACATCTAATAGTAGGCAAATCAGATAGTTAGAAATTCGGCACACATAAATAAGTCATTTATATATAAAAAAAAGTAAACAAGTAAAACATTCAGAGGTAGCGATGTAGTCAGCAAGATAGCTGTAAAATGAGGAGAAGTCCATAACATGAACTGGGACGCATTGCAGTCTTTACTCTTTTTTTGACAGAGTGACCAAACAAAATACAGGTATAGCATATCTGCAGGTCGACATCTAAAATAAATCTCTACAATTCTGCATTTTCAATGAAATAACATCAGTGTGTTACAACTGGCTATCACTAATTGGTTAATCAAACAAATCAAAACAAAACTATGGTGCCTTGTCACTAACAAAAAGAAAAAAATATCAGCATATCATCCTCAGTTCGGTTAGAGGTCATCAAAGGAAAGAAAAAAAAAGGACAATATGTGTTTCTAGAGCATGTGTTCTCCATCAGTTAACACTAATGGAGATGGTATGGGATCCATCTTGAGATGCCTAGCCATGATTTCCAAGGTGACATAAATTTCCCTTCTAGCATCATGTGTCTTGTCCTCTACCAAAAATTCATGGACGACACCATCAACTTCAATCCAACTGCAACCCGGTTTTTTGTATATTTTCCTACTCAACATCTGCTTCCTCATATCCAAAGCTTCTTTCCATCTGTTTGATAAGGCATACATGTTCCAAAGAAGCACATAAACCCCATCATCCCCAGGTTCTCTCTTTATAATTTCCATTCCAGCAATCTCAGCTAATCTATCATTGCCATGAGCTAGGCATGCACTAAGAAGTGACCTCCAAATAACAATATCAGGCTCGACATCCATATGATCTATCAGAGCTTCTGCTTCTTCTAGAAGTCCACCCCGTCCTAACAGATCAACCATGCATCCATAGTGCTCAAGCCGGGGATCAATATGGTAGACTTCACGCATTTTATCAAATAACTCTCTGCCTTCTTGTATTAACCCAGCATGGCTGCATGCTGACAAAACTGAGACGAATGTCACACTGTTTGGAAGTATCCCAGACCTTAGCATATCCCAAAAGAGCTCAACAGCTTTCCTCCCATTACCCTGGACAGTGAAACTTGAAATCATAGTTGTCCATGTGAATGCGTCCTTCATCTGAACTTCTTCAAATACAGAAAATGCACTAGCAATGCTTCCACTCTTTGCATACATATCCATCAGAGCATTTGTAACAATTATATTGGTGGTGGCATTAGATTTGCTTCCATATCCATGAATGGCACGTCCAAGATCCAAAGCACCAATATCAGCACAAGCTGATAGCACCCCTACAATTGTAATATGGTTAGGACGGTGGCCCTCCAAAAGCATCTTACCAAATAGCTCAAGAGCTTGGATAGGCTGCTTGTCTTGAACATGACCAGTGATCAGTGCTGTCCAAGAAACAGTGCTCTTCATAGGCATCTGATAAAAGAATGACAAAGCTGAATCCACACCAACACACTTCATGTAACCATACAGCATGCTACCCCAAGTGACCTCATCTTTTACAAGCATTCTATCAAATACAGTCCGTGCAGGCTCAAACTTGCCACATCGACAATACATATCAACCAAAGCATTACAAACGACCAACTCAGAGTCCAATCCACACCGAAAAATCAGGCCATGCACCACGCTACCAATACGCTGATCCCCTAATCCACCAGAGGCCGAGAGGGCACCGACAGCAGCAAAGCCATCAGGGCGGTGGCCAGAAGCAATGGCGTGAGAGAACACGGATATAGCTTTCCAGTGGTGATCTAACTTGAGATGAAGGGACATGAGGCTGGTGAAGGAGATAATGTCAGGGTGGGGGATTTCATCAAACAACCTGCCTGCGTCAGCCGGTCGGCCAAACTCGGCATAGGACCGGAAGATTTTGCAGGAGATGGACTGCTGGTTGGGGTGGAGGCCGTGTGTGAGGGCCTGGGCGTGGATTCTTTGGAGCTCTCTTATGGTTTTGCACTGGGTGAGAAGGTGGTGGCAAACGCTTCTATTCATCCCCCCTCTCCTCAACGCAAGAAGCTCTCCCGAACAGCACAACCTGGAATTAGAGCTAAAATTACTAGGAAAAAAAGCTACAATTAACTCATACGACATCCACACTGCTTAGACTATTAACAATTTCGTGCTGTTTCAACGAACACTGACCACAAGCCCAGAATCTAAACGCACAGATCAGGATCGATTTGGTTAATACTATCTCATGCTTTTAACTGCTCAAATCGAAAGCGAAGAATTACCAACGCGATAACCAAATCGAAGAAACATATTCCTAACTCCTAAGTAGGCATCGGTTTTGGGCATGGTGGTTGTGTTTGCAAGCGAGGATTGGATGCCCACCTTGGAATCTTTGATGCGTTTGGACTGGAGGAGATCTTGGCTGCGACGAGGTGTGATTTCCCGCGCTTCTCCGTGAGGAGGATGGAGCGGCGGCGGCGGCGGCGGGGAGTGAG
More
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| CDS seq | ATGTGCTCTGGAGATGATATTGATGGAGACATGAGGGTTGAAGCAACACAACACAGGGATATAAGGCGCTACAAGTGTGAATTTTGCACGGTTGTTAGGTCCAAAAAATGTCTCATCCGAGCTCACATGGTTGCTCATCATAAGGAAGAACTGGACAAATCGGAAATCTACAAGTCAAATGGGGAAAAGGTTGTTCATGAAGGTGACCACACCTGCCAAGAGTGTGGTGCTTCTTTCCAGAAGCCAGCTCATCTGAAGCAGCATATGCAAAGTCACTCTGATGAGGTTGGCATTTCTCATATGTGCATACAACATGATATTGCTTTTTTGTTGGAATGGTGCTGGGATTAG |
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| Protein seq | MCSGDDIDGDMRVEATQHRDIRRYKCEFCTVVRSKKCLIRAHMVAHHKEELDKSEIYKSNGEKVVHEGDHTCQECGASFQKPAHLKQHMQSHSDEVGISHMCIQHDIAFLLEWCWD |
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| Function | Transcription factor IIIA [UniProtKB/Swiss-Prot:Q84MZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0116000 | Os02t0116000-01 | Chr02 | 853795 | 859876 | - | irgsp1_rep | ||
| CDS seq | ATGTGCTCTGGAGATGATATTGATGGAGACATGAGGGTTGAAGCAACACAACACAGGGATATAAGGCGCTACAAGTGTGAATTTTGCACGGTTGTTAGGTCCAAAAAATGTCTCATCCGAGCTCACATGGTTGCTCATCATAAGGAAGAACTGGACAAATCGGAAATCTACAAGTCAAATGGGGAAAAGGTTGTTCATGAAGGTGACCACACCTGCCAAGAGTGTGGTGCTTCTTTCCAGAAGCCAGCTCATCTGAAGCAGCATATGCAAAGTCACTCTGATGAGGTTGGCATTTCTCATATGTGCATACAACATGATATTGCTTTTTTGTTGGAATGGTGCTGGGATTAG
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| Protein seq | MCSGDDIDGDMRVEATQHRDIRRYKCEFCTVVRSKKCLIRAHMVAHHKEELDKSEIYKSNGEKVVHEGDHTCQECGASFQKPAHLKQHMQSHSDEVGISHMCIQHDIAFLLEWCWD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0116000 | RBH | 4.355234 | 3.131945 | 3.562899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02424 | RBH | 4.753245 | 3.271263 | 1.128929 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001170 | SBH | 1.969729 | 1.793535 | 9.181257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001220 | RBH | 0.368140 | 2.064712 | 2.453675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001160 | SBH | 2.497770 | 7.630672 | 19.181627 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001170 | SBH | 0.756425 | 0.315451 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001170 | SBH | 25.766518 | 19.676519 | 31.789097 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0014000 | SBH | 5.282294 | 10.2237125 | 9.17024 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001150 | SBH | 1.087723 | 0.088176 | 3.756507 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0014400 | SBH | 4.874372 | 8.242158 | 14.232982 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001180 | SBH | 0.248045 | 0.842364 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001120 | SBH | 1.634504 | 11.215104 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001180 | SBH | 4.976731 | 16.204031 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001210 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001220 | SBH | 0.642328 | 2.011215 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001180 | SBH | 0.576338 | 3.918135 | 3.010983 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001150 | SBH | 5.228672 | 9.308871 | 15.508390 |
