Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0945001 | OGI:01121600 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:41542086-41545870 | ||||||||
| Gene Symbol | GNS2, Gns2, OsGns2 | ||||||||||
| DNA seq | GCAGAAAAATATCCTGTAAATATATGATACAACAGCTGTGATCTTACTGAACAAACAAAGCTCATAGGGGCAGTCATCCATACCTCATGTCATAACAGTAGTGAGCTATTTGCCTGATGGTGGGATGAGATTACAAGGCTAACAAAAGATTAGCCTCTCTAATTGGTTGTCGATCCCTTAACTGCACTTCAAGTAATAAATGATATTTTTAGACTCTTCAATGATGCCCCAACTGTACACTGTAATTTCCTTCTGAGTTTCGCACCTGCTTGCTAGTATACAAGATAACCAGAATAAGTCCTTCAGTTTGTCACCTTTCAAAGAATTGTCTCCTCATGGTACCGCAGATTTCATCCGCCACAGCAGCATTTTCACGTAGGAATTTCTCAGCTTCTGCCTTGTTTGGAAGGAACTCACCATTGATCCAATACCCAGAATCATCCTTCATAATAACCCCAAGGGAAGAAGCCAGCTCCAGGATCTCTGATTCGTAGCAGATCCCCTTCCCAAATCTGATGTCAATGCCAGCTTCCTTCAGAGTTGCTGGAGCTAATTTGTTCTTGATTATCTGCACTGATATACCGATGCCAGTAGCCTGAAATGGCAGAATTTTCTTAATTGCATATTTACAAATGCTGTACACTTTACCTAGAATAATGCGCGCTCTTGTCTAGTGCTAGTATTCTAAGGAGGGAACCGGAGAAGGGAAATGAGAAGCATGAAAAGTTATGTACAATACCTGGGCCTCATTGTAGCGTAATTCCCTTCTTGAAGTCCTCATTCTGACTGCAGCATAGAATCCTAATGCATTGCCGCCACAAGCTACCTCCTTGAAGATTCCAGGAGTCTGATTTGAGCTCAACTTTGTTCTAACCTGCAAACATTAGCAATCAGAAGCTCTAAATAAGTTAGGCAGCATCAACACTAAACGATATTGAAGTATGCCATCCTGGTTAGTGCAAAAAAAGCAATCATCCCAAACCTGATTAACAAAAATAATCAGCGTTTCAGAGCGACTTAGTGTGTGCTGAATTTTTCGAAGTGCCCGAGTCATCAAGCGGGACTGCACATCTTCAGAATTCATATATATTTCACCTTCAAGTTCACATCTGGGAATAAGTGCTGCAACCTGTCAGAAGTCCAGTAAAAGCAAGGTAAACAAATATGTAGCAAAGCACAAGATATCAAATACATATTAGAAAAATGGATGTCCTGACAGTATGACAGTGCTAAAGAGCATCAGAAGTGAATAGCAGTCCAATTTTCAAATTTAGTAACTACTTATCCAAGTATTAGGCCTGTCATAGTAGGGAATGCATAAAATTTTAATAAGCCAATAAGGAATCAAATAGAAGAGAAAAAACTAATCCAAACTGACATTGCGGAAGAAACATACACTATCGACAACAACAACATCAATTGATCCACCAACAAGAGTGTTCACTATGCTCAAAGAATTTTCAGCAGAGTCAGGTTGGGCTATCAGGAGCTTTTCAACGTTTACACCAATGGCTTCGGCAACAGAAGGGTTAAAAGCATTTTCTGCATCAATATAAGCACAGCAGCCTGCAAATAGTCCCAGTCACAACTCCAATCATATAATGTAAAATTTAGAAGAAGGGTATACTCCAAAAAGAACAGCAAGGACCATAAACAAATACAGACCTCCTTTCTTTTGCGCTTCCTTGACAACATGAAGGGCGAGTGTTGTCTTCCCAGAGGCCTCTTTTCCAAATAATTCAACCATTCTACCCTGTTAAATATCTACAATAATTTTCAAACAGCACAACTAAAAGCAGTGTTCAAAACAGTATGCCACTACACTCACTGATCATATCAATCAAGGTAAGCCTGCAGTTTTAACTCTAAACATATATGCTATCAAGAAAAAAAAAAGGATGGATGATATGGACACATTTGACAGAAGTAAAGCTAAGCAAGATATGGGCATCAGTTCTACCTATAAATATATTTCCTAATCAGAAATACCATAGACAAAATGCAATTTTTTGTTGTCCAGCAAGAAGGAAAATACTGCCATCAACAAATAGTATTTTCACAACTAAAGAAGAGGGCTTTTGGCACTAATTTAACTAGTTCAACACATCATGGAGATTTCATTGGATTAACACAAAAGGGAAATTAGACATCAAAAGATGAAAAGCCCCACATGACACATTTGACTTTTAGAGTTCCCATTGCAACAAAATAGTGAACTAAGGCCGTGTTTAGTTTCCCCCCTATTCCCAACTTTCCATCACATCATACCACATCAAAAACTTTCCTACACACATAAACTTCCAACTTTTTTTCCAAACTCCCAACTTTCTTCAAACTTCCAACTTTTTTCAGGAACTAAACACACCCTAACTGAACAATAACACCATGCAGAAGACTTATTTGAACTTTGATCCTTATGTGTTATATCAGAAATATATGATTTAGGACCAAGGTAATATCATATGGAATGATATAGTGATAAAGAGTAATGATATCATTGGAATACTAAATATCTAGAATTCTAGATCTGGACAATATGAAAGCACATCATGACCTTTGGTAATCCACCAATGCCAAGAGCAATATCAAGCTTAAGAGAACCAGTGGAGATCACAGGTGTGCGCCTTGTGCGGGAGAACCGCTCCAAACATAAATTAGATTCTCTATCAAAATCACTTGCGAGTTGAGAGACAGCGACACTTAGTGTCGACTCTTTCTCGAGAACTTTTACACCATCGAGTGGGGGATCAGTCTCATAGTCTAATTGCACATCAACTGAAAAGAATCATATCATTAGAAGGAAAAAAGAAATGAAATGTTTGTACGGCAGAAACTGTGAGTATTGATAATAAGTGGACAAACATTGAGCATACCTGAGGTTGACATCGAACAACTTTTTGATAAGAACCAACAAAATCTGTCGTTTATCCAATTCTAGCAAATCACAGGGAAGTAAAGATGGACTGCATTACTTCGTAGTTCAAATATTTGACACATATATCATAAATTCAAGAAAAATAAAGCGTTCCAGATCTTAATGTTTTAAGAGCGGCAAGCTGTGAACCAAACATCACATACATTATAAGTGTTTTTTCATTAACAACTTGAGCTGAACATATCTGTGTTCCGTATTATTGTCAGAATGGAAGAAAAAAAATGAAATCCAACGTTTGTTGGAACACTTGACAGAACACAAAAGGCAGAACCATACTACACTGCGCAGAGCTCATTTTCTCCTCACACACTCACAACCCACTCACTGACTCACATCGGTACTTACGGGCAAAAACCTGGAGCCGCCTAAGTGAAACGCTAATACCCTCGCTCTTTTTAATCCCCTGAGTTTCAAATTCCCACAAATTCAGTCTAAAACGCAAAATCAATCAACACCACACTTGGATACCCCCTCTTCTAAATCTATCTCAAGCTGGAAAGAGGGCCTTAGAGATGGGGAAGTATTCGAGGGCGTACCTGGAGGGGAAAGCGGCGGAGAGGAGAGGACACGGGAGGCGCGCCATTACAGAAGCCCGCGCCGGAGAGGTTGGCACGGGCGGCAGATCTCCGGAGGAGAGCGGAGGAGGCTACGAGAGCTCGCATGGAGGCTGGGCAGGGAAGCGCACACGGCTGGGCGGCGGGGCAGTCGCAAGCGAAGGGGGCGGGGGCGCCGCCGCGCCGGGAGCAGGCGCCGCCGGTGGTGGAGGATTCGAACGCGCCGCCACACGCGAAGCCGTTGCAAGCGGGAGGGGAAGAACCCGCCGTCGCGTACTCGCGTATAGCCGCCGCCC
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| CDS seq | ATGCGAGCTCTCGTAGCCTCCTCCGCTCTCCTCCGGAGATCTGCCGCCCGTGCCAACCTCTCCGGCGCGGGCTTCTGTAATGGCGCGCCTCCCGTGTCCTCTCCTCTCCGCCGCTTTCCCCTCCAGAATTGGATAAACGACAGATTTTGTTGGTTCTTATCAAAAAGTTGTTCGATGTCAACCTCAGTTGATGTGCAATTAGACTATGAGACTGATCCCCCACTCGATGGTGTAAAAGTTCTCGAGAAAGAGTCGACACTAAGTGTCGCTGTCTCTCAACTCGCAAGTGATTTTGATAGAGAATCTAATTTATGTTTGGAGCGGTTCTCCCGCACAAGGCGCACACCTGTGATCTCCACTGGTTCTCTTAAGCTTGATATTGCTCTTGGCATTGGTGGATTACCAAAGGGTAGAATGGTTGAATTATTTGGAAAAGAGGCCTCTGGGAAGACAACACTCGCCCTTCATGTTGTCAAGGAAGCGCAAAAGAAAGGAGGCTGCTGTGCTTATATTGATGCAGAAAATGCTTTTAACCCTTCTGTTGCCGAAGCCATTGGTGTAAACGTTGAAAAGCTCCTGATAGCCCAACCTGACTCTGCTGAAAATTCTTTGAGCATAGTGAACACTCTTGTTGGTGGATCAATTGATGTTGTTGTTGTCGATAGTGTTGCAGCACTTATTCCCAGATGTGAACTTGAAGGTGAAATATATATGAATTCTGAAGATGTGCAGTCCCGCTTGATGACTCGGGCACTTCGAAAAATTCAGCACACACTAAGTCGCTCTGAAACGCTGATTATTTTTGTTAATCAGGTTAGAACAAAGTTGAGCTCAAATCAGACTCCTGGAATCTTCAAGGAGGTAGCTTGTGGCGGCAATGCATTAGGATTCTATGCTGCAGTCAGAATGAGGACTTCAAGAAGGGAATTACGCTACAATGAGGCCCAGGCTACTGGCATCGGTATATCAGTGCAGATAATCAAGAACAAATTAGCTCCAGCAACTCTGAAGGAAGCTGGCATTGACATCAGATTTGGGAAGGGGATCTGCTACGAATCAGAGATCCTGGAGCTGGCTTCTTCCCTTGGGGTTATTATGAAGGATGATTCTGGGTATTGGATCAATGGTGAGTTCCTTCCAAACAAGGCAGAAGCTGAGAAATTCCTACGTGAAAATGCTGCTGTGGCGGATGAAATCTGCGGTACCATGAGGAGACAATTCTTTGAAAGGTGA
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| Protein seq | MRALVASSALLRRSAARANLSGAGFCNGAPPVSSPLRRFPLQNWINDRFCWFLSKSCSMSTSVDVQLDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLKLDIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPDSAENSLSIVNTLVGGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQSRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEFLPNKAEAEKFLRENAAVADEICGTMRRQFFER |
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| Function | DNA repair protein recA homolog 2, mitochondrial [UniProtKB/Swiss-Prot:Q8RY99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0945001 | Os01t0945001-01 | Chr01 | 41542086 | 41545870 | - | irgsp1_rep | ||
| CDS seq | ATGCGAGCTCTCGTAGCCTCCTCCGCTCTCCTCCGGAGATCTGCCGCCCGTGCCAACCTCTCCGGCGCGGGCTTCTGTAATGGCGCGCCTCCCGTGTCCTCTCCTCTCCGCCGCTTTCCCCTCCAGAATTGGATAAACGACAGATTTTGTTGGTTCTTATCAAAAAGTTGTTCGATGTCAACCTCAGTTGATGTGCAATTAGACTATGAGACTGATCCCCCACTCGATGGTGTAAAAGTTCTCGAGAAAGAGTCGACACTAAGTGTCGCTGTCTCTCAACTCGCAAGTGATTTTGATAGAGAATCTAATTTATGTTTGGAGCGGTTCTCCCGCACAAGGCGCACACCTGTGATCTCCACTGGTTCTCTTAAGCTTGATATTGCTCTTGGCATTGGTGGATTACCAAAGGGTAGAATGGTTGAATTATTTGGAAAAGAGGCCTCTGGGAAGACAACACTCGCCCTTCATGTTGTCAAGGAAGCGCAAAAGAAAGGAGGCTGCTGTGCTTATATTGATGCAGAAAATGCTTTTAACCCTTCTGTTGCCGAAGCCATTGGTGTAAACGTTGAAAAGCTCCTGATAGCCCAACCTGACTCTGCTGAAAATTCTTTGAGCATAGTGAACACTCTTGTTGGTGGATCAATTGATGTTGTTGTTGTCGATAGTGTTGCAGCACTTATTCCCAGATGTGAACTTGAAGGTGAAATATATATGAATTCTGAAGATGTGCAGTCCCGCTTGATGACTCGGGCACTTCGAAAAATTCAGCACACACTAAGTCGCTCTGAAACGCTGATTATTTTTGTTAATCAGGTTAGAACAAAGTTGAGCTCAAATCAGACTCCTGGAATCTTCAAGGAGGTAGCTTGTGGCGGCAATGCATTAGGATTCTATGCTGCAGTCAGAATGAGGACTTCAAGAAGGGAATTACGCTACAATGAGGCCCAGGCTACTGGCATCGGTATATCAGTGCAGATAATCAAGAACAAATTAGCTCCAGCAACTCTGAAGGAAGCTGGCATTGACATCAGATTTGGGAAGGGGATCTGCTACGAATCAGAGATCCTGGAGCTGGCTTCTTCCCTTGGGGTTATTATGAAGGATGATTCTGGGTATTGGATCAATGGTGAGTTCCTTCCAAACAAGGCAGAAGCTGAGAAATTCCTACGTGAAAATGCTGCTGTGGCGGATGAAATCTGCGGTACCATGAGGAGACAATTCTTTGAAAGGTGA
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| Protein seq | MRALVASSALLRRSAARANLSGAGFCNGAPPVSSPLRRFPLQNWINDRFCWFLSKSCSMSTSVDVQLDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLKLDIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPDSAENSLSIVNTLVGGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQSRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEFLPNKAEAEKFLRENAAVADEICGTMRRQFFER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0945001 | RBH | 1.138406 | 1.010100 | 1.030747 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71690 | RBH | 2.517797 | 2.589221 | 0.362800 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046800 | SBH | 0.086529 | 4.234752 | 27.286198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046330 | RBH | 0.000000 | 0.000000 | 0.601474 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046750 | SBH | 0.136139 | 1.193382 | 1.276632 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046230 | RBH | 0.000000 | 0.041224 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045730 | RBH | 0.562816 | 7.564522 | 2.278914 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681200 | SBH | 3.643111 | 1.8056825 | 0.6814965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045260 | RBH | 0.0 | 0.330321 | 0.365714 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0647100 | SBH | 3.406284 | 5.9995725 | 25.9044715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045820 | RBH | 0.081384 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045670 | RBH | 0.573194 | 6.439983 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046000 | RBH | 0.0 | 5.093110 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045980 | RBH | 0.182381 | 0.096035 | 0.195606 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045730 | RBH | 0.0 | 2.980042 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046010 | RBH | 0.293425 | 2.027992 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045840 | RBH | 0.000000 | 0.0 | 0.932460 |
