Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0937050 | OGI:01121080 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:41139355-41140629 | ||||||||
| Gene Symbol | OsCLP, CLP | ||||||||||
| DNA seq | CTAGGCGGCGAGAGTGAAGTTGAAGTTGCTGCAGGTGGTCTGCCTCCCCCAGAGCAGGCCGCTGAATCCGAGCCGCTGCTTCTCCTCGTCGAACACCACCAGGTTGTTCTCCATCTGGAACCCTCCGATGATCGCCGCCGGCGGCGGCGGGCTGCCCTTCTCCCCCTTCACCTTCACCACCGCGAGGCACGCCGTGTTGTCGCTCACCTGCGCCATCGAGTTGCCGCCGAACACCGTCCAGTTCTTGCCGCCCTCCAGCACCAGGTCGATCTGCGGCACGGCGTAGCCCAGCCGCGTCGACCCCAGATCGCGCGAGTCGTAGCACAGCTCGAACGGCGCCGCCGGCGGCGGCGGCGGCGTGACGCGCTTCCGGCCGGCGGTGGCCCTGGCGAACGCGTCGACCACCGCTCGGTACACGTCCGGCCGGAGCGCCGTGTACGGGATCCTCGTGCACAGCTCGACGACGAGCGGCTCTTGGGTGTAGAGCTGCACCTGCTCCTGGTTCACGGCGATCTTGGTCGCCGAGATGAAGTATCCGGGGAGATCCTTGTTGCGGTGGAGGGGAGTTTCGCCGGCGAGCGTCGCCGCCACGTCGGGACGCCCCGGCGGGAGGAGGAAGAGCGGGCCGCCGCCGAAGATCGCCACGCCGTCGCCGCCGCCGCCGCTGGGGAGGCAGAGCGCGAACTTGTTGGCGACCTTCTGCGACCGCGCCACCTGCGCCTGCAGCGCGAGCCTGGTGCGCGCGAGCCCGGCGACGCCGACGGCGCCGGCGGGGAGCTTCGCGAGGAGGGAATCCGGCGCGCAGGAGGTGACGGCGGCGAACGACACCGGGTAGAGCGGGTTCTTGCCGTCGGTGGCGTTCGCCGACAGCCTCGTCCGCGTCAGGTCGGCCGTCGCCGACTCGCCGGAGAAGGGGTTGTACGGGTGGGCGGTGCACTTGCACCGGAACGGGTCCTCGACGTCGGCGCGGCCATAGCCATTGTGGGGGCATCCCGGCGGGTGGTAGCTGTGCGCGTGCATGCAGAAGTGGTGGTGGCACTCCAGCGTCGGGTGCGCGGCGGCGCACGACATCCAGACGAGCGCGCCGGCGAGGTCGAGGACGAGCGGGCGGCCGTCCTTGATGGGGACGGTGTAGAGCGAGGTCGCCGCGTCCTTGGTGATGGCCGCGACAAGCGGCTTGCCATTGCCATTGCCATTGGCACTAGCTGCTGCCCATGGCAACGACGAGGCCAAGGCGACGCAGAGCGAGACGGCGAGGAGGAGGTGGAGCGACAT
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| CDS seq | ATGTCGCTCCACCTCCTCCTCGCCGTCTCGCTCTGCGTCGCCTTGGCCTCGTCGTTGCCATGGGCAGCAGCTAGTGCCAATGGCAATGGCAATGGCAAGCCGCTTGTCGCGGCCATCACCAAGGACGCGGCGACCTCGCTCTACACCGTCCCCATCAAGGACGGCCGCCCGCTCGTCCTCGACCTCGCCGGCGCGCTCGTCTGGATGTCGTGCGCCGCCGCGCACCCGACGCTGGAGTGCCACCACCACTTCTGCATGCACGCGCACAGCTACCACCCGCCGGGATGCCCCCACAATGGCTATGGCCGCGCCGACGTCGAGGACCCGTTCCGGTGCAAGTGCACCGCCCACCCGTACAACCCCTTCTCCGGCGAGTCGGCGACGGCCGACCTGACGCGGACGAGGCTGTCGGCGAACGCCACCGACGGCAAGAACCCGCTCTACCCGGTGTCGTTCGCCGCCGTCACCTCCTGCGCGCCGGATTCCCTCCTCGCGAAGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGGCTCGCGCGCACCAGGCTCGCGCTGCAGGCGCAGGTGGCGCGGTCGCAGAAGGTCGCCAACAAGTTCGCGCTCTGCCTCCCCAGCGGCGGCGGCGGCGACGGCGTGGCGATCTTCGGCGGCGGCCCGCTCTTCCTCCTCCCGCCGGGGCGTCCCGACGTGGCGGCGACGCTCGCCGGCGAAACTCCCCTCCACCGCAACAAGGATCTCCCCGGATACTTCATCTCGGCGACCAAGATCGCCGTGAACCAGGAGCAGGTGCAGCTCTACACCCAAGAGCCGCTCGTCGTCGAGCTGTGCACGAGGATCCCGTACACGGCGCTCCGGCCGGACGTGTACCGAGCGGTGGTCGACGCGTTCGCCAGGGCCACCGCCGGCCGGAAGCGCGTCACGCCGCCGCCGCCGCCGGCGGCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGGCTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAGCCCGCCGCCGCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAG
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| Protein seq | MSLHLLLAVSLCVALASSLPWAAASANGNGNGKPLVAAITKDAATSLYTVPIKDGRPLVLDLAGALVWMSCAAAHPTLECHHHFCMHAHSYHPPGCPHNGYGRADVEDPFRCKCTAHPYNPFSGESATADLTRTRLSANATDGKNPLYPVSFAAVTSCAPDSLLAKLPAGAVGVAGLARTRLALQAQVARSQKVANKFALCLPSGGGGDGVAIFGGGPLFLLPPGRPDVAATLAGETPLHRNKDLPGYFISATKIAVNQEQVQLYTQEPLVVELCTRIPYTALRPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGYAVPQIDLVLEGGKNWTVFGGNSMAQVSDNTACLAVVKVKGEKGSPPPPAAIIGGFQMENNLVVFDEEKQRLGFSGLLWGRQTTCSNFNFTLAA |
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| Function | Chitinase CLP [UniProtKB/Swiss-Prot:Q8S1V1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0937050 | Os01t0937050-01 | Chr01 | 41139355 | 41140629 | - | irgsp1_rep | ||
| CDS seq | ATGTCGCTCCACCTCCTCCTCGCCGTCTCGCTCTGCGTCGCCTTGGCCTCGTCGTTGCCATGGGCAGCAGCTAGTGCCAATGGCAATGGCAATGGCAAGCCGCTTGTCGCGGCCATCACCAAGGACGCGGCGACCTCGCTCTACACCGTCCCCATCAAGGACGGCCGCCCGCTCGTCCTCGACCTCGCCGGCGCGCTCGTCTGGATGTCGTGCGCCGCCGCGCACCCGACGCTGGAGTGCCACCACCACTTCTGCATGCACGCGCACAGCTACCACCCGCCGGGATGCCCCCACAATGGCTATGGCCGCGCCGACGTCGAGGACCCGTTCCGGTGCAAGTGCACCGCCCACCCGTACAACCCCTTCTCCGGCGAGTCGGCGACGGCCGACCTGACGCGGACGAGGCTGTCGGCGAACGCCACCGACGGCAAGAACCCGCTCTACCCGGTGTCGTTCGCCGCCGTCACCTCCTGCGCGCCGGATTCCCTCCTCGCGAAGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGGCTCGCGCGCACCAGGCTCGCGCTGCAGGCGCAGGTGGCGCGGTCGCAGAAGGTCGCCAACAAGTTCGCGCTCTGCCTCCCCAGCGGCGGCGGCGGCGACGGCGTGGCGATCTTCGGCGGCGGCCCGCTCTTCCTCCTCCCGCCGGGGCGTCCCGACGTGGCGGCGACGCTCGCCGGCGAAACTCCCCTCCACCGCAACAAGGATCTCCCCGGATACTTCATCTCGGCGACCAAGATCGCCGTGAACCAGGAGCAGGTGCAGCTCTACACCCAAGAGCCGCTCGTCGTCGAGCTGTGCACGAGGATCCCGTACACGGCGCTCCGGCCGGACGTGTACCGAGCGGTGGTCGACGCGTTCGCCAGGGCCACCGCCGGCCGGAAGCGCGTCACGCCGCCGCCGCCGCCGGCGGCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGGCTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAGCCCGCCGCCGCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAG
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| Protein seq | MSLHLLLAVSLCVALASSLPWAAASANGNGNGKPLVAAITKDAATSLYTVPIKDGRPLVLDLAGALVWMSCAAAHPTLECHHHFCMHAHSYHPPGCPHNGYGRADVEDPFRCKCTAHPYNPFSGESATADLTRTRLSANATDGKNPLYPVSFAAVTSCAPDSLLAKLPAGAVGVAGLARTRLALQAQVARSQKVANKFALCLPSGGGGDGVAIFGGGPLFLLPPGRPDVAATLAGETPLHRNKDLPGYFISATKIAVNQEQVQLYTQEPLVVELCTRIPYTALRPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGYAVPQIDLVLEGGKNWTVFGGNSMAQVSDNTACLAVVKVKGEKGSPPPPAAIIGGFQMENNLVVFDEEKQRLGFSGLLWGRQTTCSNFNFTLAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0937050 | RBH | 0.0 | 0.0 | 0.468014 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71080 | RBH | 0.0 | 0.0 | 0.102541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0937000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046340 | SBH | 0.0 | 7.870750 | 2.587716 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045850 | SBH | 0.0 | 0.846975 | 0.220155 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046240 | SBH | 0.0 | 7.892929 | 0.967200 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045770 | RBH | 0.0 | 0.358690 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045350 | SBH | 0.0 | 10.071595 | 2.336915 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677300 | SBH | 0 | 0.04469 | 0.0094425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044870 | SBH | 0.000000 | 0.337265 | 0.080763 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679300 | RBH | 0.0736575 | 0.022173 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045310 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045260 | RBH | 0.0 | 13.380577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045580 | SBH | 0.0 | 2.019200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045600 | SBH | 0.126164 | 0.839438 | 0.505058 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045310 | SBH | 0.0 | 17.938789 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045680 | SBH | 0.0 | 1.770912 | 0.731330 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045390 | SBH | 0.0 | 0.479929 | 1.076521 |
