Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0931000 | OGI:01120000 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:40852489-40852947 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCACCAACCTCGAGTCCTGCTTCCACCTCGCCCAGCTCGCGCACCATCTCCTCCGCGACGCGGCGGCGGGCGGCGGCGCCGCCGCGAGCGTGGTGAACATCTCCTCCACCGCGGCGTTCTACGCCGCGCCGCACCTGGCGGTGTACTCGGCGACCAAGGGCGGCATGAACCAGCTCACCCGGTGCCTCGCCGCCGAGTGGGCGCGCGACGGCGTGCGCGTCAACGCCGTCGCGCCGGGGGCCACCCGCACCGACATCTGCGACACCAGCGGCGTGGCGCTGGGCGAGAAGACGAGGCGCAGGCTGGCGGACGCCGGCGCCATGGACCGCGTCCCCATCCGCCGCATCGGCGAGCCCGAGGAGGTCGCCGCCGCCGTCGTCTTCCTCTGCATGCCGGCCGCCTCCTACATCACCGGCCAGGTCATCTGCGTCGACGGCGGCCGCACACTTCTGTAG
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| CDS seq | ATGGCCACCAACCTCGAGTCCTGCTTCCACCTCGCCCAGCTCGCGCACCATCTCCTCCGCGACGCGGCGGCGGGCGGCGGCGCCGCCGCGAGCGTGGTGAACATCTCCTCCACCGCGGCGTTCTACGCCGCGCCGCACCTGGCGGTGTACTCGGCGACCAAGGGCGGCATGAACCAGCTCACCCGGTGCCTCGCCGCCGAGTGGGCGCGCGACGGCGTGCGCGTCAACGCCGTCGCGCCGGGGGCCACCCGCACCGACATCTGCGACACCAGCGGCGTGGCGCTGGGCGAGAAGACGAGGCGCAGGCTGGCGGACGCCGGCGCCATGGACCGCGTCCCCATCCGCCGCATCGGCGAGCCCGAGGAGGTCGCCGCCGCCGTCGTCTTCCTCTGCATGCCGGCCGCCTCCTACATCACCGGCCAGGTCATCTGCGTCGACGGCGGCCGCACACTTCTGTAG
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| Protein seq | MATNLESCFHLAQLAHHLLRDAAAGGGAAASVVNISSTAAFYAAPHLAVYSATKGGMNQLTRCLAAEWARDGVRVNAVAPGATRTDICDTSGVALGEKTRRRLADAGAMDRVPIRRIGEPEEVAAAVVFLCMPAASYITGQVICVDGGRTLL |
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| Function | Tropinone reductase homolog At2g29260, chloroplastic [UniProtKB/Swiss-Prot:Q9ZW12] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0931000 | Os01t0931000-00 | Chr01 | 40852489 | 40852947 | + | irgsp1_rep | ||
| CDS seq | ATGGCCACCAACCTCGAGTCCTGCTTCCACCTCGCCCAGCTCGCGCACCATCTCCTCCGCGACGCGGCGGCGGGCGGCGGCGCCGCCGCGAGCGTGGTGAACATCTCCTCCACCGCGGCGTTCTACGCCGCGCCGCACCTGGCGGTGTACTCGGCGACCAAGGGCGGCATGAACCAGCTCACCCGGTGCCTCGCCGCCGAGTGGGCGCGCGACGGCGTGCGCGTCAACGCCGTCGCGCCGGGGGCCACCCGCACCGACATCTGCGACACCAGCGGCGTGGCGCTGGGCGAGAAGACGAGGCGCAGGCTGGCGGACGCCGGCGCCATGGACCGCGTCCCCATCCGCCGCATCGGCGAGCCCGAGGAGGTCGCCGCCGCCGTCGTCTTCCTCTGCATGCCGGCCGCCTCCTACATCACCGGCCAGGTCATCTGCGTCGACGGCGGCCGCACACTTCTGTAG
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| Protein seq | MATNLESCFHLAQLAHHLLRDAAAGGGAAASVVNISSTAAFYAAPHLAVYSATKGGMNQLTRCLAAEWARDGVRVNAVAPGATRTDICDTSGVALGEKTRRRLADAGAMDRVPIRRIGEPEEVAAAVVFLCMPAASYITGQVICVDGGRTLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0931000 | RBH | 0.427989 | 0.272740 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g70540 | RBH | 0.144016 | 0.052100 | 0.045893 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0045890 | RBH | 0.113283 | 1.367886 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045400 | SBH | 0.152701 | 0.303920 | 0.196495 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0045790 | RBH | 0.143777 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045250 | RBH | 0.041123 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0044830 | RBH | 0.508915 | 0.0 | 1.298544 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0670800 | SBH | 0.66499 | 2.305116 | 0.3631925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044340 | SBH | 0.061011 | 0.193947 | 0.131446 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0672700 | RBH | 2.8775755 | 2.6873245 | 0.6345295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044800 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0044740 | RBH | 0.089520 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045060 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045050 | RBH | 0.447781 | 0.413500 | 0.137274 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044820 | SBH | 0.000000 | 1.521675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045220 | RBH | 0.0 | 0.437322 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0044910 | RBH | 0.722135 | 0.0 | 0.0 |
