Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0892300 | OGI:01115060 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:38795480-38797375 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACCATACCGCGTTGAGCTTCTGAGTTCATGAGCTGCAACTTTTCCTTTCCACCCGCTGAAATCTGAATCCTCAAATGGTAGCAACAAAGTAATCTCATACAGTCATACTGAAGCTTTGCTGTGGCTACGTCAGGCCGGTGACATCGGATCAGTCGGTGAGTTTCGTAGAACACCTTGCTTGTTCATGCCTTTAGGTTGAAGGCAGCTCTGTGGCATCTCTACACCTGAAATCGAGTACATAGTTTATTCATGTTACAAGTCTTTCTTTTTTATGCAACTTTTGAGCAGGTCACACGGGAATTTAGAAGCTGCAACCTTTCGTCAGACGAACTGTCTGTTTCTAGCCCACCTCTGCAATGGCTGATGGTGCCAAGCTTCTCCTGTGGTTGCTGCTCTTGAGCAGCTCGCCGTGGTGTTTTTGTTCTGAACTTGATGTCCAATGCCTGGAGACACTCTATCGATCAGTGATAGATTCCAACGGCATACTCCAATCCTCATGGACTTTTGTTGACAACGGTACTGACGGGTACATATGCAAATTTACTGGTGTGGAGTGCTGGCATCCTGACGAGAACAGGGTACTTTCTTTGCGTCTCGGTAACCTAGGACTTCAGGGCCCATTTCCTCAAGGTCTGCAGAGCTGTACAAGCATGATTGGCCTGGATCTGTCTAGTAACATTTTTTCAGGACCAATCCCTGCTGACATCGCCACGCAGGTTCCCTGTCTAACATCTTTGGATCTCTCATACAACAGTTTTTCAGGTCCAATACCAGCCAGCATCTCAAATATGACATACCTGAACACACTCAACCTTCAGCACAACCAATTCAGCGGTGAAATTCCAAGGCAATTCGATTCAATTGGCCGGTTGATTTCGTTTAATGTTGCTGATAATTTACTATCAGGGCCTATTCCATCCTCATTACAGAAATTTTCGGCTTCAAATTTTGCTGAAAACCAAGGCTTGTGTGGTGCTCCGTTGGATAACTGTCCCAGGAGGAGGAGATGGAGACTCAGGCTGCACAGAATCAACGACGAGTCCAGCATCGGAGCGGCTGTTGGTTTCGTCGTTGGGTTCGTGGTGGCCTTCTACTTCCCTCACTGGTTTGTCTTCTCCAAGAGGCTTCATCCCTACATCTTTCAAATATGGTCCATTCCTTCTGGAAATCTATCTGCCAACCTGCGAAGAACATGAGTCCATCAACTTATACTGATTTCTCTCTTTAGAGGTATTGATTAGTTTTTCATGCGAATGCAAAATAACCAAGAAATTAGCCTTGAATATTATTAGCCCTGGCTCATTCAAGATTCCTAAGGAAAAAAAATGGTGATGCCGGTGTTGAATCCTGTAAAAGGCTAAGCGCTAATTAGGATGTCACGTGCATTCCAGTCTTTAGGTTTTTTTTCAAGAGTTCTTATCTCATGCTAAAAATCTTACGGAATAAGGTTGTAAGACTACAATCCTTAAGAATCTCTAAATTTTCCCCGGAAAAAGACAAACCATCAAGCTCAAAAAATAATAATACAATAATGGAAGACGACGAGCCAAACGAATATAGGAAAAAAAATCCTATGGTTTCAATTCCTTCACTAATCATTTGAAAATCCTATAAACTGGATGAGTGCCTATCATTGTTTTTTTTACTAAAATGGACTGAGCACCTCCATAGAAACATCTCGATTCAATATTCCAGTGTTGAATGAATTTGAGTGAAAATTATCTGATCGTTTATTAGCACAATAGTCAGAAGAGTACCTTTACAGTGGTTTCGGTAGTATTCTGGAATTAAGTTTGAAAATATAATGTCCATTAATTTTTTTTCTCAGTAATATCTGGGATGTAATTTTTTGACACATATACCGTCGTCGCTAAGGGAGAGTGTGAAAACAGCC
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| CDS seq | ATGGCTGATGGTGCCAAGCTTCTCCTGTGGTTGCTGCTCTTGAGCAGCTCGCCGTGGTGTTTTTGTTCTGAACTTGATGTCCAATGCCTGGAGACACTCTATCGATCAGTGATAGATTCCAACGGCATACTCCAATCCTCATGGACTTTTGTTGACAACGGTACTGACGGGTACATATGCAAATTTACTGGTGTGGAGTGCTGGCATCCTGACGAGAACAGGGTACTTTCTTTGCGTCTCGGTAACCTAGGACTTCAGGGCCCATTTCCTCAAGGTCTGCAGAGCTGTACAAGCATGATTGGCCTGGATCTGTCTAGTAACATTTTTTCAGGACCAATCCCTGCTGACATCGCCACGCAGGTTCCCTGTCTAACATCTTTGGATCTCTCATACAACAGTTTTTCAGGTCCAATACCAGCCAGCATCTCAAATATGACATACCTGAACACACTCAACCTTCAGCACAACCAATTCAGCGGTGAAATTCCAAGGCAATTCGATTCAATTGGCCGGTTGATTTCGTTTAATGTTGCTGATAATTTACTATCAGGGCCTATTCCATCCTCATTACAGAAATTTTCGGCTTCAAATTTTGCTGAAAACCAAGGCTTGTGTGGTGCTCCGTTGGATAACTGTCCCAGGAGGAGGAGATGGAGACTCAGGCTGCACAGAATCAACGACGAGTCCAGCATCGGAGCGGCTGTTGGTTTCGTCGTTGGGTTCGTGGTGGCCTTCTACTTCCCTCACTGGTTTGTCTTCTCCAAGAGGCTTCATCCCTACATCTTTCAAATATGGTCCATTCCTTCTGGAAATCTATCTGCCAACCTGCGAAGAACATGA
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| Protein seq | MADGAKLLLWLLLLSSSPWCFCSELDVQCLETLYRSVIDSNGILQSSWTFVDNGTDGYICKFTGVECWHPDENRVLSLRLGNLGLQGPFPQGLQSCTSMIGLDLSSNIFSGPIPADIATQVPCLTSLDLSYNSFSGPIPASISNMTYLNTLNLQHNQFSGEIPRQFDSIGRLISFNVADNLLSGPIPSSLQKFSASNFAENQGLCGAPLDNCPRRRRWRLRLHRINDESSIGAAVGFVVGFVVAFYFPHWFVFSKRLHPYIFQIWSIPSGNLSANLRRT |
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| Function | Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [UniProtKB/Swiss-Prot:Q9ASS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0892300 | Os01t0892300-01 | Chr01 | 38795480 | 38797375 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGATGGTGCCAAGCTTCTCCTGTGGTTGCTGCTCTTGAGCAGCTCGCCGTGGTGTTTTTGTTCTGAACTTGATGTCCAATGCCTGGAGACACTCTATCGATCAGTGATAGATTCCAACGGCATACTCCAATCCTCATGGACTTTTGTTGACAACGGTACTGACGGGTACATATGCAAATTTACTGGTGTGGAGTGCTGGCATCCTGACGAGAACAGGGTACTTTCTTTGCGTCTCGGTAACCTAGGACTTCAGGGCCCATTTCCTCAAGGTCTGCAGAGCTGTACAAGCATGATTGGCCTGGATCTGTCTAGTAACATTTTTTCAGGACCAATCCCTGCTGACATCGCCACGCAGGTTCCCTGTCTAACATCTTTGGATCTCTCATACAACAGTTTTTCAGGTCCAATACCAGCCAGCATCTCAAATATGACATACCTGAACACACTCAACCTTCAGCACAACCAATTCAGCGGTGAAATTCCAAGGCAATTCGATTCAATTGGCCGGTTGATTTCGTTTAATGTTGCTGATAATTTACTATCAGGGCCTATTCCATCCTCATTACAGAAATTTTCGGCTTCAAATTTTGCTGAAAACCAAGGCTTGTGTGGTGCTCCGTTGGATAACTGTCCCAGGAGGAGGAGATGGAGACTCAGGCTGCACAGAATCAACGACGAGTCCAGCATCGGAGCGGCTGTTGGTTTCGTCGTTGGGTTCGTGGTGGCCTTCTACTTCCCTCACTGGTTTGTCTTCTCCAAGAGGCTTCATCCCTACATCTTTCAAATATGGTCCATTCCTTCTGGAAATCTATCTGCCAACCTGCGAAGAACATGA
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| Protein seq | MADGAKLLLWLLLLSSSPWCFCSELDVQCLETLYRSVIDSNGILQSSWTFVDNGTDGYICKFTGVECWHPDENRVLSLRLGNLGLQGPFPQGLQSCTSMIGLDLSSNIFSGPIPADIATQVPCLTSLDLSYNSFSGPIPASISNMTYLNTLNLQHNQFSGEIPRQFDSIGRLISFNVADNLLSGPIPSSLQKFSASNFAENQGLCGAPLDNCPRRRRWRLRLHRINDESSIGAAVGFVVGFVVAFYFPHWFVFSKRLHPYIFQIWSIPSGNLSANLRRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0892300 | RBH | 0.138482 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66820 | RBH | 0.093649 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0891601 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043240 | RBH | 0.180585 | 1.247211 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043180 | RBH | 0.556750 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042640 | RBH | 0.067789 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042230 | RBH | 0.0 | 0.0 | 0.678016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0639200 | RBH | 0.306632 | 0.617373 | 0.007036 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0640000 | RBH | 0.229559 | 0.417917 | 0.2473095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023220 | SBH | 0.0 | 0.055354 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042420 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042630 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042330 | RBH | 0.0 | 0.0 | 0.595410 |
