Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0890200 | OGI:01114740 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:38704701-38707473 | ||||||||
| Gene Symbol | SDRLK-19 | ||||||||||
| DNA seq | ATGGCGCCACGTCTTTCTGCCTGCCTTGTGTTCTTACTCATATTGGTTCTTTCACTCCAAGAGTCTCCCTTGCATGCTGCTGATACTCTCACTGCGGAACAGCCGCTCTCTGCTGATCAGAAATTGATCTCTCAGGATGGCAAGTTCGCTCTGGGGTTCTTCCAGCCTGCAGGTGAGCATTTTCTTTTTATTTCTCAGTAAGCATTCATATAATTCATGCAATAGCTAATCAAATGAAGCAAGGTTTGAATTATCTAGAAACAGAATTAAAACAGTAGTAGTAATGACTGGAGAGTGGAGATATGTAAACCGCTAGGATGATTTACCACGCTATGAGATTACACTTCCCGATTGAAGGATACTTAAAAAAAATTGGAGCGCCATGGGCGGTCTATCTTGGGCCGTCCCAGCAAAATAATTGGAGCGTCATATTTATTTTTTTTCTTAATTCTTAGTAAAACTATAAAAAGAAGGAAGCAATTCATCATGGTTTATGTTTAAATGTGAGGAGTTAATTTTGTTCAGGGACCTTTCATATGGCCTGACATTTTTCTTCTTTCTTCTACTCCTAGCTGGAGGATCTTCTAGCAGGTGGTACATAGGCATATGGTACAACAAAATCCCAGTGCAAACTGTAGTCTGGGTAGCTAACAGAGATAAACCGATCACTGATCCAACCTCATCAAATCTTACCATCTTAAATGATGGAAATATTGTTCTCCTAGTGAATCATTCTGAATCTCCTGTATGGTCTACCAATATTGTAAACAATACAATCGCCAGTTCCCCAGTTGCTGTGCTCCTTGACAGCGGGAACCTAGTAGTCAGACATGAGTCCAACACATCTGAGGTGTTATGGCAGAGTTTCGACGATTTTACAGACACATGGCTGCCAGGTAATAAGCTCAGTCGGAACAAGAAAACCGGAGTTATCAAACGGATGATCTCTTGGAAAGACCGTGCTGATCCAGCACCAGGAATGTTTTCCATTCAGTTGGATCCTAGTGGTGCCACTCAATATATTCTCCTGTGGAATAGCTCGTCAGTTTACTGGGCTTCAGGCAACTGGACTGGCAACACATACACTGGTGTGCCAGAGTTGTCACCTACCAATAGCGATCCCAATTCAGCATACACGTTCCAGTTTGTTGACAATGACCAGGAGACGTACTTCAACTACACTGTTAAGAATGATGCACAATTAACAAGGGGCGTCATTGATGTGTCAGGTCATTTTCAAGCTTGGGTATGGGCAGATGCAGCGCAAGCATGGCAACTTTTTTTTGCACAACCAAAAGCTAAGTGCAGTGTTTATGGGATGTGCGGCACATATAGTAAATGTAGCGAAAATGCTGAATTATCATGCAGTTGTCTCAAGGGCTTCAGTGAAAGTTATCCAAACAGTTGGAGACTAGGTGATCAGACAGCAGGCTGCAGGAGAAACCTCCCATTGCAGTGTGGTAACAATGGCTCAGTGAAGGCAAAGCAAGATAGATTCTTTATGATTAGCAGCGTCAAGTTGCCAGATATGGCACACACCAGAGATGTAACCAATGTTCACAACTGTGAATTAACCTGCCTGAAGAATTGTTCTTGCTCTGCTTACTCTTATAACGGTACTTGCTTGGTTTGGTACAACGGTTTGATAAATTTGCAAGATAACATGGGTGAATTGAGTAATAGCATCTTTATTAGATTGTCTGCCTCAGAATTACCCCAGTCAGGAAAAATGAAATGGTGGATTGTTGGGATTATCATTGGTGGACTTGTTCTCAGTTCTGGGGTGAGTATATTATATTTCCTAGGTAGGCGAAGAACAATTGGAATAAACCGAGATGATGGGAAATTGATCACTTTCAAATACAATGAACTACAGTTTCTAACAAGAAACTTTTCTGAGAGATTGGGTGTAGGTTCTTTTGGCTCTGTGTACAAAGGGATTCTACCAGATGCAACAACATTGGCAGTTAAGAAACTAGAGGGGCTTCGTCAGGGGGAGAAGCAATTCAGGGCGGAAGTGAGCACCATTGGGAATATTCAGCACATAAACTTGATTCGACTTCTAGGATTTTGTTCCGAAGGGGCGAAGAGATTACTTGTCTACGAGTATATGCCCAACGGTTCGCTTGATCATCACTTGTTTCAGAACAATTCTGCGATTTCGAGTTGGAAAAGAAGATATCAAATAGCTATAGGAATTGCCAAGGGATTGGCTTATCTGCATGATGGGTGCCGAGATTGCATCATACATTGTGATATTAAACCACAGAATATACTACTGGACATGTCATTTACCCCAAAAGTGGCAGATTTTGGGATGGCAAAGCTCTTAGGCCGGGATTTCAGTAGGGTTTTGACTTCAATTAGGGGCACAATAGGATATCTTGCACCGGAGTGGATAAGTGGTGAGTCCATAACAACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTATTTGAGATCATTTCCAGAAAGAGAAATCTAACACAAACAGAGACAAGAACAGAAATATTCTTTCCTGTGCTAGTTGCAAGGAAGCTTGTACAAGGAGAAGTGCTTACACTGTTGGATTCTGAATTGGTGGATGATGTGAACTTAGAGGAGCTTGAAAGGGCGTGCAAGGTTGCTTGCTGGTGCATTCAAGACGACGAGAGCTCCAGGCCAACAATGGCAGAAGTTCTTCAAATGCTAGAAGGATTGGTAGATATCGAAGTGCCACCTGCCCCAAGATACCTCCAGGTTCTTGCTGAAGGTGCAGCGAGTAAAACTTAA
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| CDS seq | ATGGCGCCACGTCTTTCTGCCTGCCTTGTGTTCTTACTCATATTGGTTCTTTCACTCCAAGAGTCTCCCTTGCATGCTGCTGATACTCTCACTGCGGAACAGCCGCTCTCTGCTGATCAGAAATTGATCTCTCAGGATGGCAAGTTCGCTCTGGGGTTCTTCCAGCCTGCAGGATCTTCTAGCAGGTGGTACATAGGCATATGGTACAACAAAATCCCAGTGCAAACTGTAGTCTGGGTAGCTAACAGAGATAAACCGATCACTGATCCAACCTCATCAAATCTTACCATCTTAAATGATGGAAATATTGTTCTCCTAGTGAATCATTCTGAATCTCCTGTATGGTCTACCAATATTGTAAACAATACAATCGCCAGTTCCCCAGTTGCTGTGCTCCTTGACAGCGGGAACCTAGTAGTCAGACATGAGTCCAACACATCTGAGGTGTTATGGCAGAGTTTCGACGATTTTACAGACACATGGCTGCCAGGTAATAAGCTCAGTCGGAACAAGAAAACCGGAGTTATCAAACGGATGATCTCTTGGAAAGACCGTGCTGATCCAGCACCAGGAATGTTTTCCATTCAGTTGGATCCTAGTGGTGCCACTCAATATATTCTCCTGTGGAATAGCTCGTCAGTTTACTGGGCTTCAGGCAACTGGACTGGCAACACATACACTGGTGTGCCAGAGTTGTCACCTACCAATAGCGATCCCAATTCAGCATACACGTTCCAGTTTGTTGACAATGACCAGGAGACGTACTTCAACTACACTGTTAAGAATGATGCACAATTAACAAGGGGCGTCATTGATGTGTCAGGTCATTTTCAAGCTTGGGTATGGGCAGATGCAGCGCAAGCATGGCAACTTTTTTTTGCACAACCAAAAGCTAAGTGCAGTGTTTATGGGATGTGCGGCACATATAGTAAATGTAGCGAAAATGCTGAATTATCATGCAGTTGTCTCAAGGGCTTCAGTGAAAGTTATCCAAACAGTTGGAGACTAGGTGATCAGACAGCAGGCTGCAGGAGAAACCTCCCATTGCAGTGTGGTAACAATGGCTCAGTGAAGGCAAAGCAAGATAGATTCTTTATGATTAGCAGCGTCAAGTTGCCAGATATGGCACACACCAGAGATGTAACCAATGTTCACAACTGTGAATTAACCTGCCTGAAGAATTGTTCTTGCTCTGCTTACTCTTATAACGGTACTTGCTTGGTTTGGTACAACGGTTTGATAAATTTGCAAGATAACATGGGTGAATTGAGTAATAGCATCTTTATTAGATTGTCTGCCTCAGAATTACCCCAGTCAGGAAAAATGAAATGGTGGATTGTTGGGATTATCATTGGTGGACTTGTTCTCAGTTCTGGGGTGAGTATATTATATTTCCTAGGTAGGCGAAGAACAATTGGAATAAACCGAGATGATGGGAAATTGATCACTTTCAAATACAATGAACTACAGTTTCTAACAAGAAACTTTTCTGAGAGATTGGGTGTAGGTTCTTTTGGCTCTGTGTACAAAGGGATTCTACCAGATGCAACAACATTGGCAGTTAAGAAACTAGAGGGGCTTCGTCAGGGGGAGAAGCAATTCAGGGCGGAAGTGAGCACCATTGGGAATATTCAGCACATAAACTTGATTCGACTTCTAGGATTTTGTTCCGAAGGGGCGAAGAGATTACTTGTCTACGAGTATATGCCCAACGGTTCGCTTGATCATCACTTGTTTCAGAACAATTCTGCGATTTCGAGTTGGAAAAGAAGATATCAAATAGCTATAGGAATTGCCAAGGGATTGGCTTATCTGCATGATGGGTGCCGAGATTGCATCATACATTGTGATATTAAACCACAGAATATACTACTGGACATGTCATTTACCCCAAAAGTGGCAGATTTTGGGATGGCAAAGCTCTTAGGCCGGGATTTCAGTAGGGTTTTGACTTCAATTAGGGGCACAATAGGATATCTTGCACCGGAGTGGATAAGTGGTGAGTCCATAACAACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTATTTGAGATCATTTCCAGAAAGAGAAATCTAACACAAACAGAGACAAGAACAGAAATATTCTTTCCTGTGCTAGTTGCAAGGAAGCTTGTACAAGGAGAAGTGCTTACACTGTTGGATTCTGAATTGGTGGATGATGTGAACTTAGAGGAGCTTGAAAGGGCGTGCAAGGTTGCTTGCTGGTGCATTCAAGACGACGAGAGCTCCAGGCCAACAATGGCAGAAGTTCTTCAAATGCTAGAAGGATTGGTAGATATCGAAGTGCCACCTGCCCCAAGATACCTCCAGGTTCTTGCTGAAGGTGCAGCGAGTAAAACTTAA
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| Protein seq | MAPRLSACLVFLLILVLSLQESPLHAADTLTAEQPLSADQKLISQDGKFALGFFQPAGSSSRWYIGIWYNKIPVQTVVWVANRDKPITDPTSSNLTILNDGNIVLLVNHSESPVWSTNIVNNTIASSPVAVLLDSGNLVVRHESNTSEVLWQSFDDFTDTWLPGNKLSRNKKTGVIKRMISWKDRADPAPGMFSIQLDPSGATQYILLWNSSSVYWASGNWTGNTYTGVPELSPTNSDPNSAYTFQFVDNDQETYFNYTVKNDAQLTRGVIDVSGHFQAWVWADAAQAWQLFFAQPKAKCSVYGMCGTYSKCSENAELSCSCLKGFSESYPNSWRLGDQTAGCRRNLPLQCGNNGSVKAKQDRFFMISSVKLPDMAHTRDVTNVHNCELTCLKNCSCSAYSYNGTCLVWYNGLINLQDNMGELSNSIFIRLSASELPQSGKMKWWIVGIIIGGLVLSSGVSILYFLGRRRTIGINRDDGKLITFKYNELQFLTRNFSERLGVGSFGSVYKGILPDATTLAVKKLEGLRQGEKQFRAEVSTIGNIQHINLIRLLGFCSEGAKRLLVYEYMPNGSLDHHLFQNNSAISSWKRRYQIAIGIAKGLAYLHDGCRDCIIHCDIKPQNILLDMSFTPKVADFGMAKLLGRDFSRVLTSIRGTIGYLAPEWISGESITTKADVFSYGMMLFEIISRKRNLTQTETRTEIFFPVLVARKLVQGEVLTLLDSELVDDVNLEELERACKVACWCIQDDESSRPTMAEVLQMLEGLVDIEVPPAPRYLQVLAEGAASKT |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0890200 | Os01t0890200-00 | Chr01 | 38704701 | 38707473 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCCACGTCTTTCTGCCTGCCTTGTGTTCTTACTCATATTGGTTCTTTCACTCCAAGAGTCTCCCTTGCATGCTGCTGATACTCTCACTGCGGAACAGCCGCTCTCTGCTGATCAGAAATTGATCTCTCAGGATGGCAAGTTCGCTCTGGGGTTCTTCCAGCCTGCAGGATCTTCTAGCAGGTGGTACATAGGCATATGGTACAACAAAATCCCAGTGCAAACTGTAGTCTGGGTAGCTAACAGAGATAAACCGATCACTGATCCAACCTCATCAAATCTTACCATCTTAAATGATGGAAATATTGTTCTCCTAGTGAATCATTCTGAATCTCCTGTATGGTCTACCAATATTGTAAACAATACAATCGCCAGTTCCCCAGTTGCTGTGCTCCTTGACAGCGGGAACCTAGTAGTCAGACATGAGTCCAACACATCTGAGGTGTTATGGCAGAGTTTCGACGATTTTACAGACACATGGCTGCCAGGTAATAAGCTCAGTCGGAACAAGAAAACCGGAGTTATCAAACGGATGATCTCTTGGAAAGACCGTGCTGATCCAGCACCAGGAATGTTTTCCATTCAGTTGGATCCTAGTGGTGCCACTCAATATATTCTCCTGTGGAATAGCTCGTCAGTTTACTGGGCTTCAGGCAACTGGACTGGCAACACATACACTGGTGTGCCAGAGTTGTCACCTACCAATAGCGATCCCAATTCAGCATACACGTTCCAGTTTGTTGACAATGACCAGGAGACGTACTTCAACTACACTGTTAAGAATGATGCACAATTAACAAGGGGCGTCATTGATGTGTCAGGTCATTTTCAAGCTTGGGTATGGGCAGATGCAGCGCAAGCATGGCAACTTTTTTTTGCACAACCAAAAGCTAAGTGCAGTGTTTATGGGATGTGCGGCACATATAGTAAATGTAGCGAAAATGCTGAATTATCATGCAGTTGTCTCAAGGGCTTCAGTGAAAGTTATCCAAACAGTTGGAGACTAGGTGATCAGACAGCAGGCTGCAGGAGAAACCTCCCATTGCAGTGTGGTAACAATGGCTCAGTGAAGGCAAAGCAAGATAGATTCTTTATGATTAGCAGCGTCAAGTTGCCAGATATGGCACACACCAGAGATGTAACCAATGTTCACAACTGTGAATTAACCTGCCTGAAGAATTGTTCTTGCTCTGCTTACTCTTATAACGGTACTTGCTTGGTTTGGTACAACGGTTTGATAAATTTGCAAGATAACATGGGTGAATTGAGTAATAGCATCTTTATTAGATTGTCTGCCTCAGAATTACCCCAGTCAGGAAAAATGAAATGGTGGATTGTTGGGATTATCATTGGTGGACTTGTTCTCAGTTCTGGGGTGAGTATATTATATTTCCTAGGTAGGCGAAGAACAATTGGAATAAACCGAGATGATGGGAAATTGATCACTTTCAAATACAATGAACTACAGTTTCTAACAAGAAACTTTTCTGAGAGATTGGGTGTAGGTTCTTTTGGCTCTGTGTACAAAGGGATTCTACCAGATGCAACAACATTGGCAGTTAAGAAACTAGAGGGGCTTCGTCAGGGGGAGAAGCAATTCAGGGCGGAAGTGAGCACCATTGGGAATATTCAGCACATAAACTTGATTCGACTTCTAGGATTTTGTTCCGAAGGGGCGAAGAGATTACTTGTCTACGAGTATATGCCCAACGGTTCGCTTGATCATCACTTGTTTCAGAACAATTCTGCGATTTCGAGTTGGAAAAGAAGATATCAAATAGCTATAGGAATTGCCAAGGGATTGGCTTATCTGCATGATGGGTGCCGAGATTGCATCATACATTGTGATATTAAACCACAGAATATACTACTGGACATGTCATTTACCCCAAAAGTGGCAGATTTTGGGATGGCAAAGCTCTTAGGCCGGGATTTCAGTAGGGTTTTGACTTCAATTAGGGGCACAATAGGATATCTTGCACCGGAGTGGATAAGTGGTGAGTCCATAACAACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTATTTGAGATCATTTCCAGAAAGAGAAATCTAACACAAACAGAGACAAGAACAGAAATATTCTTTCCTGTGCTAGTTGCAAGGAAGCTTGTACAAGGAGAAGTGCTTACACTGTTGGATTCTGAATTGGTGGATGATGTGAACTTAGAGGAGCTTGAAAGGGCGTGCAAGGTTGCTTGCTGGTGCATTCAAGACGACGAGAGCTCCAGGCCAACAATGGCAGAAGTTCTTCAAATGCTAGAAGGATTGGTAGATATCGAAGTGCCACCTGCCCCAAGATACCTCCAGGTTCTTGCTGAAGGTGCAGCGAGTAAAACTTAA
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| Protein seq | MAPRLSACLVFLLILVLSLQESPLHAADTLTAEQPLSADQKLISQDGKFALGFFQPAGSSSRWYIGIWYNKIPVQTVVWVANRDKPITDPTSSNLTILNDGNIVLLVNHSESPVWSTNIVNNTIASSPVAVLLDSGNLVVRHESNTSEVLWQSFDDFTDTWLPGNKLSRNKKTGVIKRMISWKDRADPAPGMFSIQLDPSGATQYILLWNSSSVYWASGNWTGNTYTGVPELSPTNSDPNSAYTFQFVDNDQETYFNYTVKNDAQLTRGVIDVSGHFQAWVWADAAQAWQLFFAQPKAKCSVYGMCGTYSKCSENAELSCSCLKGFSESYPNSWRLGDQTAGCRRNLPLQCGNNGSVKAKQDRFFMISSVKLPDMAHTRDVTNVHNCELTCLKNCSCSAYSYNGTCLVWYNGLINLQDNMGELSNSIFIRLSASELPQSGKMKWWIVGIIIGGLVLSSGVSILYFLGRRRTIGINRDDGKLITFKYNELQFLTRNFSERLGVGSFGSVYKGILPDATTLAVKKLEGLRQGEKQFRAEVSTIGNIQHINLIRLLGFCSEGAKRLLVYEYMPNGSLDHHLFQNNSAISSWKRRYQIAIGIAKGLAYLHDGCRDCIIHCDIKPQNILLDMSFTPKVADFGMAKLLGRDFSRVLTSIRGTIGYLAPEWISGESITTKADVFSYGMMLFEIISRKRNLTQTETRTEIFFPVLVARKLVQGEVLTLLDSELVDDVNLEELERACKVACWCIQDDESSRPTMAEVLQMLEGLVDIEVPPAPRYLQVLAEGAASKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0890200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66640 | RBH | 0.278072 | 0.136287 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0890600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043130 | SBH | 0.000000 | 0.0 | 0.199038 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042720 | SBH | 0.033638 | 0.0 | 0.083540 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043070 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042520 | SBH | 0.037285 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042130 | SBH | 0.274112 | 0.0 | 0.294128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0637300 | SBH | 0.151758 | 0.1542245 | 0.238867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041760 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0638000 | RBH | 0.05796 | 0.0172315 | 0.7802745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042110 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042050 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042330 | SBH | 0.000000 | 1.653371 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042250 | SBH | 0.025500 | 0.0 | 0.046369 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042120 | SBH | 0.030608 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042520 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042220 | RBH | 0.000000 | 0.000000 | 0.000000 |
