Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0890100 | OGI:01114730 | 6/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:38700691-38701615 | ||||||||
| Gene Symbol | RLCK49, OsRLCK49, OsADK1, RLCK51, OsRLCK51, OsPSRK2, PSRK2, RLCK56, OsRLCK56 | ||||||||||
| DNA seq | AACTTCACCGAGAAGTTAGGAGCAGGGTCTTTTGGTTCCGTGTTCAAAGATAATTCCAGACACAGCTACAGTAGCAGTTAAGAGGTTAGAAGGCCTGTGTCAAGGGGAGAAAGAATTCAGAGCAGAGGTGAGCACCATTGGAAAGATTCATCACAAAAACCTGATTCGACTACTTGGGTTTTGTTGTGGAGGATCAAAGAAGTTGCTTGTCTATGAGTACATGCCCAATGGCTCACTCGACCAGCACTTGTTTGGAAAGAGTAATCTGACTCTTAGTTGGAGCACAAGGTATCAGATCACCGTAGGAATTGCCAAGGGGTTAGCTTATCTACATGAGGGGTGCAGGGATTGTATCATACACTGTGATATCAAGCCACAAAACATACTAATTAATGAATCGCTTGCACCAAAGGTAGCAGATTTCGGGCTGTCCAAGCTGATAGGTCATGATTTCAGCAGAGTCCTGACGTCGATGAGAGGAACACTAGGGTACCTTGCACCCGAATGGTTAAGCGGCCAGGCTATCACTTCAAAGGCAGATGTTTTCAGCTATGGCATGATGCTTTTTGAGATCATTTCAGGGAAGAGGAACATAGAGCACGGAGCTAGCACAAGTAGTTCAATGTTGATTGCAGAGGAGATTCCAAAAGGAGGAGAGGTGCACAGATTGTTCGACCCTGAGCTGGTTGGTGATGCAAACCCAGAGGAGCTCGCCAGGGTGTTCAAGGTTGCCTGCTGGTGCATTCAGAATCACCCTGACTGTAGGCCATCGATGCGAGAGATCATTCAGATTCTGGAAGGGCTAAAGCCTTTCGAAACACCACCTGTTCCAAGGTATCTCAAACTTCTTGCTGATGGTCAAGAGTAAATGCTGACTACTGCCAAATACTGTAATGCTTGTGATGTATTAGCACTTCGTTTCAGA
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| CDS seq | GAGCAGGGTCTTTTGGTTCCGTGTTCAAAGATAATTCCAGACACAGCTACAGTAGCAGTTAAGAGGTTAGAAGGCCTGTGTCAAGGGGAGAAAGAATTCAGAGCAGAGGTGAGCACCATTGGAAAGATTCATCACAAAAACCTGATTCGACTACTTGGGTTTTGTTGTGGAGGATCAAAGAAGTTGCTTGTCTATGAGTACATGCCCAATGGCTCACTCGACCAGCACTTGTTTGGAAAGAGTAATCTGACTCTTAGTTGGAGCACAAGGTATCAGATCACCGTAGGAATTGCCAAGGGGTTAGCTTATCTACATGAGGGGTGCAGGGATTGTATCATACACTGTGATATCAAGCCACAAAACATACTAATTAATGAATCGCTTGCACCAAAGGTAGCAGATTTCGGGCTGTCCAAGCTGATAGGTCATGATTTCAGCAGAGTCCTGACGTCGATGAGAGGAACACTAGGGTACCTTGCACCCGAATGGTTAAGCGGCCAGGCTATCACTTCAAAGGCAGATGTTTTCAGCTATGGCATGATGCTTTTTGAGATCATTTCAGGGAAGAGGAACATAGAGCACGGAGCTAGCACAAGTAGTTCAATGTTGATTGCAGAGGAGATTCCAAAAGGAGGAGAGGTGCACAGATTGTTCGACCCTGAGCTGGTTGGTGATGCAAACCCAGAGGAGCTCGCCAGGGTGTTCAAGGTTGCCTGCTGGTGCATTCAGAATCACCCTGACTGTAGGCCATCGATGCGAGAGATCATTCAGATTCTGGAAGGGCTAAAGCCTTTCGAAACACCACCTGTTCCAAGGTATCTCAAACTTCTTGCTGATGGTCAAGAGTAA
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| Protein seq | EQGLLVPCSKIIPDTATVAVKRLEGLCQGEKEFRAEVSTIGKIHHKNLIRLLGFCCGGSKKLLVYEYMPNGSLDQHLFGKSNLTLSWSTRYQITVGIAKGLAYLHEGCRDCIIHCDIKPQNILINESLAPKVADFGLSKLIGHDFSRVLTSMRGTLGYLAPEWLSGQAITSKADVFSYGMMLFEIISGKRNIEHGASTSSSMLIAEEIPKGGEVHRLFDPELVGDANPEELARVFKVACWCIQNHPDCRPSMREIIQILEGLKPFETPPVPRYLKLLADGQE |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0890100 | Os01t0890100-00 | Chr01 | 38700691 | 38701615 | + | irgsp1_rep | ||
| CDS seq | GAGCAGGGTCTTTTGGTTCCGTGTTCAAAGATAATTCCAGACACAGCTACAGTAGCAGTTAAGAGGTTAGAAGGCCTGTGTCAAGGGGAGAAAGAATTCAGAGCAGAGGTGAGCACCATTGGAAAGATTCATCACAAAAACCTGATTCGACTACTTGGGTTTTGTTGTGGAGGATCAAAGAAGTTGCTTGTCTATGAGTACATGCCCAATGGCTCACTCGACCAGCACTTGTTTGGAAAGAGTAATCTGACTCTTAGTTGGAGCACAAGGTATCAGATCACCGTAGGAATTGCCAAGGGGTTAGCTTATCTACATGAGGGGTGCAGGGATTGTATCATACACTGTGATATCAAGCCACAAAACATACTAATTAATGAATCGCTTGCACCAAAGGTAGCAGATTTCGGGCTGTCCAAGCTGATAGGTCATGATTTCAGCAGAGTCCTGACGTCGATGAGAGGAACACTAGGGTACCTTGCACCCGAATGGTTAAGCGGCCAGGCTATCACTTCAAAGGCAGATGTTTTCAGCTATGGCATGATGCTTTTTGAGATCATTTCAGGGAAGAGGAACATAGAGCACGGAGCTAGCACAAGTAGTTCAATGTTGATTGCAGAGGAGATTCCAAAAGGAGGAGAGGTGCACAGATTGTTCGACCCTGAGCTGGTTGGTGATGCAAACCCAGAGGAGCTCGCCAGGGTGTTCAAGGTTGCCTGCTGGTGCATTCAGAATCACCCTGACTGTAGGCCATCGATGCGAGAGATCATTCAGATTCTGGAAGGGCTAAAGCCTTTCGAAACACCACCTGTTCCAAGGTATCTCAAACTTCTTGCTGATGGTCAAGAGTAA
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| Protein seq | EQGLLVPCSKIIPDTATVAVKRLEGLCQGEKEFRAEVSTIGKIHHKNLIRLLGFCCGGSKKLLVYEYMPNGSLDQHLFGKSNLTLSWSTRYQITVGIAKGLAYLHEGCRDCIIHCDIKPQNILINESLAPKVADFGLSKLIGHDFSRVLTSMRGTLGYLAPEWLSGQAITSKADVFSYGMMLFEIISGKRNIEHGASTSSSMLIAEEIPKGGEVHRLFDPELVGDANPEELARVFKVACWCIQNHPDCRPSMREIIQILEGLKPFETPPVPRYLKLLADGQE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0890100 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0890600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043130 | RBH | 0.000000 | 0.0 | 0.199038 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042720 | RBH | 0.033638 | 0.0 | 0.083540 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043070 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042520 | RBH | 0.037285 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042130 | RBH | 0.274112 | 0.0 | 0.294128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0637300 | RBH | 0.151758 | 0.1542245 | 0.238867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041760 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0637900 | RBH | 0.23437 | 0.1507995 | 1.306206 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042110 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042050 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042330 | RBH | 0.000000 | 1.653371 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042250 | RBH | 0.025500 | 0.0 | 0.046369 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042120 | RBH | 0.030608 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042520 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042220 | SBH | 0.000000 | 0.000000 | 0.000000 |
