Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0864700 | OGI:01111070 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:37417036-37417649 | ||||||||
| Gene Symbol | OsNek5 | ||||||||||
| DNA seq | ACATTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGCTTCATCATTCATCATCCCTTTAAAACTTTTGGCCAACCAGATTGCTGTTTCTCGAGGAGATACCTTATCCTTCCCGAAAGGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTGCAGTAGATCCGCAGAAAGCTCCAGGAGTCCTTCAAGGGCCTCGGCTCGCTGCCTGAAAGACTTGACATCTAGAATTTCCTTCGTTGGGCTTGCCTCCTCCTTGAATCCATTGTTGATAGCAGTAGTAGTAGAATTTACTTCAGGGACAGTAAGAAATTTTACAACATCTGAACAGGCTGTTTTCGAGCTGATGGTATTAGTTTCCGA
More
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| CDS seq | TCGGAAACTAATACCATCAGCTCGAAAACAGCCTGTTCAGATGTTGTAAAATTTCTTACTGTCCCTGAAGTAAATTCTACTACTACTGCTATCAACAATGGATTCAAGGAGGAGGCAAGCCCAACGAAGGAAATTCTAGATGTCAAGTCTTTCAGGCAGCGAGCCGAGGCCCTTGAAGGACTCCTGGAGCTTTCTGCGGATCTACTGCAACACAATAGGCTGGAGGAGCTTGCGGTTGTTCTAAAGCCTTTCGGGAAGGATAAGGTATCTCCTCGAGAAACAGCAATCTGGTTGGCCAAAAGTTTTAAAGGGATGATGAATGATGAAGCGAGTCGCAGTTCAATGTGA |
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| Protein seq | SETNTISSKTACSDVVKFLTVPEVNSTTTAINNGFKEEASPTKEILDVKSFRQRAEALEGLLELSADLLQHNRLEELAVVLKPFGKDKVSPRETAIWLAKSFKGMMNDEASRSSM |
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| Function | Serine/threonine-protein kinase Nek5 [UniProtKB/Swiss-Prot:Q94CU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0864700 | Os01t0864700-00 | Chr01 | 37417036 | 37417649 | - | irgsp1_rep | ||
| CDS seq | TCGGAAACTAATACCATCAGCTCGAAAACAGCCTGTTCAGATGTTGTAAAATTTCTTACTGTCCCTGAAGTAAATTCTACTACTACTGCTATCAACAATGGATTCAAGGAGGAGGCAAGCCCAACGAAGGAAATTCTAGATGTCAAGTCTTTCAGGCAGCGAGCCGAGGCCCTTGAAGGACTCCTGGAGCTTTCTGCGGATCTACTGCAACACAATAGGCTGGAGGAGCTTGCGGTTGTTCTAAAGCCTTTCGGGAAGGATAAGGTATCTCCTCGAGAAACAGCAATCTGGTTGGCCAAAAGTTTTAAAGGGATGATGAATGATGAAGCGAGTCGCAGTTCAATGTGA
More
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| Protein seq | SETNTISSKTACSDVVKFLTVPEVNSTTTAINNGFKEEASPTKEILDVKSFRQRAEALEGLLELSADLLQHNRLEELAVVLKPFGKDKVSPRETAIWLAKSFKGMMNDEASRSSM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0864700 | RBH | 0.603025 | 0.659158 | 5.589448 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64490 | RBH | 0.062955 | 0.379660 | 0.994442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0440800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041370 | RBH | 0.207883 | 72.586838 | 12.009042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040900 | RBH | 0.035468 | 24.984690 | 1.200551 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041280 | RBH | 0.0 | 69.670540 | 13.453139 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040750 | RBH | 0.044290 | 1.775392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040300 | RBH | 0.295717 | 57.559669 | 20.577663 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0615900 | RBH | 10.264758 | 32.7517105 | 3.7653665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039980 | RBH | 0.054604 | 4.382215 | 1.371701 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0615100 | RBH | 11.1741135 | 10.367537 | 11.2640985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040320 | RBH | 0.309404 | 1.494403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040290 | RBH | 0.185207 | 54.834122 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040530 | RBH | 2.537380 | 94.754189 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040480 | RBH | 0.129671 | 3.903471 | 1.344202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040350 | RBH | 0.132627 | 35.069912 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040800 | RBH | 0.088628 | 9.685285 | 5.803796 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040470 | RBH | 0.128918 | 30.871717 | 6.519480 |
