Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0853700 | OGI:01109370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:36763677-36765294 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTTGTTACAAGCATTGAATAGCATATGCTCCCAGTACTACCAAACAGGGGCACTAGTACACTACAACTGCCTTACAACAACATCAGCACATCAGAAAACCGTTATAGCTATAATCTGACCTGGTGTTCCTGATCAAAACAGTAACCGGTTAGTGGCTGGAAAACAACACACAGGCTTCATCAAATGCTTATTTCAGTACTCTGGCCCTATACTTTTCTATGTACACTGGAGTTGCGCGCCGATGGCGTCTCGTGGCTCTCCATGGACACGGCTGCAGGGAGATGGTGGCAGTACGCTGAACGCTGTGCCACTCTCTGATGATGGACTGATGCCCTTACCCCTTCCGTCCAGTACTTTGCGATCCTGAGACGCATGAAGCAACTCTGCAACCAACTGGCTAGCCAATCACACACTGACACGGGACTGCGACTTGGCCGGAGCCTCGTCGTTCCCGTAGATATGATCGGAGGCGGTGCTCTGTGTTCCTCCTTGTGCGGTTCTCCGCCGCTGAGAACCGCCGTCACAAGTGTCCGCATTGCATCTGCAGGAGGATGGCGTCGTCGAGGCCAGGCCCCGTACCGCCGCCGGCCAAGAACGAGGCATTGGGCTCTAGCTTCACGTTGCCGTAGGGGTGGTGGCTGACGCCGAGCGCTCCCGGCAGCGGCGACATGAAGTGCCGTTGCGCGCCGAGTGACGGTGGCGGGGGAACGGGTTTCGTGTCCACGAGGGAGCCGAGCTGGTCTGAGGCGGTGGTGAGCACGGACGGCGGCGATGGGGAGGGGTTGCTGGTGTCTTCTTCTGGCAGGTTGACCGTGGTGATGTCGTGGATGCTAGACCGGCGCTTGTCCTTGCCGCCGGAGTTGAGGCGGATGAAGTACTTCTGCGCGTGGCTGGCCACCTGCGTCGGCGTCCGGCTCGTCACGAAGTAGCGCGAGATGTTCCTCCAGTCTCCCCTCCCGTACTTCTTCAGCCCCATCAAGAACGACCTACACCCACAGCAACGCGATCAGAACTCAGCCAATTGAAGCGACAACATAGTCGGTCTCAGATCCACCGAATTTTAGCAGCAACAGCTACGGCTCTGATCGAATCGGGTGCTTACTTGTGCTCCTCCTCCGTCCACGGGACGCCTTTCTTCCTCTCCTGGTCCGGGGCGCGGCCGCGTTTGAGGTAGCAGCCGCGCCTGAACCCGCCGTCGCTGCCGTCCCAGTCCTGCAGGGTGAACCCGGAGGACGCCGGGGACAAGCTGCTGCTGTAGTGAGGGAACGGCACCAGCCCTGCCTCGATGGAGCCGACGTCGTTCTCGAGGTCCCTGTAGTGGTTCATCACGTCTATGACCGTCTTCCTGGGCAGCATCGCGGCGACCATCTCCCACCTGTTCGGCGAGTCCAGGTCGACCTGTGCGAGGGCCCTCTCGAACACCTTGTTCTCCTCTGCCGACCACGCCTCCGCACCTCGCCGCTCCTGCAAGTACCAGCACGGCTGCCCGGGGAAGTAGGGCAGCGGTAGCACCTCCCGAAGCGCCTCTGCCATCATCTTGCCCTCGCTCGCGCTGCTTGTGACCTAGGGCGGCGACGAGCCGAGACGAAGACGAGACACAGGGAGAGACGGGGAGT
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| CDS seq | ATGATGGCAGAGGCGCTTCGGGAGGTGCTACCGCTGCCCTACTTCCCCGGGCAGCCGTGCTGGTACTTGCAGGAGCGGCGAGGTGCGGAGGCGTGGTCGGCAGAGGAGAACAAGGTGTTCGAGAGGGCCCTCGCACAGGTCGACCTGGACTCGCCGAACAGGTGGGAGATGGTCGCCGCGATGCTGCCCAGGAAGACGGTCATAGACGTGATGAACCACTACAGGGACCTCGAGAACGACGTCGGCTCCATCGAGGCAGGGCTGGTGCCGTTCCCTCACTACAGCAGCAGCTTGTCCCCGGCGTCCTCCGGGTTCACCCTGCAGGACTGGGACGGCAGCGACGGCGGGTTCAGGCGCGGCTGCTACCTCAAACGCGGCCGCGCCCCGGACCAGGAGAGGAAGAAAGGCGTCCCGTGGACGGAGGAGGAGCACAAGTCGTTCTTGATGGGGCTGAAGAAGTACGGGAGGGGAGACTGGAGGAACATCTCGCGCTACTTCGTGACGAGCCGGACGCCGACGCAGGTGGCCAGCCACGCGCAGAAGTACTTCATCCGCCTCAACTCCGGCGGCAAGGACAAGCGCCGGTCTAGCATCCACGACATCACCACGGTCAACCTGCCAGAAGAAGACACCAGCAACCCCTCCCCATCGCCGCCGTCCGTGCTCACCACCGCCTCAGACCAGCTCGGCTCCCTCGTGGACACGAAACCCGTTCCCCCGCCACCGTCACTCGGCGCGCAACGGCACTTCATGTCGCCGCTGCCGGGAGCGCTCGGCGTCAGCCACCACCCCTACGGCAACGTGAAGCTAGAGCCCAATGCCTCGTTCTTGGCCGGCGGCGGTACGGGGCCTGGCCTCGACGACGCCATCCTCCTGCAGATGCAATGCGGACACTTGTGA
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| Protein seq | MMAEALREVLPLPYFPGQPCWYLQERRGAEAWSAEENKVFERALAQVDLDSPNRWEMVAAMLPRKTVIDVMNHYRDLENDVGSIEAGLVPFPHYSSSLSPASSGFTLQDWDGSDGGFRRGCYLKRGRAPDQERKKGVPWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPEEDTSNPSPSPPSVLTTASDQLGSLVDTKPVPPPPSLGAQRHFMSPLPGALGVSHHPYGNVKLEPNASFLAGGGTGPGLDDAILLQMQCGHL |
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| Function | Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0853700 | Os01t0853700-01 | Chr01 | 36763677 | 36765294 | - | irgsp1_rep | ||
| CDS seq | ATGATGGCAGAGGCGCTTCGGGAGGTGCTACCGCTGCCCTACTTCCCCGGGCAGCCGTGCTGGTACTTGCAGGAGCGGCGAGGTGCGGAGGCGTGGTCGGCAGAGGAGAACAAGGTGTTCGAGAGGGCCCTCGCACAGGTCGACCTGGACTCGCCGAACAGGTGGGAGATGGTCGCCGCGATGCTGCCCAGGAAGACGGTCATAGACGTGATGAACCACTACAGGGACCTCGAGAACGACGTCGGCTCCATCGAGGCAGGGCTGGTGCCGTTCCCTCACTACAGCAGCAGCTTGTCCCCGGCGTCCTCCGGGTTCACCCTGCAGGACTGGGACGGCAGCGACGGCGGGTTCAGGCGCGGCTGCTACCTCAAACGCGGCCGCGCCCCGGACCAGGAGAGGAAGAAAGGCGTCCCGTGGACGGAGGAGGAGCACAAGTCGTTCTTGATGGGGCTGAAGAAGTACGGGAGGGGAGACTGGAGGAACATCTCGCGCTACTTCGTGACGAGCCGGACGCCGACGCAGGTGGCCAGCCACGCGCAGAAGTACTTCATCCGCCTCAACTCCGGCGGCAAGGACAAGCGCCGGTCTAGCATCCACGACATCACCACGGTCAACCTGCCAGAAGAAGACACCAGCAACCCCTCCCCATCGCCGCCGTCCGTGCTCACCACCGCCTCAGACCAGCTCGGCTCCCTCGTGGACACGAAACCCGTTCCCCCGCCACCGTCACTCGGCGCGCAACGGCACTTCATGTCGCCGCTGCCGGGAGCGCTCGGCGTCAGCCACCACCCCTACGGCAACGTGAAGCTAGAGCCCAATGCCTCGTTCTTGGCCGGCGGCGGTACGGGGCCTGGCCTCGACGACGCCATCCTCCTGCAGATGCAATGCGGACACTTGTGA
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| Protein seq | MMAEALREVLPLPYFPGQPCWYLQERRGAEAWSAEENKVFERALAQVDLDSPNRWEMVAAMLPRKTVIDVMNHYRDLENDVGSIEAGLVPFPHYSSSLSPASSGFTLQDWDGSDGGFRRGCYLKRGRAPDQERKKGVPWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPEEDTSNPSPSPPSVLTTASDQLGSLVDTKPVPPPPSLGAQRHFMSPLPGALGVSHHPYGNVKLEPNASFLAGGGTGPGLDDAILLQMQCGHL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0853700 | RBH | 0.893463 | 0.223968 | 1.060674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63460 | RBH | 0.458679 | 0.252598 | 0.205051 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0449900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040630 | RBH | 0.0 | 1.312067 | 1.863600 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040110 | RBH | 0.246350 | 3.185242 | 0.797075 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040510 | RBH | 0.0 | 3.340502 | 2.991410 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039980 | RBH | 0.000000 | 0.169440 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039560 | RBH | 0.0 | 0.0 | 3.372551 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0606400 | RBH | 3.2406775 | 15.426197 | 12.084722 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039240 | RBH | 0.093439 | 0.697813 | 0.163348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0605100 | RBH | 4.7190485 | 7.0235185 | 21.3679065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039600 | RBH | 0.037201 | 0.121167 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039540 | RBH | 0.184305 | 3.022549 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039780 | RBH | 1.752071 | 17.602970 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039750 | RBH | 0.092209 | 0.697163 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039640 | RBH | 0.0 | 2.748106 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040090 | RBH | 0.000000 | 0.889872 | 0.886963 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039770 | RBH | 0.426788 | 6.446955 | 3.611470 |
