Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0850400 | OGI:01108970 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:36606535-36608135 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | GTCCATCTACCAAAAATACAACAATAACCATGATTTGACTTGATTACACCTTAATATATAAAAATTGACTCCAAAAGTTTCATCTCACTAATTTACATTATCCTAATCTGTTAAGCTGGTGGAACAGACCGCGCTAAGGTGTCACTGCTTTGCAAACCACTTTTCATCCAGGCAATGCTGCTAATTTCTGACACCAACGAAGCAAAACTACTATCTGAAATTGGTGGATGATCTTCAAACTCATTAAACTCGGGACCCAGCAATGAGTTCTTACGAAGTTGCCCATGAGAACTGCAGCAGCCATGCCCACATTTATTTGGCACCTCAGCAGCAAAACTTGTAGGATCAACAAACTTGCAGACCCCATTTTCAGGCTTGAAAGGATGAAGGTTTGAGTCAAACTTGGTGGCAAAGCTCAGCATTTCCTTTTGTGATGATTGAGCAGGTCCTACATTGTATGGTTTGAATGCACCAACCTTTGCAACTGGTCGGGCAAGATAAGGTGGATCAACAACTTCAGTTTTGCAACTCTGATCCCCGATTTGCCATGCCCCAACATAACTTTCAGATACTGTTTGTGCGGGAGCTTCCATTGCTTCCCTAACATTTAAGGAACTAAGATTGCCCAATGGCCAAGGTTCTTCTGAAACCGACCTAGGCCTCTCCGGAATAGCTCTCTTCATAACACCACCTTGTGTGCATCGGCCACCAGTGCAGTGCCGACGCCTCAGGGTAGAGTTCCAGTGATTCTTGATTGCATTATCGGTTCTCCCAACCAAAAGCTTTGCAATAGCCGCCCACTTGTTTCCATGGATTGCATGAGCAGCCATTATAATGCGGTCTTCCTCCTCTGCAGAAACAGCAATAATAATTTAACAAGCAAGTTTTACAGAGATGCAACGAAACTACACAACAGACTGAACGCGCAATGTTCATGCCCATAATGCTACAACCAAACTAGCATTGCCTCATAGACAAGACAAATACTCTTTGGATTAAGGTTAACATCACGTATCCTATAGGATACAGATACTACTGGATGAAAGGCAGATTGTACCAGTGAAGGGCTTGCGCTTGACTTGGGGGTCGAGTTGGTTACACCAGCGGAGGCGGCAGGACTTGCCGGAGCGCCCGGGTATCCCGCGCGCTATCAGCGTCCAGTTCCTCGGCCCGAGTTTCTCCACCAGATTGCTCAGCAGCGTGTCCTCATCCGAGGACCAGGGCCCCTTCACCCGCTCCTCCATCGCCGCCCCCGCGGCGTCACCCACTGCGATTTGGCCGGTGATGACGACGTCATCCTCGTCCTCCCCCGAAGGAGGCGGCGATGGGTGGCTAGGTTGGGGCAGGGACCGGACTGGGAGTGGGACGCGCGTCTCGCCGTCGACGGCCACGGGAGGGGAGGAGGACGACGATGAGGAGCGATGCGGTTGGGACTCGTCGGGATGGGCTCCTGCGCCGTGCGTCTCGTCGGTCATGGAGGCGGGGCTGGAATGGGTGGAGTCGGCGGCCGGTGGATTCGGCGGCGGCGGCGGCGGCGAAGCGGCGGTTTCGGACGACATGGTGGTGGCTGGTGCTGTGGGGTTGGTGCTAGTTCGTTCGTT
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| CDS seq | ATGTCGTCCGAAACCGCCGCTTCGCCGCCGCCGCCGCCGCCGAATCCACCGGCCGCCGACTCCACCCATTCCAGCCCCGCCTCCATGACCGACGAGACGCACGGCGCAGGAGCCCATCCCGACGAGTCCCAACCGCATCGCTCCTCATCGTCGTCCTCCTCCCCTCCCGTGGCCGTCGACGGCGAGACGCGCGTCCCACTCCCAGTCCGGTCCCTGCCCCAACCTAGCCACCCATCGCCGCCTCCTTCGGGGGAGGACGAGGATGACGTCGTCATCACCGGCCAAATCGCAGTGGGTGACGCCGCGGGGGCGGCGATGGAGGAGCGGGTGAAGGGGCCCTGGTCCTCGGATGAGGACACGCTGCTGAGCAATCTGGTGGAGAAACTCGGGCCGAGGAACTGGACGCTGATAGCGCGCGGGATACCCGGGCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAACCAACTCGACCCCCAAGTCAAGCGCAAGCCCTTCACTGAGGAGGAAGACCGCATTATAATGGCTGCTCATGCAATCCATGGAAACAAGTGGGCGGCTATTGCAAAGCTTTTGGTTGGGAGAACCGATAATGCAATCAAGAATCACTGGAACTCTACCCTGAGGCGTCGGCACTGCACTGGTGGCCGATGCACACAAGGTGGTGTTATGAAGAGAGCTATTCCGGAGAGGCCTAGGTCGGTTTCAGAAGAACCTTGGCCATTGGGCAATCTTAGTTCCTTAAATGTTAGGGAAGCAATGGAAGCTCCCGCACAAACAGTATCTGAAAGTTATGTTGGGGCATGGCAAATCGGGGATCAGAGTTGCAAAACTGAAGTTGTTGATCCACCTTATCTTGCCCGACCAGTTGCAAAGGTTGGTGCATTCAAACCATACAATGTAGGACCTGCTCAATCATCACAAAAGGAAATGCTGAGCTTTGCCACCAAGTTTGACTCAAACCTTCATCCTTTCAAGCCTGAAAATGGGGTCTGCAAGTTTGTTGATCCTACAAGTTTTGCTGCTGAGGTGCCAAATAAATGTGGGCATGGCTGCTGCAGTTCTCATGGGCAACTTCGTAAGAACTCATTGCTGGGTCCCGAGTTTAATGAGTTTGAAGATCATCCACCAATTTCAGATAGTAGTTTTGCTTCGTTGGTGTCAGAAATTAGCAGCATTGCCTGGATGAAAAGTGGTTTGCAAAGCAGTGACACCTTAGCGCGGTCTGTTCCACCAGCTTAA
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| Protein seq | MSSETAASPPPPPPNPPAADSTHSSPASMTDETHGAGAHPDESQPHRSSSSSSSPPVAVDGETRVPLPVRSLPQPSHPSPPPSGEDEDDVVITGQIAVGDAAGAAMEERVKGPWSSDEDTLLSNLVEKLGPRNWTLIARGIPGRSGKSCRLRWCNQLDPQVKRKPFTEEEDRIIMAAHAIHGNKWAAIAKLLVGRTDNAIKNHWNSTLRRRHCTGGRCTQGGVMKRAIPERPRSVSEEPWPLGNLSSLNVREAMEAPAQTVSESYVGAWQIGDQSCKTEVVDPPYLARPVAKVGAFKPYNVGPAQSSQKEMLSFATKFDSNLHPFKPENGVCKFVDPTSFAAEVPNKCGHGCCSSHGQLRKNSLLGPEFNEFEDHPPISDSSFASLVSEISSIAWMKSGLQSSDTLARSVPPA |
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| Function | Transcription factor MYB1 [UniProtKB/Swiss-Prot:Q42575] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0850400 | Os01t0850400-01 | Chr01 | 36606535 | 36608135 | - | irgsp1_rep | ||
| CDS seq | ATGTCGTCCGAAACCGCCGCTTCGCCGCCGCCGCCGCCGCCGAATCCACCGGCCGCCGACTCCACCCATTCCAGCCCCGCCTCCATGACCGACGAGACGCACGGCGCAGGAGCCCATCCCGACGAGTCCCAACCGCATCGCTCCTCATCGTCGTCCTCCTCCCCTCCCGTGGCCGTCGACGGCGAGACGCGCGTCCCACTCCCAGTCCGGTCCCTGCCCCAACCTAGCCACCCATCGCCGCCTCCTTCGGGGGAGGACGAGGATGACGTCGTCATCACCGGCCAAATCGCAGTGGGTGACGCCGCGGGGGCGGCGATGGAGGAGCGGGTGAAGGGGCCCTGGTCCTCGGATGAGGACACGCTGCTGAGCAATCTGGTGGAGAAACTCGGGCCGAGGAACTGGACGCTGATAGCGCGCGGGATACCCGGGCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAACCAACTCGACCCCCAAGTCAAGCGCAAGCCCTTCACTGAGGAGGAAGACCGCATTATAATGGCTGCTCATGCAATCCATGGAAACAAGTGGGCGGCTATTGCAAAGCTTTTGGTTGGGAGAACCGATAATGCAATCAAGAATCACTGGAACTCTACCCTGAGGCGTCGGCACTGCACTGGTGGCCGATGCACACAAGGTGGTGTTATGAAGAGAGCTATTCCGGAGAGGCCTAGGTCGGTTTCAGAAGAACCTTGGCCATTGGGCAATCTTAGTTCCTTAAATGTTAGGGAAGCAATGGAAGCTCCCGCACAAACAGTATCTGAAAGTTATGTTGGGGCATGGCAAATCGGGGATCAGAGTTGCAAAACTGAAGTTGTTGATCCACCTTATCTTGCCCGACCAGTTGCAAAGGTTGGTGCATTCAAACCATACAATGTAGGACCTGCTCAATCATCACAAAAGGAAATGCTGAGCTTTGCCACCAAGTTTGACTCAAACCTTCATCCTTTCAAGCCTGAAAATGGGGTCTGCAAGTTTGTTGATCCTACAAGTTTTGCTGCTGAGGTGCCAAATAAATGTGGGCATGGCTGCTGCAGTTCTCATGGGCAACTTCGTAAGAACTCATTGCTGGGTCCCGAGTTTAATGAGTTTGAAGATCATCCACCAATTTCAGATAGTAGTTTTGCTTCGTTGGTGTCAGAAATTAGCAGCATTGCCTGGATGAAAAGTGGTTTGCAAAGCAGTGACACCTTAGCGCGGTCTGTTCCACCAGCTTAA
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| Protein seq | MSSETAASPPPPPPNPPAADSTHSSPASMTDETHGAGAHPDESQPHRSSSSSSSPPVAVDGETRVPLPVRSLPQPSHPSPPPSGEDEDDVVITGQIAVGDAAGAAMEERVKGPWSSDEDTLLSNLVEKLGPRNWTLIARGIPGRSGKSCRLRWCNQLDPQVKRKPFTEEEDRIIMAAHAIHGNKWAAIAKLLVGRTDNAIKNHWNSTLRRRHCTGGRCTQGGVMKRAIPERPRSVSEEPWPLGNLSSLNVREAMEAPAQTVSESYVGAWQIGDQSCKTEVVDPPYLARPVAKVGAFKPYNVGPAQSSQKEMLSFATKFDSNLHPFKPENGVCKFVDPTSFAAEVPNKCGHGCCSSHGQLRKNSLLGPEFNEFEDHPPISDSSFASLVSEISSIAWMKSGLQSSDTLARSVPPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0850400 | RBH | 0.0 | 0.0 | 0.856123 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63160 | RBH | 0.0 | 0.0 | 0.220383 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0490600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040420 | RBH | 0.0 | 0.000000 | 0.778847 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039900 | RBH | 0.0 | 2.863575 | 0.819161 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040300 | RBH | 0.151056 | 3.198658 | 1.477804 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039770 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039360 | RBH | 0.0 | 5.339058 | 3.298935 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0603900 | RBH | 1.379625 | 2.4575715 | 3.615523 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039050 | RBH | 0.093081 | 0.0 | 0.217807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0601700 | RBH | 1.130935 | 1.249052 | 6.7602205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039410 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039330 | RBH | 0.0 | 2.167175 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039560 | RBH | 0.132228 | 0.000000 | 0.165143 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039440 | RBH | 0.000000 | 2.793962 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039900 | RBH | 0.0 | 1.276081 | 1.395812 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039580 | RBH | 0.000000 | 0.0 | 0.550015 |
