Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0826800 | OGI:01024340 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:35378733-35379626 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAAAAGGAAGCCCTTTTTCCATTTAGAAAGCTTGAATGAACCCAACCAAATCTCTTTGTACAGGTTGGGGCTCTTTTTACATTTATTCCGTCACCGTTTTCCCCTCATCTCCCGAGCTAAAAACCGCTCAAACCCGGACATGTTTATACATGCGTCGACGGATTGAAGGTGAGAGAACCGGAAATGCCTTCTCTCTCGTGGTATTCACATCGGAAGATCAGAAAGAAAACCAAAAGAATATATATGAGTGGAAAAAGAAGATTGCTCTTCGAGCTCTCCTTAATTAATCCGATTGCTCCTCCACTATGCTCTCGAGCTGCGGCCGCCACACGCCGACCCGACTGCCGCTCCGCCGCCTCCGCTGGCCACCCGACGCCGCCGTCTTCTCGGACAGAAGCTCCCTCAGGTAGTTGTCCTGCTCCGCCGTGCTCGCGGCCGTCGCCGCGCCGTTGCTCTTGTGATGGTGGTGGCTCGGCCGCTTGCTCTTCTTGTTGGAGCTCTGCCGGCTCTTCTTCCTCCTGTCGGCCGGCAGGGTCGCCGAGGGGATGAGGAAGTAGATGCGGCCGCGCTTGAGCTCGGAGTCGGGCGAGACGATGACGAGCTTCTTGGTGGGGCACCCGACGCCGGCGGAGGACCACGTGGTGGTGAGCGTGTGGTTGGGGTGAGCGGCGAGGACGGCGCCGGCGGTGACCGGGCAGCTGAACTCGTCGACGTGGCCGCTGAGGTGGACGATGCGGACGACGTCGAGCGCTCCGCAGGGGAGGACGCAGGCCAGGCAGCACCGCAGGCTGTTGCCCATGCCGGAGTCGTCGTCGTCGTCGTCTTCAACGGCGGCGAAGGTGCTCGATCGCTTGTTGATTGGTTGCTGTTTTGGTTTTCTTGTGAGCTTGAT
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| CDS seq | ATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAA
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| Protein seq | MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGVGCPTKKLVIVSPDSELKRGRIYFLIPSATLPADRRKKSRQSSNKKSKRPSHHHHKSNGAATAASTAEQDNYLRELLSEKTAASGGQRRRRSGSRVGVWRPQLESIVEEQSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0826800 | Os01t0826800-01 | Chr01 | 35378733 | 35379626 | - | irgsp1_rep | ||
| CDS seq | ATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAA
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| Protein seq | MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGVGCPTKKLVIVSPDSELKRGRIYFLIPSATLPADRRKKSRQSSNKKSKRPSHHHHKSNGAATAASTAEQDNYLRELLSEKTAASGGQRRRRSGSRVGVWRPQLESIVEEQSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0826800 | RBH | 0.273092 | 0.276352 | 1.334936 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0474700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038720 | RBH | 0.0 | 0.0 | 2.664698 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038220 | RBH | 0.0 | 0.256484 | 0.084636 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038640 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038100 | RBH | 0.0 | 0.652579 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037710 | RBH | 0.0 | 26.819305 | 6.148856 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0584800 | RBH | 2.564059 | 6.928959 | 0.159176 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037410 | RBH | 0.0 | 2.028240 | 0.143142 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0581200 | RBH | 0.3393985 | 0.2038645 | 0.097094 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037640 | RBH | 0.0 | 0.034183 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037670 | RBH | 0.0 | 6.772087 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037900 | RBH | 3.140977 | 16.837986 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037920 | RBH | 0.251947 | 2.184565 | 0.223071 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037750 | RBH | 0.134779 | 1.577712 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038260 | RBH | 0.0 | 4.941266 | 0.783318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037940 | RBH | 0.0 | 5.334747 | 0.0 |
