Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0818400 | OGI:01104520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:34862487-34865889 | ||||||||
| Gene Symbol | WOX8, OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B | ||||||||||
| DNA seq | GCCCAATACTGCTCCTACAAAGACACTGCCACATTCCTTCTCCTTCCTCCTGCATACTGTCTCTCTCTCTCTCTCTATCTGATCAGCTGTTCCGCTTCCTCCTCTTCTTCTCTCCCCCAACCCCGTAGCCCTCCCACCCATCGAGCCAGGCGGCGGCGCGACGGCCGGTGGCTAAGGCGGCGGCCGGTGCCAAAATCTCGAGCAATCGCGTCGCGCCGTCTGGCCGGCTTGCGACATCGCTCGCCCGAGAGCGTCGTCGTCTTCGAGCTTGTGCCGCGCGGCGCCGTCGCCGCGTGGTCCGAGGGCCCCGTGCCACCGCGTGCAGAGGGCAGAGGCCCATCGCCTCCTCCTCGAGCCACCGCGCTGCCGTGTGCCGTCCCCCTTGTCGTCCTCGAGCCCCTGCGTCGCCGCCGGCCGCCGGGGCTCCTCCTCCTCGTCCTCCTCGTCATCGACGCCCCAATCGGCACCGCCTCCTGGTCGTTAAAACCATCCTCGGGCCTTTCGCCAATTGGAAGGCGCCATCTTTTCCGCATTCTTTCCATCCGGATTCCGGCCGCTGTTGCTGTCTGGCGGAATATCTGTTTCGCCAGATTTTCTTGCGTTTCGATTTCTTTTTATTATTTTCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTCCTTCCATTTCGCTGCTGCGCCAAAGAACACAACTTTCCCAATTCCTTTTCGCCTCCCTGTAGAGGCATGGAGTGGGACAAGGCCAAGGCGTCCTCCGGCGAGGCGGTGGACGACAGGGGCGGAGGGGAAGGAGGGCTCGGGTACGTGAAGGTGATGACGGACGAGCAGATGGAGGTGCTCCGGAAGCAGATCTCCATCTACGCCACCATCTGCGAGCAGCTCGTCGAGATGCACCGCGCCCTCACCGCGCAGCAGGACTCCATTGCAGGTCAGTACAGTTCACCGAGTAGCTTGGTGTAAGGGTTGCATTTACTCTTTCTGCAGAAAGGGGGGGAAAGGTACTCTGTTTATGTCGTGTACTAGTACTAAGTTTGTTTAGGGATGCATCATTGAGTCGAGTTTCAGATGGTCCCTCAGAAAAAGAAATTGTCAGATCTGTAGTAGTAGTAGTTAGTTTGCTTTTAAAGTTGGAGGCAATTTGGCTGGGACCTGTTTAACTATTTTGCAAAAATAACAGGGATCAAGTTTTTGTTTCAGGTGTTTTTAGCAGTTTGCTACTTCATGAACTGATCCCTATACATTGCAATTGCTCTTCCGATTATTATGTTACATTGCTTGGTAATTAAACTGAAAACCATAGAAAGTGCCAGAACATCAATTTGATGCATTGATAGGAAGTTGACAATAGGTTGGGTCCACATTGAATATTGAAATCCTAAATGCATCGTTTTTTTATCCATTATGCTTATTATGTTTGATTTATTTGCTGTAGGTCATATTTCATTGCTACTCTATTACATTTATTTATGTTAGCTGTAAAATTTATCTGGTATACTGTATTAGACACTACTCAGCATAGGCACGGTTATGCTTTTTTAAAATTTTATCCCATTTAGATTTATACTAGTATTTGTGTCCAAAGAGCAGTTCGAATGCAACAAAAGAAATTTAGTATAGTATCACTAGCTAGTGACTCAGAATTGTCATGTGGGACCATTTACCATTTTGTGACATGTGCACCTCCGCAATCTTCTGCTATCTGCAGAATTTGAGCTTGACATGCAGGAATCTCATAACATGTTACTTGTCTTTCACTTGGTCAAACACTAATGCTTCTGATGCAATTTTAATCATTTCATCACACTTGTACGTTTTTTTCGTACTTATCAATTTATATCAAGTACTTAGCTAGTTTTCTTTGAAGCTTATTAATATTTTTGTCCTCGAAAATTATGTGTAGTCATTGTGCATTACCCTTCTTTCAGAAAAGACTCCAAAACATAGTTTGTTTATCTAGGGCTCTAGGCATTTGCCCATTCTCTCTTTCTTTTTTTTTTAAAACTTTTCTTTGATCAATCTGCTGTATACGTTTTAATAGGACAGTTTCTTTGCTGTCAACTGAGAGTTGGTTTCTTCTTCAGGAATGAGGCTTGGTAATCTGTACTGTGATCCTCTAATGGTTCCCGGAGGTCACAAGATCACAGCAAGGCAGCGATGGACACCAACCCCAATGCAGTTGCAGATTCTTGAGAACATCTTTGACCAAGGCAATGGAACACCAAGCAAGCAAAAGATAAAGGACATAACAGCAGAGCTCTCACAGCATGGCCAGATCTCAGAGACAAATGTCTATAACTGGTTCCAGAACAGGCGGGCACGATCGAAACGGAAGCAAGCTGCTTTACCAAATAATAATGCAGAATCTGAAGCTGAAGCGGATGAGGAGTCCCCAACTGACAAAAAACCCAAATCAGATAGGCCGCTTCACCAGAACATAGCCATGAGAGATCACAATAGCGAAAGGATCTCGGAGATGCACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAGTTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGTACCTCCTACAAACACCCTTGCTTCATTTGACACTGTAAAACCGCAAAGAAGTTACTGAAAAAGTTTGGTTTAATTTTGCAGGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCGGGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGATGACGCGGCAATTCTGGATTCTGGTTACTAGGTTCGTTGCATTAGACACCATACTGTTTTCCCCTGTAAAAAGTGAAGCTGGTAACTTGCCGTTCATTTTGCTTACTGAAATTGCGAAGTTTGCCTTACGTCCACACGTTGGTTATCATGGTCTTGTCGACATTCTACGGAGAATAGCTAGTTCTAGTGTAAACCTGTTCTGTTGCTGAATTAGCTGCAAGAAGCCGATAAATAGCACTCTGCACACTTAGGTGTTAGGTGATTGTGTGGATATTTCTTGATGGTGAGTTTGTAACGATCTTCTTTCACTTTGTCCTGAAGGCTGAATCGATCAGCGCTACAAATGAGTTAGTAGTTTTAAAGGTTGCTCTTGTCCATGGTAAAGCTTTTGGTCTGATAAAGTCTCATGATCGCGTTGCCATCTGCCAGAAAATTGGAGTTTCTTCGATTGTGAAGATCATTGAGTTGGAGATTAGACAATGCTTGTTGATGATACTATGGGCATGTTGGCAAGTGGCATGGTTTGCCAGATTTTGACTAAACCAAATGTTGCTTCTTGACTATGTACAATCCTCTATAGCTTCAATGAGCAGTTTTCCCTATGTTGTCCTC
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| CDS seq | ATGGAGTGGGACAAGGCCAAGGCGTCCTCCGGCGAGGCGGTGGACGACAGGGGCGGAGGGGAAGGAGGGCTCGGGTACGTGAAGGTGATGACGGACGAGCAGATGGAGGTGCTCCGGAAGCAGATCTCCATCTACGCCACCATCTGCGAGCAGCTCGTCGAGATGCACCGCGCCCTCACCGCGCAGCAGGACTCCATTGCAGGAATGAGGCTTGGTAATCTGTACTGTGATCCTCTAATGGTTCCCGGAGGTCACAAGATCACAGCAAGGCAGCGATGGACACCAACCCCAATGCAGTTGCAGATTCTTGAGAACATCTTTGACCAAGGCAATGGAACACCAAGCAAGCAAAAGATAAAGGACATAACAGCAGAGCTCTCACAGCATGGCCAGATCTCAGAGACAAATGTCTATAACTGGTTCCAGAACAGGCGGGCACGATCGAAACGGAAGCAAGCTGCTTTACCAAATAATAATGCAGAATCTGAAGCTGAAGCGGATGAGGAGTCCCCAACTGACAAAAAACCCAAATCAGATAGGCCGCTTCACCAGAACATAGCCATGAGAGATCACAATAGCGAAAGGATCTCGGAGATGCACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAGTTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCGGGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGA
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| Protein seq | MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY |
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| Function | WUSCHEL-related homeobox 8 [UniProtKB/Swiss-Prot:Q5QMM3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0818400 | Os01t0818400-01 | Chr01 | 34862487 | 34865889 | + | irgsp1_rep | ||
| CDS seq | ATGGAGTGGGACAAGGCCAAGGCGTCCTCCGGCGAGGCGGTGGACGACAGGGGCGGAGGGGAAGGAGGGCTCGGGTACGTGAAGGTGATGACGGACGAGCAGATGGAGGTGCTCCGGAAGCAGATCTCCATCTACGCCACCATCTGCGAGCAGCTCGTCGAGATGCACCGCGCCCTCACCGCGCAGCAGGACTCCATTGCAGGAATGAGGCTTGGTAATCTGTACTGTGATCCTCTAATGGTTCCCGGAGGTCACAAGATCACAGCAAGGCAGCGATGGACACCAACCCCAATGCAGTTGCAGATTCTTGAGAACATCTTTGACCAAGGCAATGGAACACCAAGCAAGCAAAAGATAAAGGACATAACAGCAGAGCTCTCACAGCATGGCCAGATCTCAGAGACAAATGTCTATAACTGGTTCCAGAACAGGCGGGCACGATCGAAACGGAAGCAAGCTGCTTTACCAAATAATAATGCAGAATCTGAAGCTGAAGCGGATGAGGAGTCCCCAACTGACAAAAAACCCAAATCAGATAGGCCGCTTCACCAGAACATAGCCATGAGAGATCACAATAGCGAAAGGATCTCGGAGATGCACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAGTTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCGGGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGA
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| Protein seq | MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0818400 | Os01t0818400-02 | Chr01 | 34863111 | 34865404 | + | irgsp1_rep | ||
| CDS seq | ATGGAGTGGGACAAGGCCAAGGCGTCCTCCGGCGAGGCGGTGGACGACAGGGGCGGAGGGGAAGGAGGGCTCGGGTACGTGAAGGTGATGACGGACGAGCAGATGGAGGTGCTCCGGAAGCAGATCTCCATCTACGCCACCATCTGCGAGCAGCTCGTCGAGATGCACCGCGCCCTCACCGCGCAGCAGGACTCCATTGCAGGAATGAGGCTTGGTAATCTGTACTGTGATCCTCTAATGGTTCCCGGAGGTCACAAGATCACAGCAAGGCAGCGATGGACACCAACCCCAATGCAGTTGCAGATTCTTGAGAACATCTTTGACCAAGGCAATGGAACACCAAGCAAGCAAAAGATAAAGGACATAACAGCAGAGCTCTCACAGCATGGCCAGATCTCAGAGACAAATGTCTATAACTGGTTCCAGAACAGGCGGGCACGATCGAAACGGAAGCAAGCTGCTTTACCAAATAATAATGCAGAATCTGAAGCTGAAGCGGATGAGGAGTCCCCAACTGACAAAAAACCCAAATCAGATAGGCCGCTTCACCAGAACATAGCCATGAGAGATCACAATAGCGAAAGGATCTCGGAGATGCACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAGTTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCGGGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGA
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| Protein seq | MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0818400 | Os01t0818400-03 | Chr01 | 34863202 | 34865653 | + | irgsp1_rep | ||
| CDS seq | ATGGAGTGGGACAAGGCCAAGGCGTCCTCCGGCGAGGCGGTGGACGACAGGGGCGGAGGGGAAGGAGGGCTCGGGTACGTGAAGGTGATGACGGACGAGCAGATGGAGGTGCTCCGGAAGCAGATCTCCATCTACGCCACCATCTGCGAGCAGCTCGTCGAGATGCACCGCGCCCTCACCGCGCAGCAGGACTCCATTGCAGGAATGAGGCTTGGTAATCTGTACTGTGATCCTCTAATGGTTCCCGGAGGTCACAAGATCACAGCAAGGCAGCGATGGACACCAACCCCAATGCAGTTGCAGATTCTTGAGAACATCTTTGACCAAGGCAATGGAACACCAAGCAAGCAAAAGATAAAGGACATAACAGCAGAGCTCTCACAGCATGGCCAGATCTCAGAGACAAATGTCTATAACTGGTTCCAGAACAGGCGGGCACGATCGAAACGGAAGCAAGCTGCTTTACCAAATAATAATGCAGAATCTGAAGCTGAAGCGGATGAGGAGTCCCCAACTGACAAAAAACCCAAATCAGATAGGCCGCTTCACCAGAACATAGCCATGAGAGATCACAATAGCGAAAGGATCTCGGAGATGCACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAGTTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCGGGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGA
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| Protein seq | MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0818400 | RBH | 0.437401 | 0.679556 | 3.159766 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60270 | RBH | 0.341460 | 0.334659 | 0.804197 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038180 | RBH | 0.285769 | 3.271991 | 2.873350 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037650 | RBH | 0.080719 | 1.774495 | 2.270744 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038060 | RBH | 0.374936 | 5.885867 | 3.041495 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037450 | RBH | 0.058986 | 0.141837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037130 | RBH | 1.953864 | 7.545267 | 6.530272 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0576500 | RBH | 3.864683 | 13.460382 | 12.9368875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036830 | RBH | 0.148092 | 0.303841 | 0.897333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0572800 | RBH | 7.405501 | 15.8253785 | 20.500202 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037070 | RBH | 0.066644 | 0.102191 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037090 | RBH | 0.775404 | 4.886199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037320 | RBH | 0.0 | 12.895219 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037390 | RBH | 0.390918 | 1.061211 | 1.382945 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037150 | RBH | 0.340947 | 2.797544 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037680 | RBH | 0.259360 | 2.441777 | 1.452361 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037360 | RBH | 1.178135 | 8.922991 | 5.703094 |
