Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0717601 | OGI:01090250 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:29878435-29879843 | ||||||||
| Gene Symbol | SAP13, OsSAP13 | ||||||||||
| DNA seq | TCAGAGCTTGTCGACCTTGTCGGCACTGACGACGGGATTGGCGCGGGCGATGGCATCGCGCCCGGCGCGCCCCTGTAATCGTAGCCACAGTCGTGCCTGTCCGAGTAGCGGGTGCGCGCCGCAGAACACGGCGCCGCAGCGGCACTCGAACCCCATCAGCCCCACTCTCCTCCCGCACGCAGCGCACCTGCTCTTCGTCTTCGCCCGCGGCGGCGGCGGCGGAGGCATCGCCCCCTCGTCCACGGGAATGCCCTCCGGCACGGTACCGCGCCGTGAAGCTCCGTGGACGACGATGACGACGGCGCCTGGGACATCACGGTCTGGCGGAGGCTGTCGCGGTAGCACTTGGAGCAGAGGCCGCGGGTGTTGGCAGAGCCGGAGAAGCCACAGCCGTTCGCGCACGGGAGCGGCAGCCGCTCGTCCAGCGTCTCGCTCCCCTGCTCCATCGCTCGCCCGAACGCAGAGGCTTCTCTTCCCCGGGGAGTCGACGATCGAGGTGGTTGGCAGCTGCAAGAAACGTACAGGATAACAGGAATCGGACGGGGATTCGTAGGGTCTGTACCGAACGCGACTTGGTGCCTCAAGGCCTCGGGAAGGTGGGATGATCCGAAGCAAGTTGAATATGATGTGTTTTACAAGGGAGCGCAACCGCGGGCAGTGGAATCTTCGGTTGGTGGTGCCGAGTGACTGGTGCTAGTGGCGCAGCCAGCCGTGCAGGAATGCCAATAAAATTTCTGGTTTTTGCGGGCAGCCGTTTAATCTGGATAGGATGGAGATTGTTCTTCTGGGTCTGATGGTAAACCAGTTAATTAAATCAATTTTGGGCTTCCAGGTCTACAACCATTTTTTGTGTGTGGTGAAGGTGAACAGAGCAAAAAGATTTCATTGTTAAGTTGATAGGATGGGCATCATGCTTTTATGACGATGCTATGCCGCCGTCTACTTGGAGACGTGAATCTGTCCTCTGGCCTTCGCTGCCACCTCCTCCTCCCGATCTACCCTCCTTCGGTGAGTCACTAAATAACCCACAGAGAGGGCAGGTTGCGTACATAGCGGATTCACAGAAGACGAGGAAGTCCTAGTATAGTAAAACAAAATGTCGTTGGCGTTTCGTAAAAAGAATGACGTTGGCAAAAAATAGAGATCACGGATGAGGTTAAATGCGCCAAGTTCATCCTAACCGAGCACGTGAATAAACTCTATTCATATGGTGTTATCTTAACTACTGTAATAAAGAACTAAAACACCCTTAGAGCAATGTCACCCCCATAAAAAAGGTCCAGGGTAGTGATATAATTTCCCGTCCCATATGAATAAAAAAGAGTTCATAAGAGGCAAAAGGGAAGGGTTCTCCATCCATTCTCTCCATCTCCACTACTATCACACATGTCAGATCTAAAGAGAGAATG
More
|
||||||||||
| CDS seq | CATTCTCTCTTTAGATCTGACATGTGTGATAGTAGTGGAGATGGAGAGAATGGATGGAGAACCCTTCAGGACTTCCTCGTCTTCTGTGAATCCGCTATGTACGCAACCTGCCCTCTCTGTGGGTTATTTAGTGACTCACCGAAGGAGGGTAGATCGGGAGGAGGAGGTGGCAGCGAAGGCCAGAGGACAGATTCACGTCTCCAACTGCCAACCACCTCGATCGTCGACTCCCCGGGGAAGAGAAGCCTCTGCGTTCGGGCGAGCGATGGAGCAGGGGAGCGAGACGCTGGACGAGCGGCTGCCGCTCCCGTGCGCGAACGGCTGTGGCTTCTCCGGCTCTGCCAACACCCGCGGCCTCTGCTCCAAGTGCTACCGCGACAGCCTCCGCCAGACCGTGATGTCCCAGGCGCCGTCGTCATCGTCGTCCACGGAGCTTCACGGCGCGGTACCGTGCCGGAGGGCATTCCCGTGGACGAGGGGGCGATGCCTCCGCCGCCGCCGCCGCGGGCGAAGACGAAGAGCAGGTGCGCTGCGTGCGGGAGGAGAGTGGGGCTGATGGGGTTCGAGTGCCGCTGCGGCGCCGTGTTCTGCGGCGCGCACCCGCTACTCGGACAGGCACGACTGTGGCTACGATTACAGGGGCGCGCCGGGCGCGATGCCATCGCCCGCGCCAATCCCGTCGTCAGTGCCGACAAGGTCGACAAGCTCTGA
More
|
||||||||||
| Protein seq | HSLFRSDMCDSSGDGENGWRTLQDFLVFCESAMYATCPLCGLFSDSPKEGRSGGGGGSEGQRTDSRLQLPTTSIVDSPGKRSLCVRASDGAGERDAGRAAAAPVRERLWLLRLCQHPRPLLQVLPRQPPPDRDVPGAVVIVVHGASRRGTVPEGIPVDEGAMPPPPPPRAKTKSRCAACGRRVGLMGFECRCGAVFCGAHPLLGQARLWLRLQGRAGRDAIARANPVVSADKVDKL |
||||||||||
| Function | Zinc finger AN1 domain-containing stress-associated protein 13 [UniProtKB/Swiss-Prot:Q5JLA7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0717601 | Os01t0717601-00 | Chr01 | 29878435 | 29879843 | - | irgsp1_rep | ||
| CDS seq | CATTCTCTCTTTAGATCTGACATGTGTGATAGTAGTGGAGATGGAGAGAATGGATGGAGAACCCTTCAGGACTTCCTCGTCTTCTGTGAATCCGCTATGTACGCAACCTGCCCTCTCTGTGGGTTATTTAGTGACTCACCGAAGGAGGGTAGATCGGGAGGAGGAGGTGGCAGCGAAGGCCAGAGGACAGATTCACGTCTCCAACTGCCAACCACCTCGATCGTCGACTCCCCGGGGAAGAGAAGCCTCTGCGTTCGGGCGAGCGATGGAGCAGGGGAGCGAGACGCTGGACGAGCGGCTGCCGCTCCCGTGCGCGAACGGCTGTGGCTTCTCCGGCTCTGCCAACACCCGCGGCCTCTGCTCCAAGTGCTACCGCGACAGCCTCCGCCAGACCGTGATGTCCCAGGCGCCGTCGTCATCGTCGTCCACGGAGCTTCACGGCGCGGTACCGTGCCGGAGGGCATTCCCGTGGACGAGGGGGCGATGCCTCCGCCGCCGCCGCCGCGGGCGAAGACGAAGAGCAGGTGCGCTGCGTGCGGGAGGAGAGTGGGGCTGATGGGGTTCGAGTGCCGCTGCGGCGCCGTGTTCTGCGGCGCGCACCCGCTACTCGGACAGGCACGACTGTGGCTACGATTACAGGGGCGCGCCGGGCGCGATGCCATCGCCCGCGCCAATCCCGTCGTCAGTGCCGACAAGGTCGACAAGCTCTGA
More
|
|||||||
| Protein seq | HSLFRSDMCDSSGDGENGWRTLQDFLVFCESAMYATCPLCGLFSDSPKEGRSGGGGGSEGQRTDSRLQLPTTSIVDSPGKRSLCVRASDGAGERDAGRAAAAPVRERLWLLRLCQHPRPLLQVLPRQPPPDRDVPGAVVIVVHGASRRGTVPEGIPVDEGAMPPPPPPRAKTKSRCAACGRRVGLMGFECRCGAVFCGAHPLLGQARLWLRLQGRAGRDAIARANPVVSADKVDKL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0717601 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51990 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0718000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031640 | SBH | 0.215361 | 2.469188 | 0.843987 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031210 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031660 | SBH | 0.0 | 4.987609 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030870 | SBH | 0.096500 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030550 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0496000 | RBH | 0.385439 | 0.34134 | 0.255126 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030280 | SBH | 0.0 | 0.217047 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0488900 | RBH | 0.4575705 | 0 | 0.61025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030930 | SBH | 0.172616 | 0.0 | 0.037134 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031150 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030810 | SBH | 0.0 | 0.0 | 2.630709 |
