Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0685200 | OGI:01085540 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:28242906-28246259 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAATTTTGTATTACCATGTGGAAAATACACTAACAAGCGGGTTTTTATGCGGGTAGCGGGACTAGCACTTCATTGATCAGGGTTGGGCTTGCTACCTTGGTTTGGGTGATTTTCAGGTGAACCAGATTGCTGTTGCTGCTGCTGCTCTTGTCCTGCGCCTGCACTGGTTTCAGGATGGAAATTGATGGGGAACTTGGTGACGCTGGGCTTGTCTGCCAATATGTTCCTCTGCACCCGGTCAATCAGCAGCTTCGCAGGAGGCTCCTCCCGAAGCTGCTCATCATCGTTGTCATTGTTCACATAGTAACCTACTCTGATGAACTCTTGACCCATGTAGGAACAAGTTAATAGCAGCACAATAACACCAATTATGTCTTCCTTACGGATCTTTGACGGGTCAGGAGGATCAGCCTGAAAACGGAAATGTGCATATCATTCTCATGATTCAGACATACATCCAAGATAGCAGCAAAAATGCAGCAGGTCCAGTGCAAAATGAGCACAGGTCTCTGCACAGCTGAGAAACTGAAATGCCATATCAGATTCAAGTTCAACACTAGTCTCTGAGTTCATGATGCAGATCTTGTACTCGGTTTGCCACTAAAATATACTTATTTACCTGGAGAACAAAACGGTATGTCCCAACATTCACAGGGCCAACAAGCACACTCTCAAGCAGCTGATCATAATTTTCATCCTCAGCCGATCCAACATATATAAGCTTCCACTCCAGATCTGAAAGAAAGTCACTTAGTACTACTTCATAGAACTAATCCACAAAAATGAACAATACTCGTGACTAATGCAGGAAGATAAATCAGCACTACTACATGTGTTTGGAGTTCTGTAGGATGAAAATACTTCAGAGTTCAGATGCGTGAGAACAGATGATAAGCAGCGCACATCAATGAAAGCATAATAAATCACTGCAGGCACCTCTCAACATCAAGATTAAATTACGAGTCATGACCAGGATAAAAAAAATGTAAGAGAGGATTTATTGCGTAGACTAAGGTGCAGAACAGATTCCTAAATAACACATGTATAGAAGAGACTTATTTTTTACTGGTACAAAACTGAACAAATATAATGGTGTTATCAGCTATTTATAGCCAGCATATTCATAGATAAGTCAATTTTCAGTGGAATATCATCCAGAATGTTTGCACATATCTCCGAATAAGCACTAGACAACAAAAAAAAGAGGAAAATAAAATATCTGAAAAAACGAAAGGTGGTAAATTACAGTAATATCATCCTTTTTCTCAATATGAAACAACCATGTTAAATTGGCAAGTTGTTTCAAAAGGGGGTAACAAAACTGATGGATGCTGATGTAACAACACCAAGCAGATGGAATATTTACAAGATAAATTGGAACGATGGTTACTAACCATATGTTGAGTCAAACTTAATCCCTGTTCCTGCACGAGATCCAGAAGATCCCCATAATCCAGTTTTCTTTGATGATGTAGCACTTCCATCTGGTATTGACTGAATCCTATCAGGTAAGGCAGTAACCAGATCACCACGGATTGCAAGTTCTTCTTTTGAAAGCCCTTTAACCTGGCATTGGCATAGAAAAATCTTTAGAACTAGTATTTTGTTTCAAGGAAAATCTTAGAGCAATACTAAATCAACCAAATTGAACAGTCCATTCGGGTTAAAGCCTTGCTGAAATAAAACTTGGACGTGCACCAGGAACACCTTGAATACATGTCTGAGTTCTTTAAACAAAAGATATGTATGAAGGTAATTGTCCAATATTGTTATGCCGAGGAAAGTTCTATAAAGTACAAGCACCTAGTCACCTACCGACTCAATAAACAACACAGCTCCTGTGCTATGCATTTGTTCCTTTTTTCCTTCTAACAAAATGACATATAGATATCCTTCTTATAATGCATTGCCTACATCACATGGTACCAAAGAATCTAGAAGAATTTCCACAGGGTAAATTAGGAGTCATCAACAGTCAGCTTGAGTACTCAAACTTAAATGTCCCAAATGTTCAAGAGAAGAACTTAGGAATCAACTTTGTTCTAGTTCTACTTCTACATTAAGAGCTATCGGATATATCTCAACCTCGCAAATCAAAACATAGATCCACGACCAGAGACATGCATTTTTCTTAATGCATTGCCATTACGAACTACGTAAAAGCATAGACAGCATGACATCCATTAAGAATGGTCAATTCAATTCCTACAAAATCCCTATGGAGTTCCTGCTCCAAACAGGGTCTGCACGACTGTGCACATTCACCAAATCAACAATACTTAATAGCATGGCCTACTTTGTAGAAGAACTGCCCTGAGAAAGCGCATAAAACTCCTAAATTAATTTACGCACCCAAAGAATACATGTTTCCAGACAATGTAACCTGCATTGCAAATGTTCTAGTTGGACCTGCTCCAAATCAATTATACTTCCCCACATTTTTTAAAAAAAATACAACTTGTTGTTTCCATCAGAAAAAAATCGACTAGAGCTCAGCAAACATTTGAAAACAAAGCATAAGAATCACTCTCCTGGCACAGCAATCAGTTTGCGTTCAATCATCGATTAATGCCATATGCTAAATTTAGAAATCGTCACTCTTGTGATCATCCCAGAAAGCTACTAAGGTCACATCTCTGAAGCACAGTGCAAGCAGGAACAAGCTCCTCGCACCAACCACCTTGCATATCTACGTACCGACTAGCTATGCAGAGCAACAGAGGAGAGAGGACTAGAGAAGCATCAATAACCTTCTTCAGGGCGAGCCGCTGCAGCTTGGGCAGATCCTCCTCGAGGAGCTTGGCCTTCGTTCCGCGGATCTCCGCGTTCAGCGCGACCACCGTGGCGCGGTTCTTCTCCTGCTTCGCCGCCTCCGCTTTCTGCAGCGACACCCGAATACCCGATCAGATCAAGATCAGATCACACCCGCTGCGGGCCTGCGGCAGAATGCGAGAGAGAGAGAGAGGAAGGGAGGCAATCAGGCGGCAACAGTGCAATACCTCGAGGCATTCGTTGAGGTCAGCGTCGACCGAGGCGTAGAGGCGCGCGAAGGGGTCCTCGCCGGCGACGCCGGAGCCGTGGAGCTTCTCGGCGTCGTACCTGCCGTACTTCTGGCAGATGGCGTCCACCCGCGTCAGGATGTCGATCACGCTCATCTTCTTCTACTACTTCCCCGCCTCCGCTTCGCCGCCGTGGCTGGTGGGAGTGGTCGGTTGCGCTGACCGGACGGCGGTTGGGGAGGGCGGGGTGAGACGGCGGCGATGAGGTGCGGGGTGGTGATGGTGATCAAGCGATGGAGGAGGTTGGCAGGGCGGCCGGGCCGCCTGGGCGGGTGGCCGCACAGCTTGGCTCC
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| CDS seq | ATGAGCGTGATCGACATCCTGACGCGGGTGGACGCCATCTGCCAGAAGTACGGCAGGTACGACGCCGAGAAGCTCCACGGCTCCGGCGTCGCCGGCGAGGACCCCTTCGCGCGCCTCTACGCCTCGGTCGACGCTGACCTCAACGAATGCCTCGAGAAAGCGGAGGCGGCGAAGCAGGAGAAGAACCGCGCCACGGTGGTCGCGCTGAACGCGGAGATCCGCGGAACGAAGGCCAAGCTCCTCGAGGAGGATCTGCCCAAGCTGCAGCGGCTCGCCCTGAAGAAGGTTAAAGGGCTTTCAAAAGAAGAACTTGCAATCCGTGGTGATCTGGTTACTGCCTTACCTGATAGGATTCAGTCAATACCAGATGGAAGTGCTACATCATCAAAGAAAACTGGATTATGGGGATCTTCTGGATCTCGTGCAGGAACAGGGATTAAGTTTGACTCAACATATGATCTGGAGTGGAAGCTTATATATGTTGGATCGGCTGAGGATGAAAATTATGATCAGCTGCTTGAGAGTGTGCTTGTTGGCCCTGTGAATGTTGGGACATACCGTTTTGTTCTCCAGGCTGATCCTCCTGACCCGTCAAAGATCCGTAAGGAAGACATAATTGGTGTTATTGTGCTGCTATTAACTTGTTCCTACATGGGTCAAGAGTTCATCAGAGTAGGTTACTATGTGAACAATGACAACGATGATGAGCAGCTTCGGGAGGAGCCTCCTGCGAAGCTGCTGATTGACCGGGTGCAGAGGAACATATTGGCAGACAAGCCCAGCGTCACCAAGTTCCCCATCAATTTCCATCCTGAAACCAGTGCAGGCGCAGGACAAGAGCAGCAGCAGCAACAGCAATCTGGTTCACCTGAAAATCACCCAAACCAAGGTAGCAAGCCCAACCCTGATCAATGA
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| Protein seq | MSVIDILTRVDAICQKYGRYDAEKLHGSGVAGEDPFARLYASVDADLNECLEKAEAAKQEKNRATVVALNAEIRGTKAKLLEEDLPKLQRLALKKVKGLSKEELAIRGDLVTALPDRIQSIPDGSATSSKKTGLWGSSGSRAGTGIKFDSTYDLEWKLIYVGSAEDENYDQLLESVLVGPVNVGTYRFVLQADPPDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLREEPPAKLLIDRVQRNILADKPSVTKFPINFHPETSAGAGQEQQQQQQSGSPENHPNQGSKPNPDQ |
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| Function | Probable histone chaperone ASF1A [UniProtKB/Swiss-Prot:Q9C9M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0685200 | Os01t0685200-01 | Chr01 | 28242906 | 28246259 | - | irgsp1_rep | ||
| CDS seq | ATGAGCGTGATCGACATCCTGACGCGGGTGGACGCCATCTGCCAGAAGTACGGCAGGTACGACGCCGAGAAGCTCCACGGCTCCGGCGTCGCCGGCGAGGACCCCTTCGCGCGCCTCTACGCCTCGGTCGACGCTGACCTCAACGAATGCCTCGAGAAAGCGGAGGCGGCGAAGCAGGAGAAGAACCGCGCCACGGTGGTCGCGCTGAACGCGGAGATCCGCGGAACGAAGGCCAAGCTCCTCGAGGAGGATCTGCCCAAGCTGCAGCGGCTCGCCCTGAAGAAGGTTAAAGGGCTTTCAAAAGAAGAACTTGCAATCCGTGGTGATCTGGTTACTGCCTTACCTGATAGGATTCAGTCAATACCAGATGGAAGTGCTACATCATCAAAGAAAACTGGATTATGGGGATCTTCTGGATCTCGTGCAGGAACAGGGATTAAGTTTGACTCAACATATGATCTGGAGTGGAAGCTTATATATGTTGGATCGGCTGAGGATGAAAATTATGATCAGCTGCTTGAGAGTGTGCTTGTTGGCCCTGTGAATGTTGGGACATACCGTTTTGTTCTCCAGGCTGATCCTCCTGACCCGTCAAAGATCCGTAAGGAAGACATAATTGGTGTTATTGTGCTGCTATTAACTTGTTCCTACATGGGTCAAGAGTTCATCAGAGTAGGTTACTATGTGAACAATGACAACGATGATGAGCAGCTTCGGGAGGAGCCTCCTGCGAAGCTGCTGATTGACCGGGTGCAGAGGAACATATTGGCAGACAAGCCCAGCGTCACCAAGTTCCCCATCAATTTCCATCCTGAAACCAGTGCAGGCGCAGGACAAGAGCAGCAGCAGCAACAGCAATCTGGTTCACCTGAAAATCACCCAAACCAAGGTAGCAAGCCCAACCCTGATCAATGA
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| Protein seq | MSVIDILTRVDAICQKYGRYDAEKLHGSGVAGEDPFARLYASVDADLNECLEKAEAAKQEKNRATVVALNAEIRGTKAKLLEEDLPKLQRLALKKVKGLSKEELAIRGDLVTALPDRIQSIPDGSATSSKKTGLWGSSGSRAGTGIKFDSTYDLEWKLIYVGSAEDENYDQLLESVLVGPVNVGTYRFVLQADPPDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLREEPPAKLLIDRVQRNILADKPSVTKFPINFHPETSAGAGQEQQQQQQSGSPENHPNQGSKPNPDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0685200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029430 | RBH | 0.0 | 0.0 | 0.815937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029020 | RBH | 0.0 | 0.959141 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029410 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028320 | RBH | 0.573909 | 0.000000 | 2.257257 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0469200 | RBH | 0.117677 | 1.3379325 | 0.7891715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028060 | RBH | 0.0 | 0.142483 | 0.107662 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0458200 | RBH | 0.090695 | 1.78155 | 4.0836505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028220 | RBH | 0.0 | 5.568733 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028680 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028450 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028920 | RBH | 0.0 | 0.0 | 0.981133 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028590 | RBH | 0.0 | 0.0 | 0.0 |
