Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0673300 | OGI:01084020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:27656267-27657910 | ||||||||
| Gene Symbol | Os_F0653 | ||||||||||
| DNA seq | ATCGATCTGAAGTAAAACCCACAACGAAAATTTCCCCCCAATTTCCCGATCCCTAAATCCCTAATCCCTAATCCCTAATCGCTCCCCGGTGCCCCGATCCCCAATCGGTTGATCGCCGCCAGAGACGCGCAGCGTCAGAGCTCGCCGCTCACCGGCGACGGGCGGCGCCGGATTTCGCCGTCAGCCGGCGGCGCGCGGCGACGGTGGCCAGGCTCCAATCAGCTCCCTTAATCCGTAAATTTGAAAGGTAAGGTCTCTCATGGCTCGTTCGCCACGGCCGCCGTGGTCCGATGGCCTCCCGCCCGAGCTTCTCGGCGTCATCTTCGAGCAGCTGAGCTGCCTCGCCGACCGCGCCTGCTTCGCGGCCGTCTGCCGCCCGTGGCGCACCGCCGCGGCCTTCGTCGACGCCCCGCAGCGGGGGCTCCCGTGGCTGCTCCTCCCGTCCCGCGACGCGCCGTCCTTCTTCAGCCTCCACTCCGGCGCCACCCGCCACCTCACCCTCCCGGAGGGCGTCCGCGGCGCGCGCCTGTGCGGCGCCCACGACGGCGGCTGGGTCGCCGTCGCCGTGGACCCGTGGCGAGGGTTCGCGGCCGTCAACCTCTTCACCGGCGTGAGGGTTACCCTCCCGGAGAAGCTGAGGCTCGAGGTCCCCTACGCCCACGGGTACGGGCCCGTGACCGTCACCAGCCACCACCCCATGCTCGTCCGCACCATCGTCTTCTCCGCGCCGCCCGCCTCGCCGGACTGCATCGCCGCCGCGCACGTCTCGAGCGCCTCCAACATCGCCTTCTGGCAGCCTGGGATGTCCAGGCACTGGATCGCGAGCCGGCCTGAGCCGGACGTGATCCAGGACATCATCTACTACAGCGGCGAGGAGAAGCAGGGCTTCCACGTCCTCACCAACAGGGAGGAAGTCCTGGTGTTCGCGCCCCGCGCCGGCCGCGACCCCAACGCGCTGCTGGAGATGACCTGCGCATCCTACCAGATGCGCCGCCGCGCCAACCACCTGCCGGCGTCGTTCATCGCGACGCGCTACCTGGTGGAGTCCCGCGGGAAGCTGCTCATGGTGGTGCGCCACTGCACGGGCAACCCCCGCGTGCGGCGGCGCACGCGCATGTTCCGGGTCTTCGAGATGAGCCTCCTCCCCACGGGGGCGTACTGGCTGGAGATCCACGAGCTGTCCGGGCGGGCGCTCTTCCTCCGGCGAGGCTGCTCCAGGGCGGTCGAGGTGTCGCAGTTCAAGATGCTCAAGGAGGACACCATCTACTTCCTCGACGACGCCAACGTCGACATGTGCGACTCCATGGTGATGAACAACGGGAGCAGGTACAACATGGGCATTTACAGGGATGGTAAGAAGATCAGAGCCGGCTCCCGGCAATTCCCTCGTGGATTTACCGCGGATTGCTCGCCTCCAATCTGGCTTGTCCCCTGATCCATATCGTGCAAAGGATCAGTGAAATGTTGTGGTAGTCCCTGGCTAGTGGCTAGTAGTACCTTCTGCTCTGGCTTAGATTTCTCCGATTCTGCATGTTTGTGCTATAGAGGCAGACTAGTATCTATCAAAAGAAAATGTACCTTGAGTTCTTGATATGGTGCAAACAAAACAATACTCCATCAATGACTTTCTTTTTTGTGTTGTGG
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| CDS seq | ATGGCTCGTTCGCCACGGCCGCCGTGGTCCGATGGCCTCCCGCCCGAGCTTCTCGGCGTCATCTTCGAGCAGCTGAGCTGCCTCGCCGACCGCGCCTGCTTCGCGGCCGTCTGCCGCCCGTGGCGCACCGCCGCGGCCTTCGTCGACGCCCCGCAGCGGGGGCTCCCGTGGCTGCTCCTCCCGTCCCGCGACGCGCCGTCCTTCTTCAGCCTCCACTCCGGCGCCACCCGCCACCTCACCCTCCCGGAGGGCGTCCGCGGCGCGCGCCTGTGCGGCGCCCACGACGGCGGCTGGGTCGCCGTCGCCGTGGACCCGTGGCGAGGGTTCGCGGCCGTCAACCTCTTCACCGGCGTGAGGGTTACCCTCCCGGAGAAGCTGAGGCTCGAGGTCCCCTACGCCCACGGGTACGGGCCCGTGACCGTCACCAGCCACCACCCCATGCTCGTCCGCACCATCGTCTTCTCCGCGCCGCCCGCCTCGCCGGACTGCATCGCCGCCGCGCACGTCTCGAGCGCCTCCAACATCGCCTTCTGGCAGCCTGGGATGTCCAGGCACTGGATCGCGAGCCGGCCTGAGCCGGACGTGATCCAGGACATCATCTACTACAGCGGCGAGGAGAAGCAGGGCTTCCACGTCCTCACCAACAGGGAGGAAGTCCTGGTGTTCGCGCCCCGCGCCGGCCGCGACCCCAACGCGCTGCTGGAGATGACCTGCGCATCCTACCAGATGCGCCGCCGCGCCAACCACCTGCCGGCGTCGTTCATCGCGACGCGCTACCTGGTGGAGTCCCGCGGGAAGCTGCTCATGGTGGTGCGCCACTGCACGGGCAACCCCCGCGTGCGGCGGCGCACGCGCATGTTCCGGGTCTTCGAGATGAGCCTCCTCCCCACGGGGGCGTACTGGCTGGAGATCCACGAGCTGTCCGGGCGGGCGCTCTTCCTCCGGCGAGGCTGCTCCAGGGCGGTCGAGGTGTCGCAGTTCAAGATGCTCAAGGAGGACACCATCTACTTCCTCGACGACGCCAACGTCGACATGTGCGACTCCATGGTGATGAACAACGGGAGCAGGTACAACATGGGCATTTACAGGGATGGTAAGAAGATCAGAGCCGGCTCCCGGCAATTCCCTCGTGGATTTACCGCGGATTGCTCGCCTCCAATCTGGCTTGTCCCCTGA
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| Protein seq | MARSPRPPWSDGLPPELLGVIFEQLSCLADRACFAAVCRPWRTAAAFVDAPQRGLPWLLLPSRDAPSFFSLHSGATRHLTLPEGVRGARLCGAHDGGWVAVAVDPWRGFAAVNLFTGVRVTLPEKLRLEVPYAHGYGPVTVTSHHPMLVRTIVFSAPPASPDCIAAAHVSSASNIAFWQPGMSRHWIASRPEPDVIQDIIYYSGEEKQGFHVLTNREEVLVFAPRAGRDPNALLEMTCASYQMRRRANHLPASFIATRYLVESRGKLLMVVRHCTGNPRVRRRTRMFRVFEMSLLPTGAYWLEIHELSGRALFLRRGCSRAVEVSQFKMLKEDTIYFLDDANVDMCDSMVMNNGSRYNMGIYRDGKKIRAGSRQFPRGFTADCSPPIWLVP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0673300 | Os01t0673300-01 | Chr01 | 27656267 | 27657910 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCGTTCGCCACGGCCGCCGTGGTCCGATGGCCTCCCGCCCGAGCTTCTCGGCGTCATCTTCGAGCAGCTGAGCTGCCTCGCCGACCGCGCCTGCTTCGCGGCCGTCTGCCGCCCGTGGCGCACCGCCGCGGCCTTCGTCGACGCCCCGCAGCGGGGGCTCCCGTGGCTGCTCCTCCCGTCCCGCGACGCGCCGTCCTTCTTCAGCCTCCACTCCGGCGCCACCCGCCACCTCACCCTCCCGGAGGGCGTCCGCGGCGCGCGCCTGTGCGGCGCCCACGACGGCGGCTGGGTCGCCGTCGCCGTGGACCCGTGGCGAGGGTTCGCGGCCGTCAACCTCTTCACCGGCGTGAGGGTTACCCTCCCGGAGAAGCTGAGGCTCGAGGTCCCCTACGCCCACGGGTACGGGCCCGTGACCGTCACCAGCCACCACCCCATGCTCGTCCGCACCATCGTCTTCTCCGCGCCGCCCGCCTCGCCGGACTGCATCGCCGCCGCGCACGTCTCGAGCGCCTCCAACATCGCCTTCTGGCAGCCTGGGATGTCCAGGCACTGGATCGCGAGCCGGCCTGAGCCGGACGTGATCCAGGACATCATCTACTACAGCGGCGAGGAGAAGCAGGGCTTCCACGTCCTCACCAACAGGGAGGAAGTCCTGGTGTTCGCGCCCCGCGCCGGCCGCGACCCCAACGCGCTGCTGGAGATGACCTGCGCATCCTACCAGATGCGCCGCCGCGCCAACCACCTGCCGGCGTCGTTCATCGCGACGCGCTACCTGGTGGAGTCCCGCGGGAAGCTGCTCATGGTGGTGCGCCACTGCACGGGCAACCCCCGCGTGCGGCGGCGCACGCGCATGTTCCGGGTCTTCGAGATGAGCCTCCTCCCCACGGGGGCGTACTGGCTGGAGATCCACGAGCTGTCCGGGCGGGCGCTCTTCCTCCGGCGAGGCTGCTCCAGGGCGGTCGAGGTGTCGCAGTTCAAGATGCTCAAGGAGGACACCATCTACTTCCTCGACGACGCCAACGTCGACATGTGCGACTCCATGGTGATGAACAACGGGAGCAGGTACAACATGGGCATTTACAGGGATGGTAAGAAGATCAGAGCCGGCTCCCGGCAATTCCCTCGTGGATTTACCGCGGATTGCTCGCCTCCAATCTGGCTTGTCCCCTGA
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| Protein seq | MARSPRPPWSDGLPPELLGVIFEQLSCLADRACFAAVCRPWRTAAAFVDAPQRGLPWLLLPSRDAPSFFSLHSGATRHLTLPEGVRGARLCGAHDGGWVAVAVDPWRGFAAVNLFTGVRVTLPEKLRLEVPYAHGYGPVTVTSHHPMLVRTIVFSAPPASPDCIAAAHVSSASNIAFWQPGMSRHWIASRPEPDVIQDIIYYSGEEKQGFHVLTNREEVLVFAPRAGRDPNALLEMTCASYQMRRRANHLPASFIATRYLVESRGKLLMVVRHCTGNPRVRRRTRMFRVFEMSLLPTGAYWLEIHELSGRALFLRRGCSRAVEVSQFKMLKEDTIYFLDDANVDMCDSMVMNNGSRYNMGIYRDGKKIRAGSRQFPRGFTADCSPPIWLVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0673300 | RBH | 0.297012 | 0.228444 | 2.068428 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48250 | RBH | 0.181631 | 0.215668 | 0.506673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0539300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028760 | RBH | 0.309871 | 2.878918 | 1.041373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028290 | RBH | 0.0 | 0.0 | 0.527632 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028730 | RBH | 0.232164 | 3.687094 | 1.069599 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027910 | RBH | 0.039335 | 0.065071 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027660 | RBH | 1.720745 | 1.904634 | 1.871081 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0459800 | RBH | 1.153179 | 3.868298 | 4.2098865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027380 | RBH | 0.053368 | 0.0 | 0.217666 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0448400 | RBH | 1.3003335 | 3.8344155 | 3.1646295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027680 | RBH | 0.0 | 0.067021 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027540 | RBH | 0.100607 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027860 | RBH | 0.0 | 3.482767 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027980 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027730 | RBH | 0.065122 | 1.529692 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028200 | RBH | 0.259146 | 0.0 | 0.709005 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027870 | RBH | 0.262134 | 2.180395 | 0.431503 |
