Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0625900 | OGI:01077220 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:24981269-24982666 | ||||||||
| Gene Symbol | OFP2, OsOFP2, OsOFP03, OsOFP22, OsOFP05 | ||||||||||
| DNA seq | GCATTTGATGGCACGATCGATATGCCAATTCTTCATGTAAATACAAAGTAGACTTAACTGCAAACCAAGATAACACGCATTAATGCCGATCGCTCGCTGCATCTCCTAACTACGTACACCTCTGCTCTACTGGCCTCACAACGAACGAGTTATAGCTTGGTTGGCTAATCAAACAAGGCTTTGGTCGATCGGTTGGTTGGCCACTGTCACTGATCAGTGATCGCTCACTCACTCCTCGCCGAAGACGGCCTCCCATACGTCCTCGAAGGCGGCGAGGATGGCCGGGTGGTGCTGCGGCGAGTTGAGCGAGAGGTACGACCCCAGGAGCTCCTCCATCTCCGGCACGCTGCAGATGCGCCGCTCCACGACCATCTCCACCATCGAGCTCCGGAAGTCGGCGTACGGGTTGCTCGACCGCTTCACCACCGCCATGCCCGCGCCGGCGGCGGTGTCGTCGTCCGTGCCCAGCTGCCTCTTGATCGCCGTCTCCTCCTTCTTCTTCATGTCGTTGTGCTGCTTCTTCGTCGCCGCCACGGATACCACCGGCCGGAAGGCGTCGGCCGGGTCGCTGGTGATCCTCGCCGACGCGCGCCGCGCCGGCGGGCGGCGCGCCGGCGCGTTCTTGTGGCCCTTCCTGGCGAGGCTGCTGCTGCTGTTGGTGTGGTAGAACTCCGAGGTGGAGTCGGAGGAGAAGCTGAGGGACGAGAAGAGCGTCCTCGTGTCGGCCTCCTCGCCGCCCTCCTCGTCGGTGCTGAACGGCGCGAGCTCGTCGTCGGTCACCGTGGACGACGAGGAGCTGTACTGCCCCGGTGCCCCCCTCGGGAGCCGCGCGCGGCCCCAGGAGGACGACGGGCAATGCCGCCTGGATGTCGACGGCGAAGAGCGCGCCTTTCTCCTCGCCCTGCTCTGTTTCCTGCCATCCTTCGTCGGCAACGACGACGAGTACGGCAGGAGGGGCGCGTCGGAGTGGACGGAGCGGCGGCCGGAGGTGGCCCCGGCCCCGCCGGTGCAGTCGATGGAGATGTGGACCAGCGACGCGCTGCGTCGGCGTCGGCGGGGACGGCCGGGGGCATCAAGCTTGGGCCTCTGGTAGGTGCAGGGGGTGCAGAAGTACGGCGAGGGCGGCGGCGGCGGTTCTTGGTGCGTGTCGGCATTGGTCTTGTCGAGGCTGACGAAGGCCGTGGACGAGGTGGTCGTTGTCGTGGTGGTGGTGTTGGTGGTGCAAGTAGATCGCACTAGGATCTGAGCCAGCCTCTGCTTCAGCCAGCCACCGGCGCCCAAGCCGTCGAGGCGGCGGTGGGGGCTCTTGTCCACGAAAGGCGTGTGCATCGCGGTATTCTTTGGGTGTTTGGAAATGGGTTGAGGAGGGGAGAGTGGAGTTTTTTTTTGGTTTATCTC
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| CDS seq | ATGCACACGCCTTTCGTGGACAAGAGCCCCCACCGCCGCCTCGACGGCTTGGGCGCCGGTGGCTGGCTGAAGCAGAGGCTGGCTCAGATCCTAGTGCGATCTACTTGCACCACCAACACCACCACCACGACAACGACCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGA
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| Protein seq | MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVRSTCTTNTTTTTTTTSSTAFVSLDKTNADTHQEPPPPPSPYFCTPCTYQRPKLDAPGRPRRRRRSASLVHISIDCTGGAGATSGRRSVHSDAPLLPYSSSLPTKDGRKQSRARRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSSSSTVTDDELAPFSTDEEGGEEADTRTLFSSLSFSSDSTSEFYHTNSSSSLARKGHKNAPARRPPARRASARITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLGTDDDTAAGAGMAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVFGEE |
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| Function | Transcription repressor OFP7 [UniProtKB/Swiss-Prot:Q9ZU65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0625900 | Os01t0625900-01 | Chr01 | 24981269 | 24982666 | - | irgsp1_rep | ||
| CDS seq | ATGCACACGCCTTTCGTGGACAAGAGCCCCCACCGCCGCCTCGACGGCTTGGGCGCCGGTGGCTGGCTGAAGCAGAGGCTGGCTCAGATCCTAGTGCGATCTACTTGCACCACCAACACCACCACCACGACAACGACCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGA
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| Protein seq | MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVRSTCTTNTTTTTTTTSSTAFVSLDKTNADTHQEPPPPPSPYFCTPCTYQRPKLDAPGRPRRRRRSASLVHISIDCTGGAGATSGRRSVHSDAPLLPYSSSLPTKDGRKQSRARRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSSSSTVTDDELAPFSTDEEGGEEADTRTLFSSLSFSSDSTSEFYHTNSSSSLARKGHKNAPARRPPARRASARITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLGTDDDTAAGAGMAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVFGEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0625900 | RBH | 0.0 | 0.179096 | 0.426836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43610 | RBH | 0.0 | 0.112717 | 0.102816 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025890 | RBH | 0.0 | 3.515253 | 0.421975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025510 | RBH | 0.0 | 1.438213 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025850 | RBH | 0.0 | 1.493274 | 0.443467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025170 | RBH | 0.0 | 0.039509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024930 | RBH | 0.0 | 4.579766 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0419800 | RBH | 1.7973535 | 4.5291255 | 6.084213 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0408600 | RBH | 2.7631445 | 1.077029 | 2.998448 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024870 | RBH | 0.0 | 0.081386 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025110 | RBH | 0.0 | 4.229228 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024990 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025250 | RBH | 0.210025 | 2.077170 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024990 | RBH | 0.000000 | 0.0 | 0.0 |
