Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0589400 | OGI:01071400 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:22991813-22994258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAGTTGGAAAGACATGTCGTATGAGCTGTGCTAATTTATGGACATGGCTTTAATATGACAAGTTGGTGGTGGTGTTTTAGCATTACATTACAACTAATTAGCACATGCTGCAGTCATTGTACTCTCTGTTCTTGTTGGATTCCAACATTGGGTATAAGAATTTGAACTAGTCACTATTTGACAGTAAAATGCACTCGATAGGTTGCATTTTGGAGACATGCCACACGTGTACATCTTGACGCCTAAAAATTACTCTTCATCTGTCTGCCTAGCATTTGATTTTGAAGGTATAGATAAATCTAGGATCTGCCACAGGATGTCTGCCTAACATTTGATTTTGAAGGTATAAATAAATCTACGTTCTATGCCACAGGAAGGGAAGGAATGTCATTGCTTACAGATTCTTCCACTGCATGTGTCTCCCATCCATCCTTCAGGCTTCTAAGGACCACGTATTCCATTCCCATCTGATGAGGGGCTGATGCTTCAATGCCATTCTCGTTCTGAATTCACCTCACCATGGAACATTCACCGACTACTTTTTCCTTCAAATCATCTCTCTTGTTGCTTTTTCATTCAAATCAATCTCTCTTGTTCCCTTGTTGTATCAGCATGGGACTATTTTTTTCCTTCAAATCACCTTTTCCTTATTGGATCAGCATCGCGAATCCAACCTCAAGTTGTAGCTCGCGTTAACCATGCCCTGCGAAAGCTGAACTTTCTGATGAATTCAGAGTTTCAGACGACCCAGCTGCATCCTGGTAAGTGTTCAGAGCTCTTCCCGCCTCCGGCTTCCCCACCTCCTCCGCCGCCGCCGCCGCTGCCGCCGCAGCCTCGCAGCAATCTCTCGTAGTTCCAGCCGCCGCCGTCGGGCTGCAGCGCTCTGAGCTCCCTCGCCGCGACGCTCCCGATAGAGCAGTTCTTGTGAGCCAGGCAGCAGTGCAGGAGCGTCGTCCACGCCAGCGCGCTGGGCGCGAACGGCATGCCGAGGAGCAGGCCGTGCGCGTCCCGCAGCCGCCCCGCGCGGCCGAGGAGATCGATGGCGCCGACGTAGTGCTCGAACGCGCGCTCCACCCCGTACTCGACCTCCATGGCGTCGAAGTAGGCCATCCCCTCGGCGACCAGCTCGGCGTGGCTGCACGACGCCAGGATGGCGACGAAGGTGCTGCCGTTGTAGAGCCCCAGCGCCAGCGCGCGCTCCGCGAACGCCAGCGCTCGCCTCCCGCGGCCGTTCTGGCCGAGCCCCTGTATCGCGGTGTTCCACGACACGACGTCGCGCGCCGCCATCTCGTCGAACACCTTCTCCAGATCGGCTGTCGAGCCGGAGCAGCTGTACATGTTCATCAGGGAGTTGCCGACGAAGACATGGCTGCGCGAGAGGCCGCTCTTGACGGCGCGCGCGTGGACTTGCCTCCCCAGGGTGAGCAGGGACAGCACCGAGCAGATGTGCAGGACCGTCGTGTAGATTGATGCGTCCGGCTTAGCGCCGCCATTGTCGCGATCACCCAACCTCAGCAGATCGATGAAGAGGCGGAGCGCGTCTTCTCCTCGGCGGTTCTGCCACAAACAGGATATGATGACGTTCCATGTGAAGGCGTCCTTGTTCTTCATCGATCTGAAGAGATATAGAGCCTTGTCGATGAGCTTGTGCCGCGAGTATCCATCCATCATGATGGTCCAAGAACTTGCATCCTTGAAGCGAATCCCGTCGAACACCTTCTCGGCGTCACACAACGCGCCGACCTTGGCGTGCACGTCGATCAAACCGTTCCACACAAAGGTGTTATCTGTATTCTCCTCCTCCAGGAGCTTGAGTGCCAGGGCATGGAGCTGCGTTGCCATGGCGAGCGACTGGAGAGCCACGCAGGCCTTGAGCAACGAGCTGAGCGTGTGCGCGTTGGGCAGCACCCCGCGTTCGTAGAGCTCGCCGTAGAGCGCCGCGAACAGCTGGACCGCCTCGCGGGGCTCCCCGTTCCGGACATGGCAGGACACCATGGCCGTCCAGGTGAACACGTTGTGCTTTCCCAGCGGCAGGTCGTCGAAGAGGCGGCGCGCCACGGAGGCCGCCCCGGCGCGGGAGAGGCCCCCGATCATGGTGGCGTACGAGGCGGCGTTCTTCCCGGGCATCTCGTGGAAAAACGAGAGCGCCCGCTCTATGCGCCCTGCGCCGACGAGCATGCCCAGCGCCTTATTCCAGGCGACCTGGTTCTTCGGGGGCATTCCGTCGAACAGGTCGAGGGCCTCGTTGTCCGCCTGCCCGGATTTCCCCGCCCCCACCAAGATCTCTGGGGTTTTCAGGGCCAAACGGTACAGCGACGGAAGCTCGTGGGCCGCCTTGGCGATCGGCCGCGCCGCCATACTCCGCCGCCGCCGCCGCCGACGAGGCGCTCCTGCGTGTTGGCCACTCCTGCTGGCCGAGGGGATGAAGATTTGAGAGGTATCATC
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| CDS seq | ATGGCGGCGCGGCCGATCGCCAAGGCGGCCCACGAGCTTCCGTCGCTGTACCGTTTGGCCCTGAAAACCCCAGAGATCTTGGTGGGGGCGGGGAAATCCGGGCAGGCGGACAACGAGGCCCTCGACCTGTTCGACGGAATGCCCCCGAAGAACCAGGTCGCCTGGAATAAGGCGCTGGGCATGCTCGTCGGCGCAGGGCGCATAGAGCGGGCGCTCTCGTTTTTCCACGAGATGCCCGGGAAGAACGCCGCCTCGTACGCCACCATGATCGGGGGCCTCTCCCGCGCCGGGGCGGCCTCCGTGGCGCGCCGCCTCTTCGACGACCTGCCGCTGGGAAAGCACAACGTGTTCACCTGGACGGCCATGGTGTCCTGCCATGTCCGGAACGGGGAGCCCCGCGAGGCGGTCCAGCTGTTCGCGGCGCTCTACGGCGAGCTCTACGAACGCGGGGTGCTGCCCAACGCGCACACGCTCAGCTCGTTGCTCAAGGCCTGCGTGGCTCTCCAGTCGCTCGCCATGGCAACGCAGCTCCATGCCCTGGCACTCAAGCTCCTGGAGGAGGAGGTGGGGAAGCCGGAGGCGGGAAGAGCTCTGAACACTTACCAGGATGCAGCTGGGTCGTCTGAAACTCTGAATTCATCAGAAAGTTCAGCTTTCGCAGGGCATGGTTAA
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| Protein seq | MAARPIAKAAHELPSLYRLALKTPEILVGAGKSGQADNEALDLFDGMPPKNQVAWNKALGMLVGAGRIERALSFFHEMPGKNAASYATMIGGLSRAGAASVARRLFDDLPLGKHNVFTWTAMVSCHVRNGEPREAVQLFAALYGELYERGVLPNAHTLSSLLKACVALQSLAMATQLHALALKLLEEEVGKPEAGRALNTYQDAAGSSETLNSSESSAFAGHG |
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| Function | Pentatricopeptide repeat-containing protein At2g35030, mitochondrial [UniProtKB/Swiss-Prot:O64766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0589400 | Os01t0589400-01 | Chr01 | 22991813 | 22994258 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGCGCGGCCGATCGCCAAGGCGGCCCACGAGCTTCCGTCGCTGTACCGTTTGGCCCTGAAAACCCCAGAGATCTTGGTGGGGGCGGGGAAATCCGGGCAGGCGGACAACGAGGCCCTCGACCTGTTCGACGGAATGCCCCCGAAGAACCAGGTCGCCTGGAATAAGGCGCTGGGCATGCTCGTCGGCGCAGGGCGCATAGAGCGGGCGCTCTCGTTTTTCCACGAGATGCCCGGGAAGAACGCCGCCTCGTACGCCACCATGATCGGGGGCCTCTCCCGCGCCGGGGCGGCCTCCGTGGCGCGCCGCCTCTTCGACGACCTGCCGCTGGGAAAGCACAACGTGTTCACCTGGACGGCCATGGTGTCCTGCCATGTCCGGAACGGGGAGCCCCGCGAGGCGGTCCAGCTGTTCGCGGCGCTCTACGGCGAGCTCTACGAACGCGGGGTGCTGCCCAACGCGCACACGCTCAGCTCGTTGCTCAAGGCCTGCGTGGCTCTCCAGTCGCTCGCCATGGCAACGCAGCTCCATGCCCTGGCACTCAAGCTCCTGGAGGAGGAGGTGGGGAAGCCGGAGGCGGGAAGAGCTCTGAACACTTACCAGGATGCAGCTGGGTCGTCTGAAACTCTGAATTCATCAGAAAGTTCAGCTTTCGCAGGGCATGGTTAA
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| Protein seq | MAARPIAKAAHELPSLYRLALKTPEILVGAGKSGQADNEALDLFDGMPPKNQVAWNKALGMLVGAGRIERALSFFHEMPGKNAASYATMIGGLSRAGAASVARRLFDDLPLGKHNVFTWTAMVSCHVRNGEPREAVQLFAALYGELYERGVLPNAHTLSSLLKACVALQSLAMATQLHALALKLLEEEVGKPEAGRALNTYQDAAGSSETLNSSESSAFAGHG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0589400 | RBH | 0.000000 | 0.515903 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40680 | RBH | 0.208555 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023510 | RBH | 0.0 | 0.0 | 0.391487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023080 | RBH | 0.137855 | 0.0 | 0.196939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023410 | RBH | 0.518212 | 0.0 | 0.404643 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022820 | RBH | 0.043875 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0383800 | SBH | 7.219013 | 15.884262 | 20.7731015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022450 | RBH | 0.059726 | 0.038687 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0372800 | RBH | 2.250563 | 7.8356105 | 4.5416895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022690 | RBH | 0.103047 | 0.000000 | 0.146444 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022500 | RBH | 0.073287 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022830 | RBH | 0.0 | 0.0 | 0.398912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022500 | RBH | 0.0 | 2.432069 | 0.0 |
