Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0502700 | OGI:01055620 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:17420279-17421266 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAGTTGTTTGTAAAGAGTCTAATCAGCAGAGAGATCAGTTCATCCCCCCAACGATCCGACCGTCCATCTCCCCTCCCACGGATCGACGGGCCCACCACCCTCCCCTTCCCCCAACCGTTTAAATACGCCACCCCACCGGCCTCGTCTCCATCGCGCACTCGCATTCGACGACCCAAGAAAAGGAAAAAAAAAGAAAAACAATCCTCCACGCCTTCGAGCGCAGCAGGAACCAGCTTAGCTAGACTAGCCATGGACGCCGCCGGAGCCGGAGCGGGTGGGAAGCTGAAGAAGGGAGCCGCCGGGAGGAAGGCCGGTGGGCCGAGGAAGAAGGCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGAAGGGCCGCTACGCGCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTAATAACGCTCGCCCACGCCCACGCCCCCACTTTGTCGTCAACTTCATCTGCAGTGCAGGTTTCGATCTGTGTGCTGATCTGGTGGTGCCCTCTCTGTTCGATTGCTTAGGTGCTGGAGCTCGCCGGGAACGCGGCCAGGGACAACAAGAAGAACAGGATCATCCCGCGCCACGTGCTGCTGGCGATCAGGAACGACGAGGAGCTCGGCAAGCTGCTGGCCGGCGTGACCATCGCGCACGGAGGCGTGCTGCCCAACATCAACCCGGTGCTGCTGCCCAAGAAGACGGCGGAGAAGGCCGCCGCCGCCGGCAAGGAGGCCAAGTCGCCCAAGAAGGCGGCCGGCAAGTCCCCCAAGAAGGCCTAGACGTCGGCGCCTCGCTTTGCTTGTTTAGCTGGAGTAGATTGGACGGGATGTGTGTCTGTTAGTAGTCTGCTGATGCTGTTGATCTAATCTATAGTGGTGTCGTTGAACCTTGTGTCTGTTCAAGAAGATAAATCTAAGATATGTT
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| CDS seq | ATGCAGTTGTTTGTAAAGAGTCTAATCAGCAGAGAGATCAGTTCATCCCCCCAACGATCCGACCGTCCATCTCCCCTCCCACGGATCGACGGGCCCACCACCCTCCCCTTCCCCCAACCGTTTAAATACGCCACCCCACCGGCCTCGTCTCCATCGCGCACTCGCATTCGACGACCCAAGAAAAGGAAAAAAAAAGAAAAACAATCCTCCACGCCTTCGAGCGCAGCAGGAACCAGCTTAGCTAGACTAGCCATGGACGCCGCCGGAGCCGGAGCGGGTGGGAAGCTGAAGAAGGGAGCCGCCGGGAGGAAGGCCGGTGGGCCGAGGAAGAAGGCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGAAGGGCCGCTACGCGCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTAATAACGCTCGCCCACGCCCACGCCCCCACTTTGTCGTCAACTTCATCTGCAGTGCTGGAGCTCGCCGGGAACGCGGCCAGGGACAACAAGAAGAACAGGATCATCCCGCGCCACGTGCTGCTGGCGATCAGGAACGACGAGGAGCTCGGCAAGCTGCTGGCCGGCGTGACCATCGCGCACGGAGGCGTGCTGCCCAACATCAACCCGGTGCTGCTGCCCAAGAAGACGGCGGAGAAGGCCGCCGCCGCCGGCAAGGAGGCCAAGTCGCCCAAGAAGGCGGCCGGCAAGTCCCCCAAGAAGGCCTAG
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| Protein seq | MQLFVKSLISREISSSPQRSDRPSPLPRIDGPTTLPFPQPFKYATPPASSPSRTRIRRPKKRKKKEKQSSTPSSAAGTSLARLAMDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVITLAHAHAPTLSSTSSAVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA |
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| Function | Probable histone H2A.5 [UniProtKB/Swiss-Prot:Q94E96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0502700 | Os01t0502700-00 | Chr01 | 17420279 | 17421266 | + | irgsp1_rep | ||
| CDS seq | ATGCAGTTGTTTGTAAAGAGTCTAATCAGCAGAGAGATCAGTTCATCCCCCCAACGATCCGACCGTCCATCTCCCCTCCCACGGATCGACGGGCCCACCACCCTCCCCTTCCCCCAACCGTTTAAATACGCCACCCCACCGGCCTCGTCTCCATCGCGCACTCGCATTCGACGACCCAAGAAAAGGAAAAAAAAAGAAAAACAATCCTCCACGCCTTCGAGCGCAGCAGGAACCAGCTTAGCTAGACTAGCCATGGACGCCGCCGGAGCCGGAGCGGGTGGGAAGCTGAAGAAGGGAGCCGCCGGGAGGAAGGCCGGTGGGCCGAGGAAGAAGGCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGAAGGGCCGCTACGCGCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTAATAACGCTCGCCCACGCCCACGCCCCCACTTTGTCGTCAACTTCATCTGCAGTGCTGGAGCTCGCCGGGAACGCGGCCAGGGACAACAAGAAGAACAGGATCATCCCGCGCCACGTGCTGCTGGCGATCAGGAACGACGAGGAGCTCGGCAAGCTGCTGGCCGGCGTGACCATCGCGCACGGAGGCGTGCTGCCCAACATCAACCCGGTGCTGCTGCCCAAGAAGACGGCGGAGAAGGCCGCCGCCGCCGGCAAGGAGGCCAAGTCGCCCAAGAAGGCGGCCGGCAAGTCCCCCAAGAAGGCCTAG
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| Protein seq | MQLFVKSLISREISSSPQRSDRPSPLPRIDGPTTLPFPQPFKYATPPASSPSRTRIRRPKKRKKKEKQSSTPSSAAGTSLARLAMDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVITLAHAHAPTLSSTSSAVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0502700 | RBH | 0.0 | 0.0 | 5.677299 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g31800 | RBH | 0.0 | 0.0 | 1.432179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0279200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018640 | RBH | 0.237276 | 22.920723 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0018260 | RBH | 0.0 | 6.697971 | 1.995034 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0018550 | RBH | 0.0 | 13.737780 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017920 | RBH | 0.0 | 0.663793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017820 | RBH | 0.0 | 8.621958 | 1.411683 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0296800 | RBH | 17.374802 | 7.64971 | 6.4878135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017950 | RBH | 0.0 | 1.463329 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0292800 | RBH | 18.0893215 | 0.843532 | 72.4518475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017840 | RBH | 0.000000 | 0.910312 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017790 | RBH | 0.0 | 22.354753 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018040 | RBH | 0.0 | 7.882961 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017780 | RBH | 0.0 | 2.193603 | 0.863286 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017690 | RBH | 0.000000 | 19.772650 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G018260 | RBH | 0.0 | 7.241023 | 1.778661 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017890 | RBH | 0.591840 | 35.870361 | 2.398382 |
