Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0353633 | OGI:01043860 | 10/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:14174019-14174501 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACATATTACATCGGAACTTCAGTGAATAGAAACACACAAACATCAGCTTGCTCGAAAAGATTGGCTCCAACCAAAGCATTCCATCCAGTTGTGAGGGTTGCTCGCTTATCCTTGAATTTCATCAGTTTCATCGGCATCCAACCATCGCCGGCCTCCCGCCGATGCAGCGCCGCCGTCGCATCGAGGCCGTTGCCCTCCGACCCTGACGAATCGCCACTGCCACCGATGCAGCACAGCCGTCGCATCCAGACAGCCATGCCCGCCGTCGCCGACGAATCGCCGCCGCCGCCAATGCAGCGTAGCCGTCGCATCCAGACTGCCACGCCCGCCGCCGTTGACGATTCGCCGGGGCTACCCGATCTAGGCCACCATCGGGTCGCCAGTCCAACCTGCTCCCTCCGCCATCTATCGCCGCCATGCATTCTAGGGTTTCTTTCTCTCGCTGCTCTAGCCTGTCGAATACGCGGCTTCTGTTCTCTCGCC
More
|
||||||||||
| CDS seq | ATGCATGGCGGCGATAGATGGCGGAGGGAGCAGGTTGGACTGGCGACCCGATGGTGGCCTAGATCGGGTAGCCCCGGCGAATCGTCAACGGCGGCGGGCGTGGCAGTCTGGATGCGACGGCTACGCTGCATTGGCGGCGGCGGCGATTCGTCGGCGACGGCGGGCATGGCTGTCTGGATGCGACGGCTGTGCTGCATCGGTGGCAGTGGCGATTCGTCAGGGTCGGAGGGCAACGGCCTCGATGCGACGGCGGCGCTGCATCGGCGGGAGGCCGGCGATGGTTGGATGCCGATGAAACTGATGAAATTCAAGGATAAGCGAGCAACCCTCACAACTGGATGGAATGCTTTGGTTGGAGCCAATCTTTTCGAGCAAGCTGATGTTTGTGTGTTTCTATTCACTGAAGTTCCGATGTAA
More
|
||||||||||
| Protein seq | MHGGDRWRREQVGLATRWWPRSGSPGESSTAAGVAVWMRRLRCIGGGGDSSATAGMAVWMRRLCCIGGSGDSSGSEGNGLDATAALHRREAGDGWMPMKLMKFKDKRATLTTGWNALVGANLFEQADVCVFLFTEVPM |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0353633 | Os01t0353633-00 | Chr01 | 14174019 | 14174501 | - | irgsp1_rep | ||
| CDS seq | ATGCATGGCGGCGATAGATGGCGGAGGGAGCAGGTTGGACTGGCGACCCGATGGTGGCCTAGATCGGGTAGCCCCGGCGAATCGTCAACGGCGGCGGGCGTGGCAGTCTGGATGCGACGGCTACGCTGCATTGGCGGCGGCGGCGATTCGTCGGCGACGGCGGGCATGGCTGTCTGGATGCGACGGCTGTGCTGCATCGGTGGCAGTGGCGATTCGTCAGGGTCGGAGGGCAACGGCCTCGATGCGACGGCGGCGCTGCATCGGCGGGAGGCCGGCGATGGTTGGATGCCGATGAAACTGATGAAATTCAAGGATAAGCGAGCAACCCTCACAACTGGATGGAATGCTTTGGTTGGAGCCAATCTTTTCGAGCAAGCTGATGTTTGTGTGTTTCTATTCACTGAAGTTCCGATGTAA
More
|
|||||||
| Protein seq | MHGGDRWRREQVGLATRWWPRSGSPGESSTAAGVAVWMRRLRCIGGGGDSSATAGMAVWMRRLCCIGGSGDSSGSEGNGLDATAALHRREAGDGWMPMKLMKFKDKRATLTTGWNALVGANLFEQADVCVFLFTEVPM |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0353633 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43090 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0175450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019990 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
