Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0275500 | OGI:01029630 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:9626942-9630057 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCGAATTCATTCTGGTATTGAATATTTGCATACTTCGTAACTTTGAGCACTACATTCAGTTTTTTTTTCCCGATGGTGTGGATGTAGGACTAGACCGGATGTAGGACTAGACCACCCAAGTTTAAGACCTCGTTGAGGAGAGTTTTTTATTTTATTTTATTTACAAAAGCATTGCTGAATCACTGAAACATGGTGAATTCTAACAAGCAAGGCCTTGCAACGAGAGGATCAAGAACTTACTGCTTAGCAGAGTGCTGCCTGAGCGTGATGTCAAGAACCCTAAGAGCCTCCATCGAGTTCTCTGTCTCCTGCCCTCTTAGCACCTCGGCAATGGCGCTCATGGGGTCCTTCGCCGCGAAGGAGATCTCCACCATGAACTTCTTCACCGCCATCGGCCGCTTCATCCTCTTCCTGTCACTCCCCCCAGGGCTTCCATCGTCTCCTCCGGAGCTCCGCCTCGTCGTCGTCCTGCACACAGCAAAAAAACCAAAGAAATGGTGCTCACCACCTTGACAATTTTTTTTTAGATACAGGAAAATGGTTACATCTCCGGCCTCTGCCAACAGACGTCACCACCTGGACATAGCAACAGTTACATATCCATAGTTTACTTGGCTTATCAGCCGTGAACAAAATTTAATTTATGAAACTTAATTTCAAAGTTGATTTTGAGGGTTCTTTTGTCGTAGTTTAGTTTTGGTTGATTTGTTCATTTTTAAACGGCTTATCAAGTATCAACCCATAATTATTATTATTATTTATTTTTCAAGCGCTTTGTGATCGATACTACCTTCCAGATGAGGAGGCGTCCTCCATGACGACGACGAACTGGTGCTTCGTCTGCAGCAGAGCTCCGGCGGTGAAGAGGCCCTTCTCGCCGTTGTAGGCGAACTCCCTGCCGGCGAGCTCCGACGCATAGGTCTCCTGCAGCTTGTCGACGACTCGCCGGCACACGCCTTTCGCCTCCACGGGGCCGCCGTCCTCGTACTTCACCTCCACCTGCAGCCATGGACACACAACAACACACATGAAATGCAAGGATTCAGACATGGAATTTCAGATGCAGAAATGACCAAGATAGCAATGAAGAAGAAAAAAATTGCGGGGATTGTGTTGGTGTACGTGGTAATGGTAGAAGTGGCCGTCCATTCGCCGGACAGAGACTCTGAAGTGGTTCGTCAAAAGCTGTATCGACTGCCCTCTCGTGCCAAACCCTTTCCTCGACATTGGAAGCTTCTTGGGTGGCTTGGCCATGGCCGAAGGTTCGCCCTCGTCACCATGAGACTCCATCCAAGCTCAGCTCAACTTGTAACTGCAGACCAAAAAAAAAAAGAAGAGAAAAAGGAAAGATTGCACGATGATTTGATGGATGGGATTGGGAAAATAACCAAACAAACTGAAGTTTCCTAAAGTTAAGACCAGGTCAATGAATAGATTATGGTGATCAGGACTAGCATACATAAAGATTAAAATCGATAGATATAGCCGCGATCCTGGAACCAAAACGGTGAACTATGTATACAGAAATGAAGAATCAAAACAGTACATTTTGGAAAAAGCAATTCGAGACTATATATATTTCGACAGCCTATATATAAGCAATGAGGGTCCACGAGGATGATAGATTAGGAAACTTGTATATAGACAGGCGACTCCAGAAAGCTATCCTTTTCACATTTGGAAAATAGCCTTATTTGCACAAAAGTGTAGTATTGGTAAGTTGTAAATAAAAAAGTTATATTTTCTCGATGACATCAAATAAAAGTCAAGTTTGACACACATCAATAACGAAAAGTAAATCATTCTTTATTATTAAAAAAAGAGGAATATAAGTGAGTTGGCCCGCATATAAAGGGCTACCTACTTAAATGGCTTATAAGGATTTAACGGTTAACCCACTTACACGGTTACACCTTGTCCTACCGTACGTACGGCTATACTCCTAACATCACTCCTCCTTGCACCCGCATATGAGTATAGGCCCTAAAAGCCTCCTCCTAAAACTTTTTTAAAAAAAGTCATGAGCATCACGATGTCGTTGGCGCACAAACCTTCATACACAACCTAAACTGTGAAAGTAATCCTCTTTAGAAAAAAAAAGTTGATGGATGGTTACCAAATAAAAAAAACTGCAATATTCAAATGTGAAATAAAACAGTGATTCTACAATCCTTGGTAAAATGAGAATCATCATGAGTTGTTAAAAAACTATATCCATCCCAAAATATAGTAATTTCTAGCTACGTATTTGGACATGTGTCTAGATACATATCATTTGGATAATGGTCTGTCCAAATACATAGCTAAAAAATTACTATATTTTGAGATAAAGATAGTTTGCTACAAAATGTGGAATTCCCATACATCTTTGAGGACTTGGAAAAAAAACTCTGAAGTCTAAAGAGAAGAAGCAAACAGTGGCGTTTTATCCTAAGTGGAGCTGTGGAGGTGATGATGCAAAACCCCAACCAAAGTTAATATTGCAGCACACGGAAGATGTGGTTTTTGTCTCTGTGTTTCATATAGATGCACATCTCTTCTTTATTTAACCGATATCAAAGTTGCTAAATGGTGCATGGTGCCCCCATTTTCTTGTTTTTACCAACCGATCGAAAGAAAGATCAAAATAGCAAAATTCAGGAATTAAAAAGAACCCAACCGTCCTTACAGAGCAAAAAACCGCAGATCAAACCCTGGCCAAAAAAGAACTCTGCAACAACATCAAAGATCAGCAAAGGTAACTGCACCGAAACGAACTAAAGCAGAGAGATCGACGAACTCTGACGATGAAACTGTGAAGAGACAGAAATGAGATGGACGAGATTGAAGAGGGGAATCAGAGAGCACAAAATCGGTAGGCTAGTGAGATGCCAATGCAACTCAACCAAGACAAGGTAGCAGCAGGAGAGAGAGGAAGAAGCAGCTTTTCAACTCAAAACATATAACATATATAGAAGAAAAATGAGGAGAACGAGAATAAGATTGGCAATTCATATGGTATATCTTTTGAGATATATTAGGATACAAAGAACCAATATTCACTGTACATCTCTCTTTTGTACACGCTTCAAAGAAGAAAGAAGAAGAGAAGGAGGCATCTCACCTTGGTGTGGCC
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| CDS seq | ATGGAGTCTCATGGTGACGAGGGCGAACCTTCGGCCATGGCCAAGCCACCCAAGAAGCTTCCAATGTCGAGGAAAGGGTTTGGCACGAGAGGGCAGTCGATACAGCTTTTGACGAACCACTTCAGAGTCTCTGTCCGGCGAATGGACGGCCACTTCTACCATTACCACGTGGAGGTGAAGTACGAGGACGGCGGCCCCGTGGAGGCGAAAGGCGTGTGCCGGCGAGTCGTCGACAAGCTGCAGGAGACCTATGCGTCGGAGCTCGCCGGCAGGGAGTTCGCCTACAACGGCGAGAAGGGCCTCTTCACCGCCGGAGCTCTGCTGCAGACGAAGCACCAGTTCGTCGTCGTCATGGAGGACGCCTCCTCATCTGGAAGGACGACGACGAGGCGGAGCTCCGGAGGAGACGATGGAAGCCCTGGGGGGAGTGACAGGAAGAGGATGAAGCGGCCGATGGCGGTGAAGAAGTTCATGGTGGAGATCTCCTTCGCGGCGAAGGACCCCATGAGCGCCATTGCCGAGGTGCTAAGAGGGCAGGAGACAGAGAACTCGATGGAGGCTCTTAGGGTTCTTGACATCACGCTCAGGCAGCACTCTGCTAAGCAGTAA
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| Protein seq | MESHGDEGEPSAMAKPPKKLPMSRKGFGTRGQSIQLLTNHFRVSVRRMDGHFYHYHVEVKYEDGGPVEAKGVCRRVVDKLQETYASELAGREFAYNGEKGLFTAGALLQTKHQFVVVMEDASSSGRTTTRRSSGGDDGSPGGSDRKRMKRPMAVKKFMVEISFAAKDPMSAIAEVLRGQETENSMEALRVLDITLRQHSAKQ |
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| Function | Protein argonaute 15 [UniProtKB/Swiss-Prot:Q5NBN9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0275500 | Os01t0275500-00 | Chr01 | 9626942 | 9630057 | - | irgsp1_rep | ||
| CDS seq | ATGGAGTCTCATGGTGACGAGGGCGAACCTTCGGCCATGGCCAAGCCACCCAAGAAGCTTCCAATGTCGAGGAAAGGGTTTGGCACGAGAGGGCAGTCGATACAGCTTTTGACGAACCACTTCAGAGTCTCTGTCCGGCGAATGGACGGCCACTTCTACCATTACCACGTGGAGGTGAAGTACGAGGACGGCGGCCCCGTGGAGGCGAAAGGCGTGTGCCGGCGAGTCGTCGACAAGCTGCAGGAGACCTATGCGTCGGAGCTCGCCGGCAGGGAGTTCGCCTACAACGGCGAGAAGGGCCTCTTCACCGCCGGAGCTCTGCTGCAGACGAAGCACCAGTTCGTCGTCGTCATGGAGGACGCCTCCTCATCTGGAAGGACGACGACGAGGCGGAGCTCCGGAGGAGACGATGGAAGCCCTGGGGGGAGTGACAGGAAGAGGATGAAGCGGCCGATGGCGGTGAAGAAGTTCATGGTGGAGATCTCCTTCGCGGCGAAGGACCCCATGAGCGCCATTGCCGAGGTGCTAAGAGGGCAGGAGACAGAGAACTCGATGGAGGCTCTTAGGGTTCTTGACATCACGCTCAGGCAGCACTCTGCTAAGCAGTAA
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| Protein seq | MESHGDEGEPSAMAKPPKKLPMSRKGFGTRGQSIQLLTNHFRVSVRRMDGHFYHYHVEVKYEDGGPVEAKGVCRRVVDKLQETYASELAGREFAYNGEKGLFTAGALLQTKHQFVVVMEDASSSGRTTTRRSSGGDDGSPGGSDRKRMKRPMAVKKFMVEISFAAKDPMSAIAEVLRGQETENSMEALRVLDITLRQHSAKQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0275500 | RBH | 0.0 | 0.0 | 0.555555 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16860 | RBH | 0.0 | 0.0 | 0.142904 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012270 | SBH | 4.160873 | 27.062971 | 53.421860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011950 | SBH | 1.937177 | 2.937148 | 26.190777 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012290 | SBH | 3.928113 | 20.435196 | 80.186470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0011740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011830 | RBH | 0.0 | 0.0 | 5.551790 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0161500 | RBH | 0.0184245 | 0.039211 | 0.083897 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011780 | RBH | 0.0 | 0.0 | 0.282439 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0158900 | RBH | 0.0097125 | 0.080216 | 0.2026205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0011780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0011760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011920 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0011760 | RBH | 0.0 | 0.0 | 1.288859 |
