Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0259600 | OGI:01027260 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:8701299-8708612 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCTATAAATTATAATCTAATTTGAGTTTAATTCCAAAAGAATATTACGAGCCCTTAGCCCGGTCAAAATATCGGGCGTGGAAAGCCGCCATTCTATATCAGCTTCATGCTAGAGCACCTCTGCTGTTGATTCAGTAATTCACTTCTAAATTTCTAGGACAAAATTTCTATGTTTCCTTTCCTAAATAATATGTGGAGCTCCAGAGTCCAGATTCCGGCCATTGGATCAAGCCATCCGAGCACCGTATCGCGTCATTAGCCCTGCACAATTTCAGAACTTCCAGCAGGAAGAACACGGGAAGACTATCGAAGTGTGTACTCAGAAAGCTTATTTGCAACTGTCAACTTGGGAGAATTGCCCTTCAAAGCTATTCGTCAGCTTCTCGGCAGCTGCTTCTACCCTCTGATTGTCCTGAAATTAAGGTAAATAAATGAACTCTGTAAAACTACTGCTCTGGGGAATTAGATGTAGTACTCCATACTGGAAATGCATACTCCCTCCATCCCAAAATAAATCAACCTAAGGCAGGATGTAACATTACCTAGTACAATGAATCTGGACAAGGGCATATCCGGATTCGTTGTACTAAGTAGTGTCACATCATAGCATAGATTAGCTAGAAACTAAGGTGTCCCATTAGTGCACAAACAGGACAAGCTTACATCTGTATGCAAATTAGTTGTTGGTGGTTAACGATTGTCTTTGCTTTGATTAAAACAAGGGTGCCAAAAAAGTACATAACTTCTCTTATGTTATTTCCAAAGAACTCGTAAAGACAAAAGTTTTACATGCTAGTATGCTGTTCTGCGGAATAAATGGAGTCTGCTACAAAGAGATCGAGCACATACCTTCCCAATAAAACTCACAACCAAAGGCCCAGATCTTGAGATCCGATAACAACCTGCACGTCAAAAACATTAACCACCAGATCAGAAATTTTGCAAAATCATTTCCCACAAAGAAAATAATGGGAGCATCAAATCATACCTATGTATACATCAGAAAAATCTATGCATAGTTTTGCAACCACTGGGGCAATTTTAACCTGAAAAAGAACACAGTAAAAGTTTATCAGATACTGAGATACATAATGAAGTACTTCTCCAAAAGTAAAAGTTCCAATTAACTTGCTAGTTAATTGGAGAAAATTTTCTCCAAGAAGTGAGAAAATTCCCTACAGGATTTTCCAAGAAGTTTTTTTTTTCTTTTTGAGAATTAATGGATAAGGTGGATACTAAACGTAAAAATGGAATTAACAAGTGTGCAATATTTATCCAATAGTTGCCAGGAAAGTAACATCTAGGATTGAAGGAAGGTAAAGACAAATAGTGAAATATAAAACAGCTACACAAAGAAACAATCGCGAGGCATAGCATTTGGTCAAAATCAAGATTATTGAGATACTACATCAATAGGGGTCATTTACATTGTTCTATTTTAATGATTGATAAGTGAAATTATTTAAGACCAAACATACTATAATGATCTATTTTGGAACTGACAGGGATAAAATATGAAGGAACTGATTCTGATAACACAACTAGAATAAAAACAAAGCAAATTCTGACTGAGTCGAAGAGACATACATCTAATAGCGACGTGCAGAGATGCTTTGACACAAAAGATTTAGCCATCACTAAACCGCTCTCTTGTGTGTCTAGAAGACAACCCCACTCCGTTTCAAGCTCATCCACATTAGTTGCAGCGAGAATGACCACATTTTTGCATTTGATCTGCATAAGAAACCAGTTATCTATAAGACAAATGAAAAAAAAAGGAAGCAATTTCCGACTCTCTTTTCATAGTTTACAGTAGGCATTTTCGTCACTTCCTAATTGGATGTCAGGCTTTTCATTCAGGCATACTTACTAAACTTTGGATATATGTTAATACCTCTGTCCCGAAATATAAGGGATTTTGGTATGCGACTTAATAAATGTGCATGGACCTTGTTACTACATCAGATTATATCATTGGCACATGCTAACTTTGGAGAAATTACACCCCTTGTAAAGCCAAAAATATGTTCACCAAATATGTATTTCAGAAGTAATTCAAAGAAATGCATTAAAACAACATAACGTACCAATGGCAACGGTAGCATTTTGTGATGCAATAATTCCGTAATACCTTCTGGCAACAAAGCCATCTGAAAGAGATGTGGAGTTAAATGATAATACTGCAGCTTGCACTATGCTAGAATAAACATGCACAGCACTAGATATTCAAGAATTTAATTGTATTTGCGAACCAGATTACCTCATTTCGATCACCAGTGTAATTGTCTCCTATCAGTTGACTAAGGTATTCTTCAAACTCTTCATCAGGAGCCTATGAAAATTCAAATTAAACATGTTGATAACAGTAAATGGCATTTGTGATTTGTTCAGTCAAATTCATGAAGCAACCATTTAGTGTATGACAACAGTTCAAGGCTATGCACATTTTTCCAACAGAACCAGCAAGAGAGCTGAAAGCTATGCACACTGAGGACTTTCTATATTTCAAAGGGCTGTCATAAGAATATTTTCATGTGAAACTGCAACCAATAGAGCAACAAGCTTTCGATTTGTCATCTGAAATAAGAAATGCAGCAAATGCACAAAACAATACTAGGAACAATGATTTTATACAAAGACAAACATGAATGACCACTCTAATAAGACATTGCTGAATTACTTGTATCACTAGAAGCAAGATGATTTTAGAATAAAGGAACACTGAAGAGCAGAAGCTCAGCACAAAGTAGAGGCACAGCAGAACTAGAGCAGAAGGATAAAGGTGATCATGACTAACAATTAGGCTGGGAACCTACTATAACAAATCCTACAGCGAAAAGTTTCAATGAACGCACCAGACGAACTCCAAATGCTTTTGCAACGCCAGCCAGCGAAATGTCTGAATGTAAAGGCCCAAGTCCTCCAACAAGAAACACCTGAAATACAATGTGAATATCATCACACACATTATTAATCCAAAAACTTCATAAAATGAAAAGGTCGATAAGCTAACCATGTCATCTGTAGATTTGCAACGTTCAACTTCTTCAGCAACAGAATCAATCTGCATAACAATAATTTCTGTTAGATATTATGTGCCAGAAAACTGGCAAAGTTGGCAAGTAGATTGCATAGTTCACAGCAGTTGCAAGTAGGCTGCAAGCTCCCACATGGAGCCTATAGGACATACAACTATTTCGATTCATTTAACTTATCTTACTTCATTGGAAACAACTGCTACATGAGAAACTCGCCAGCCAATTGCATGAAGCTTCTTGCACAAGCCTGCACCTAGCTTATCCTCAACTGTGCCGAACCTGAAATACCACGCACGTGTATCAATAATTGTATAAAACAACTGTCAATGAATCATTTACACAAAAAACAATAAACCAGAGTATCAGCACGGCAACACCAAATTCTCCAACAGTAGTAAAGAAAAATCCTTATATTTTGAGCTTTGGAATGCCTGGTTGCACTTTGAATTGACTTTTAATGATTCTGAACACAGACAAATGAGTCAATGAAACTCATTCCACTATCATTTTCCCCCCTAGAAATGAAGATGTTTCTACTGTATCAAATAGCGGGAGAGGTATAAACACAGCTGATCGCATTTGCTCTTCAGTGTCCAAACTACTGATAAAATATACTTGTTGCATTTATCCAAAAGGCAATGCCAAAAAATAAACTAAATTAGTGTAAATGTACCATAAATTTCAGAGAGAGAGAGAGAGAGAGAGAGAGGCCAGTGTGCCAGTAGCCCAGTACTGCCAAAGAAAAGGCTGTTGGAACTGCAAGAACCTTGGAATGACAGAATTATATCTGTAGAGGCAAATTGGAAAGATTACTCACAATATTTCATCACCAACTACAATGATCGACGCTGAGCGTGAGATCGTCTGTTCCACCTCAGTACTGTTTGTACCATTGCTTGAAACAGAACTAATATTCTTCTTTGTTCTGCCAGCTCTTTCAAGCCTTCCGTCTGATAACATGTATGCTGGCCTAAAACTTTTCCCAGTTGTTGAATCACAAAGAAGCGCATTGGGAACAGTATCATATATGCTTCCAATGGAAGTATACCTAGAAACAACACAAGTACATGACATTGTAAGATAAACTAGAAAGTTTATATGGAAATCTATATAGCACTCTCAAGTGGCTTAAATTACAAGGTAACTTTACATAGCTGATGTTCCACAAGCCATTTTATATAAATTTATTTAAAGTAACAACATGATAAACGGCATTTTTTGACCCCATAGGTATCGATACGCTAAACATTCAACAGAAGTTATGCATACAGACCATTAAAATTTTGGATTATGAACATGAAAAGGAAACCTACCCTTGATCATAGAGGCTGCAGTATTTCACCTTACAGGTCAACAGGAAAGACCAAACATCCCTGAGGCAGAAGTATAGTGTTCCTTAGCACATGAATATTAGCAGACTAGGAGGCACCTTTTGATTGATTTACATGATCAGGAGGAAAACCTGTATGACCAGTCCAATATAGGATTGACCCTCATGAAAGGAGGCCAGCCAGGTGAACTAGGCGAGAACTGCTCTTGACCAACCTATAATCCCAAACTGTAGTAAGTAATAGGTTTATCGGGAGTCTAGGGACATCAATAAGTGAAAGGTCTATGGGCATGAGGATTGGACATAACAAGTCTATCGAGATTTGAAGAGCAACTAAACAAGGGAACAAGAAAATTACTGCATTTGGATCGCCAATTCTAGTACCAATAAAAATTGCTTTAGTAGGCCTCTCTTTCAATAGGCCTTCTAGGCCAGACTTAAAATCCGAGCGGATAGTTTCCAGTGGCAAACCATAACTGTGGAGAACGGAGGACAAAGAATATTTCATTTAACTTCTCAAGGTTAGCAAATAAACAAAGACAACGAATCTTAGTGATTTCTTACGTTGAGACAGTTTCATAAGTGAATGAGTTGATTTCAGGGAAAGCACAAGGGCTCTCAAAATAGATGGTGCGCACAGGACAGTTTTGGATAGTATTCATTTCGACTTCACCATCAGAGCTTGATTTGTGGAGGTAGTAGCCAGCCCGAAGTAAATGCAACAGAACCTATTGATATATAGCATTCATATCTTGTTAAACTTGCTAATAGAAAAAACCGTCACTTAACATACAGAAGAAAAATGACAAGCAAGAGAGATTATAAAGATATTACTGTTGAATCCTTCCCACCATTAAAGCTGAAGGCAACTTCCTCAAACCTGGAAAATGAAATTTCTGAGAATGAGATTTAGGATGTTCCTGTATTCAATGTATATATAAAATGAGAGCATTCAAACCAACCCCACCCTCTATTGAATATCCATCCTGGACAAGTGCAGAACCATTTAAAAAAACTAAATAGGGAAATTAAAGGATAGGGTGCCAAAAAGAACTGTCAATATGCATTTGGGGAACATCTGCCTTGTGCCTTATTCACATAATCCAGGTATAACTGGTTGAAGTTTTCAAAGAAGACTAAGTCCCCGTGCACTGCAATGATATTTAAACTCCCCACCAGCCATTACTTATATCATGTTCAACACAACTGGACATCCCACATTCCAGTTATTCAAGAAGTTTGCATGATTAGAATTATAATTCATCATTCACTGAAAAAATCTTTAGTGTCCTACAGAAATGTCATTATGACCTTACCAAAATATACTCTGCATTGGAACAGCATGAAGATTTGGATCAGAACATGTACACCATCATACTTACAAGCTAAAAACATAGCAGTCACACAACCCAGTTGGCATGATAAATGTGCCTGATAGTATAGTTAGGAGAAAAGGTAAAAATTTGACTCCAACTATGTGATTTCAAACACTCGACATCCTCAAGAAATTGGTAGGCAGTGTTGCATTTTCACTCGAATTACATATTCTGAGCCGCTTGAGATATAGAAACTGAAACTAAAATTGAAAGTTTATGAATCGATGCATGTAATTTTGGAAGCTACTTTAAAGCATGCAGGCACATACTTTCATCACAGACTCAGATTATTTAGCTCAAAATTTGCAGATGTATTCCTCTGCAAAGGAAATGTGGAAACACTGGATGGACCTTTCCCTGGTTTAAGATGACGTGACAAACAAGCATCATGGGTTTTCACTCCCCGTATGGATGTAGTTTGATTTAGAATCTCCTTTCTCATCCAAAGAAACTCGATTTTAAGTTAAGTGTTGACTAAAAAAGGAAACAGTTTACAACTCACAAAATGGATGTATAAATATTTAGCTCATCAGAACTGGCATAAGAACAGCCGATACAACCTGACTAGCCAACAACGAAAACAATGTACCTACTCCCGTTGTATCCTGGACAGCATTCAAGACACAGGTACTTTAATCCGTGGTCCGAATCAACTGAAAATACAGTTCGACAGAGCAATCCAGCCGAAATCCAATCGATCGAGACTAGACGATTGTTGCGGCAGCCAATCCAAATAGTCTAGACCGTCCTAAAAAATTGCTACTAGTTGATGTTCAGAAACTATAACAGCATACACCATTGCACAAAGGGGATTAAGAAATCGAACAGGCAAATAGGGATGAATTTTCTGTTGGTAAGGACACACAAATTTAGAATGCATATCGGGATTAAACAGCTGCAGCGACCTGCAGTTTGGGATCTAAACCCCCAAGTCGATATTCCTCTCTCCAATCTGTGATTACCACATTTATCCCCAAATCCATCCGAGCTGGATGAACCAGCCAAACCAACCCACTCGTTACGGGGCACGCGCCAAACCAAACCCGACCCGATCGCGGAAAGCAGCAACCCCAACAAATATCGCGTTGATCATCATCGAGCTAAGACACCACCACCACCATCACCGCTACCACACGAATCTAGTGAGAGGGGAGGGGGGGAGGAGGGGGGGGGCGCGTACGGGTAGAGCGCGAAGGCTCGCTGCACGACGTAGACGGCGTTGTCGTACTTGGTCCGCAGGCGGCGGTCGCTGCTCCCCCGCACCGCCCGGTCGATCTCCATCCCCACACCTTACTCCTCCCTCCTCCTCCTCCTCCTCCTCCGGAGAGATGCCGAGCCGGCGCGGAGAAACGACCAGGGGGGGCCTCTCCACCGCAGAGGAACACGGCCGCCGCCGCGGCGGAGGGGAGGGTGGAGAGCTCCGCCGCCTTCTACCGCCGCCGCCGCGGCGCTGCGTAGGAGGAGCGGGGAGGGGAGGGGAGGCTTGGCCTGGCCTCCACAAAGGGAAGGGAAGGGGAGGAGGGGAGTGGATAGACGGGGGCACGTTTGCGGATGCTGTTTCTGCGTCGGG
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| CDS seq | ATGGAGATCGACCGGGCGGTGCGGGGGAGCAGCGACCGCCGCCTGCGGACCAAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCGTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACAGTTCTGTTGCATTTACTTCGGGCTGGCTACTACCTCCACAAATCAAGCTCTGATGGTGAAGTCGAAATGAATACTATCCAAAACTGTCCTGTGCGCACCATCTATTTTGAGAGCCCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAAGGCCTATTGAAAGAGAGGCCTACTAAAGCAATTTTTATTGGTTGGTCAAGAGCAGTTCTCGCCTAG
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| Protein seq | MEIDRAVRGSSDRRLRTKYDNAVYVVQRAFALYPFEEVAFSFNGGKDSTVLLHLLRAGYYLHKSSSDGEVEMNTIQNCPVRTIYFESPCAFPEINSFTYETVSTYGLPLETIRSDFKSGLEGLLKERPTKAIFIGWSRAVLA |
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| Function | Probable FAD synthase [UniProtKB/Swiss-Prot:Q22017] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0259600 | Os01t0259600-01 | Chr01 | 8701299 | 8708612 | - | irgsp1_rep | ||
| CDS seq | ATGGAGATCGACCGGGCGGTGCGGGGGAGCAGCGACCGCCGCCTGCGGACCAAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCGTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACAGTTCTGTTGCATTTACTTCGGGCTGGCTACTACCTCCACAAATCAAGCTCTGATGGTGAAGTCGAAATGAATACTATCCAAAACTGTCCTGTGCGCACCATCTATTTTGAGAGCCCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAAGGCCTATTGAAAGAGAGGCCTACTAAAGCAATTTTTATTGGTTGGTCAAGAGCAGTTCTCGCCTAG
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| Protein seq | MEIDRAVRGSSDRRLRTKYDNAVYVVQRAFALYPFEEVAFSFNGGKDSTVLLHLLRAGYYLHKSSSDGEVEMNTIQNCPVRTIYFESPCAFPEINSFTYETVSTYGLPLETIRSDFKSGLEGLLKERPTKAIFIGWSRAVLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0259600 | RBH | 7.705953 | 7.328539 | 6.009150 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15490 | RBH | 5.251653 | 4.939103 | 1.529207 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011200 | RBH | 1.996513 | 13.232082 | 9.782484 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010850 | RBH | 1.649767 | 2.340052 | 4.522655 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011210 | RBH | 5.698211 | 5.596111 | 15.889427 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010710 | RBH | 0.649250 | 0.304098 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010760 | RBH | 29.164822 | 8.900367 | 22.302032 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0145400 | RBH | 21.5628875 | 20.0488575 | 22.7890845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010760 | RBH | 1.504322 | 0.910488 | 3.004394 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0143900 | RBH | 24.347875 | 19.392405 | 19.947779 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010730 | RBH | 0.963225 | 0.229047 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010790 | RBH | 3.059006 | 9.222750 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010730 | RBH | 31.365145 | 36.102123 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010880 | RBH | 3.484175 | 1.441774 | 2.890740 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010720 | RBH | 2.595610 | 11.617883 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010870 | RBH | 2.744947 | 4.385020 | 5.118841 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010730 | RBH | 12.408762 | 11.357325 | 14.463233 |
