Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0257400 | OGI:01027000 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:8593792-8599448 | ||||||||
| Gene Symbol | C3H5, OsC3H5 | ||||||||||
| DNA seq | GCAGGGTTCAAACATAAGTCGGATGCAATCGACTAAATGAGCAAAATGATGATGCAGCAAGTTAGCTTGGGGCGATTCAGATGAGGGTTTCCAAGTGTGTGATTACAGTTTCTTGATCCCAGTATATATATGAATATGCATATAGCTGAACTCGAGATTGCATATATATATGATGATTAAAAATAAACAGAGATTTGGGCAAGAGCGACCAAACCAAATAACTTTCTGACATGAAACTCTCTGCAGTGGTGCACACTCAACGGCCTGCTCCGCCGATAAAATTATGTACCGAGGAGATGGATTCGAAGCTCTGAATCATAGTGCAATGACAGTCAAACAGTTAACTGGACTTCAGAATGACCCCTGTTCCATTTCAGACATGAAGAGATAAACGGCAAGTGAATGAGCTTGCCACTGCCTATCTATCTATGATGAATTTATTCAGGTGGCAAGATTACCACCTTGGCCATGCCTTTGTCAAAGTCAGTTGAAGCCTTATTCACAATGAGTGGGGGTCCAAGTGAACTGATGCTGAGAGGGTAAGTCGAACTGACGCAAAAAAAGGAGACGAGATCTCATTCACCATATGCCAAAAAAGTCCCGAGAAGCTTGCTGAAGGTGGTTAGAGCTCTCCACCATGAGTTGTAACCATGCCACCAGCTCCAGAAGTTTGAGGTCGGATAAGCATGTGTGGAGCGTACGCTTTTAACATTGCTCCAGCAGGTCCGCATGTAGTACCAGGTGACGCTGACTGGTTGGCTGAAAACTCTTTGGTTAGAAGGTATTCTGGCCGCAAATCAGAAGAAGATGAAGGTGGAGCCACAGGAGCAACAGCGTAATTGAGGGGATAGGGAGCAATAGGCAAATCAGTAATCGATGACGCTGAAGGGCTATAGCTTAGAGTACCCATTGGGTGATCAAACTTGCAAGTCGGACCAAATTTGCAAAATCCATGCTGTGTATAGTAAGCACATGGTTGGCTACCCTGCAAATCAAGGAAAACTTCATATGAATAATTGAACAAGTGCAAACAGAAACAAATAGAAGTGTAATGTATCATCCATATACAAGAATAGCTTGTGTTCGTAAGACATGGTATTAATGTCCATATTTTTATCAGAAGGAACTCAGTCACACTAGATTCTATTTCGACTGTCATCGCTTAAAGAGACAACAAAATGCTACAGGTAGTTCCAGGAAAATATATCGCAAATCGCAAAAAAAAAAAGGAAAAAAGAAAGATACCACTGCAACCATTGCAAGGTTGAACATAGAACTAAATGAAATTTACTAGCTACTGACAGCACAATATGCTGTCACAACAAAGGGGGGCATCAACTGTTGGTCAGATTATTAATAACTTCCAGTCTTCTGCCCTTCTCTGAGACTGTGATGCCATGCAGAAAAGAATTTTATCTTCTGTGTTCTATAAAAAGTTTATTTCCTTAGCAATAATAGATACATAAAGGCAAATATGTAGAGTACCACATAACAGAAAATCCTACATTTTTCAAGTTCTACCATTTGTCTCATACTAGCTACTACCATTTTTCAGCCTGCAGTAGAGGACATAAATGTGCAAGCAAACAAGCAAGCACTCATAAATTGGTACAAAATATTAAACTGTGAGTAATCAAGGGTATTTCATTTTGAAAAGAAACAAGAGAACAGAACACATATTAGGAGATTGACTCCAAATAATGTTTTTTAAAAAAGGTCTACAAAGCCACGTACAAGGCCGACTTCATGGAACCGGTGCCCCAACCTTGCACCGCTTAAGCCGCATAAGCATCCGATTATGCTGCATAAGCGCTACAAAGTGGGTTGACAGCACGAAACCGCACACCACTTTTCAAAACATTGACTCCAATAAACATCAAAAGGAACAAAAGGGCGTTGCCCAACAAAGATAATGCCATTTAAACATCGTTAAATACAAAAACATGAGAGAATTATATATTCCATTAACAACTAATATATCACTACTTTTTAACAGTATACTTTAAATTGCAACCCGGAATGATTTAAAAGAACGCAATGGATCACATTTGCATTTGGTACTGTTCAGGAGTTCCTGCCACCTAACATTATTAATTATTTATGTGTCGATGCGGGGAAACTGTAAAACATTCAACTCAAATGCAATTTACAGTTGACATTGAATTTCAAGCAGAGCCAAGTAAGTCACACAGGATCAGTAAATAAAAGCTAATGCAGTAAATGAACAGTTTTTTAAAAATGTGAAGGTGGCTTGGCTTCATCACTGTTTCAGCCAAAAAAAAGGAAACATACAACAACGTAGGTTCTTCTATGGCAGAACTTTACTAGATGCAACAGTTGTAGTTTTGGCATAAGAATCTCCAAAGTTTCTAGGCTTCCATGAATAGGCAACTAGACTAAACTACGGGTGTGTTCGGCACTCTATTTTCCCAACTCTCCCCTCTTGTTTTCCGCACACACGCTCTTCAAACTGCTAAACGGTGTGTTTTTTGCAAAAAGTTTCTATACGAAAGTTGCTTAAAAAATCATATTGATCCATTTTACTTAATTAATCACGCGCTAATGGACCGGTCTGTTTTCCGTGCGTACTGTTCCTGTTGGGAACCGGCTGGAACAACCACAGCCTACATGTGTACACCAAAACTCACCCGTCAATTTGGTTCTCTCAATACAATAAACTATATGGCAAACTTATCTGGGACAACATATCAAATACTAATCCAGACTCAAGCGATATACATTTGGACTGACTATCCTGGCAACAGCGTGCTACACATAGTTTAAGCATATAAAAGCAGATATGTGTTGGAGCTACTCACCGGCCGAAGAGGAAGACCAAGAGGACTCAGCATACAGTTAGACTTAGGTGTATTCAAATACTGAGGATGATGATATTTGCATGCAGATCCAAATTTACAACTCCCTGTCTTCAGATAATACTGGCATTCAGGTTGCCCAGGTCGCGCAGGAAAGGCAGGTTCTTGTTTACTGCTACTTGAAGGCATGGTTGAAGAAGATAACGGTGCATACTGACTGCCATAAGTGACTGCAGCAGAAGGCCCTTGGTGCGATAAGCCATAAAACGGCCCTGCTTGAACAGTTTGATGCCCCCCAGCTGACGCAACTTGGTTCACAGGTGACTAAGAACATAAAACATAGTAAAGAGGTCAATACAGCTTTTTTTTTTCTTTTTCTGACACTTACATCAGCATTATTTGTAGCACAAAATTAAGAAGTCATCCTGAATTGTTCTTACAACAAAGTATGAATCACGTTAAATTTTCTGGGTCACTCTGTAGCCAATTCTCTTACCAGCCAATTCTCTTATTTTATTGTGATGACTATAAATGTTCAAAGTACATCCTTAATAAGAAAAAATAAATTTCTTTCTAGATAGTTTGTACTAGATTAGAAGATCTATTTAATAATTTACTAGTCATATGCCCCCTGTGTCGCAATGGGATCTAAGAAACATGGTTTAGTTTGATCGTAACATAGGTGGCCCTGTTTTTTCTCGGTCCTTTTCTACAACGTTTTTTTATAGGTGGGGATGGAAGCGGTTTTATAGGGAATGGTACGTTTTTTTTATGTGGAGGGTGGGATAGGGAAGGAAAGGTAAACGATTGTGCTTTTAAAGTAGTAGAGATAATAATAACACCCTTGCTCGATGATCCACTACATGTGGTACAAAGAAGAAAATGATGACAAACTTACAATGTAAGGGTTCCATCCCTGCATTGGTACGACTGTGGACGGAAGCATCATTGGTGGATATGAGCCTGATAAAAATGATCCTGGCAAAACAGGAGGCCTCCCCATTTGCCAGCCAGCAAGATGTTGATATGGATGAGAGGAAGAGATAGGCTGAGGCTGAACTGGTGGATACATGTTAGGTGTCTCTGAAACTCCACCAATTTCTGGGTGATGGAATTTACATGTAGATCCAAATTTGCAATGGCCAGTTTTGACATAGTAGGTACAATCTTTCTCACCCTGCACATAAGAAATTTCATCAGAAAATGAAAAAGGCAGGCCACTACTTTAATAAGAATTGATCGAATGAATTATCTCACTGAGCGTAGAGGGTATCCACTGGAATTTAACATGACTGCTTGCACAGAGCCTTCCCTTGGGTGATCATACTTGCAATTAGAGCCAAACTTACAAGTTCCATTCTTCATATAGTACTGCATTTTTTATCACAAAATGTTAACCCGAAGAGTATCCAGCACATGACACACACAAAAAAAAAAATCATCTGTAGCCTAAATAGGTTGCCCACTTCTATAGGCACATTTTTTTGGGTTTGATATGATCATATGAGTGAGAGCTTGCACAAAATGAGAATCAGATAAATTACCTCACAAACTGGTTGCCCCGGCCGTTCTGGATACTCTGCCGAATGTGTGGTCTTCCCACCTCCATTTAACTAATAAACAAATAACAATATGAATGTTTAAATCAAAAGCAGGATAAAATACCTCGATTTCAATCCATTGTCATGAATTCACAATCATTACACTCTACCTAAGGCTCTAATCTTTACCACCAGTTCAAAGCACATGGTCCATCTACTTGATCCATAAGCAAAACATAGATTAAAAAAGAAAAGGGGAAGCGTTTGCCAACAGAAAAAAAAAGGACCAGACAAGTGGCTAGGCCTGCATGTGGAGCTCAGAATTGTCCACATCAACCATAAGACCGAGACACCAAACTAATCAAGCAAACCATCGCTACCAGCAAAGGCGCAATCAACTTTCACTTCTATGCTCACAAGATAAGATCCCACAGGCCATAAGTAGAATTAATTCTCGGCGAGAGGTTTCAGCTTGAAGCCCCCCACCTCAAAATCAACCGGACGTAATCCAATAGGGCGGTCATTGTCACCGTAGCTAAAGTCAGGAGGTGAAAAAAAAAAAAAGAGGAGTAGAGCAGCGAGAGGGGGAATTGGTGCTCACCACTGCTGCGGCGGCGCGATCGCGCGGGTGGTTGTAGCGGCAGTTCTCCCCGTAGCCGCAAGCCCCCGTGCGGAGGTAGTAGACGCAGTCCGCCTCCCCCGGCCGCTCCGGCAGCCTCCCTGCCGCCACCGCCTCCCCTCCGCCACCCCCGCCGCCGCCCAGCCCCATCCTCCACATCGACTCTGCAGCAAACAAGCACAAAAACCTCACAACGCCGCACACATTCGAGCTCGAGCACACGAAGATCCAAAACCCTAGCACCCCCCCAAACCCAAACCCCAACCAAAACCGCAAGGGCACGGGGTTTGGTCGGGAATTCCGCTTCCGTACCTTCGAGCCCGGTGTCGGTGCTGCCTCCACCTCCTCCTCCTCCTCCCCCCTCCGCCGCCGCGTACGGCTCCATCACCACCACCACCCCAAACCTCTCCGCCCTCCCCCCGCCGCCGCTCCTCCCGCGACCGGCGATCGGAGACAGAATCGGAGGCGAAATTGGAGGCCCGCCTCCTCTTCCCTCCCCACCAAAATCTCGGCGTGGCTTGCTCCTCCTCCTCCTCGTCGCGGCCGCCGTACGGTCGCCTCGAGTCGCGTGGCTTTCTCCTCTCCTCTCCGCGTGAGTGGGACAAGGAGGCGGAGAAACGGTGGTGGAGTAGGCGCCAAGGGGAAAGTGGCAGAGAAGGGAAAGGAAAGGAAAGGAAAGCG
More
|
||||||||||
| CDS seq | ATGGAGCCGTACGCGGCGGCGGAGGGGGGAGGAGGAGGAGGAGGTGGAGGCAGCACCGACACCGGGCTCGAAGAGTCGATGTGGAGGATGGGGCTGGGCGGCGGCGGGGGTGGCGGAGGGGAGGCGGTGGCGGCAGGGAGGCTGCCGGAGCGGCCGGGGGAGGCGGACTGCGTCTACTACCTCCGCACGGGGGCTTGCGGCTACGGGGAGAACTGCCGCTACAACCACCCGCGCGATCGCGCCGCCGCAGCAGTGTTAAATGGAGGTGGGAAGACCACACATTCGGCAGAGTATCCAGAACGGCCGGGGCAACCAGTTTGTGAGTACTATATGAAGAATGGAACTTGTAAGTTTGGCTCTAATTGCAAGTATGATCACCCAAGGGAAGGCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGATCTACATGTAAATTCCATCACCCAGAAATTGGTGGAGTTTCAGAGACACCTAACATGTATCCACCAGTTCAGCCTCAGCCTATCTCTTCCTCTCATCCATATCAACATCTTGCTGGCTGGCAAATGGGGAGGCCTCCTGTTTTGCCAGGATCATTTTTATCAGGCTCATATCCACCAATGATGCTTCCGTCCACAGTCGTACCAATGCAGGGATGGAACCCTTACATTTCACCTGTGAACCAAGTTGCGTCAGCTGGGGGGCATCAAACTGTTCAAGCAGGGCCGTTTTATGGCTTATCGCACCAAGGGCCTTCTGCTGCAGTCACTTATGGCAGTCAGTATGCACCGTTATCTTCTTCAACCATGCCTTCAAGTAGCAGTAAACAAGAACCTGCCTTTCCTGCGCGACCTGGGCAACCTGAATGCCAGTATTATCTGAAGACAGGGAGTTGTAAATTTGGATCTGCATGCAAATATCATCATCCTCAGTATTTGAATACACCTAAGTCTAACTGTATGCTGAGTCCTCTTGGTCTTCCTCTTCGGCCGGGTAGCCAACCATGTGCTTACTATACACAGCATGGATTTTGCAAATTTGGTCCGACTTGCAAGTTTGATCACCCAATGGGTACTCTAAGCTATAGCCCTTCAGCGTCATCGATTACTGATTTGCCTATTGCTCCCTATCCCCTCAATTACGCTGTTGCTCCTGTGGCTCCACCTTCATCTTCTTCTGATTTGCGGCCAGAATACCTTCTAACCAAAGAGTTTTCAGCCAACCAGTCAGCGTCACCTGGTACTACATGCGGACCTGCTGGAGCAATGTTAAAAGCGTACGCTCCACACATGCTTATCCGACCTCAAACTTCTGGAGCTGGTGGCATGGTTACAACTCATGGTGGAGAGCTCTAA
More
|
||||||||||
| Protein seq | MEPYAAAEGGGGGGGGGSTDTGLEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTKEFSANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTHGGEL |
||||||||||
| Function | Zinc finger CCCH domain-containing protein 5 [UniProtKB/Swiss-Prot:Q5NAV3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0257400 | Os01t0257400-01 | Chr01 | 8593792 | 8599448 | - | irgsp1_rep | ||
| CDS seq | ATGGAGCCGTACGCGGCGGCGGAGGGGGGAGGAGGAGGAGGAGGTGGAGGCAGCACCGACACCGGGCTCGAAGAGTCGATGTGGAGGATGGGGCTGGGCGGCGGCGGGGGTGGCGGAGGGGAGGCGGTGGCGGCAGGGAGGCTGCCGGAGCGGCCGGGGGAGGCGGACTGCGTCTACTACCTCCGCACGGGGGCTTGCGGCTACGGGGAGAACTGCCGCTACAACCACCCGCGCGATCGCGCCGCCGCAGCAGTGTTAAATGGAGGTGGGAAGACCACACATTCGGCAGAGTATCCAGAACGGCCGGGGCAACCAGTTTGTGAGTACTATATGAAGAATGGAACTTGTAAGTTTGGCTCTAATTGCAAGTATGATCACCCAAGGGAAGGCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGATCTACATGTAAATTCCATCACCCAGAAATTGGTGGAGTTTCAGAGACACCTAACATGTATCCACCAGTTCAGCCTCAGCCTATCTCTTCCTCTCATCCATATCAACATCTTGCTGGCTGGCAAATGGGGAGGCCTCCTGTTTTGCCAGGATCATTTTTATCAGGCTCATATCCACCAATGATGCTTCCGTCCACAGTCGTACCAATGCAGGGATGGAACCCTTACATTTCACCTGTGAACCAAGTTGCGTCAGCTGGGGGGCATCAAACTGTTCAAGCAGGGCCGTTTTATGGCTTATCGCACCAAGGGCCTTCTGCTGCAGTCACTTATGGCAGTCAGTATGCACCGTTATCTTCTTCAACCATGCCTTCAAGTAGCAGTAAACAAGAACCTGCCTTTCCTGCGCGACCTGGGCAACCTGAATGCCAGTATTATCTGAAGACAGGGAGTTGTAAATTTGGATCTGCATGCAAATATCATCATCCTCAGTATTTGAATACACCTAAGTCTAACTGTATGCTGAGTCCTCTTGGTCTTCCTCTTCGGCCGGGTAGCCAACCATGTGCTTACTATACACAGCATGGATTTTGCAAATTTGGTCCGACTTGCAAGTTTGATCACCCAATGGGTACTCTAAGCTATAGCCCTTCAGCGTCATCGATTACTGATTTGCCTATTGCTCCCTATCCCCTCAATTACGCTGTTGCTCCTGTGGCTCCACCTTCATCTTCTTCTGATTTGCGGCCAGAATACCTTCTAACCAAAGAGTTTTCAGCCAACCAGTCAGCGTCACCTGGTACTACATGCGGACCTGCTGGAGCAATGTTAAAAGCGTACGCTCCACACATGCTTATCCGACCTCAAACTTCTGGAGCTGGTGGCATGGTTACAACTCATGGTGGAGAGCTCTAA
More
|
|||||||
| Protein seq | MEPYAAAEGGGGGGGGGSTDTGLEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTKEFSANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTHGGEL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0257400 | RBH | 0.282201 | 0.441276 | 4.264818 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15350 | RBH | 0.190510 | 0.296284 | 1.098014 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0258700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011100 | RBH | 0.551762 | 16.920424 | 7.384951 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010760 | RBH | 0.109693 | 2.066856 | 1.709236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011110 | RBH | 0.363213 | 14.024504 | 10.406935 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010610 | RBH | 0.061402 | 0.302923 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010660 | RBH | 0.684700 | 9.351636 | 16.758614 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0143800 | RBH | 3.976072 | 19.683811 | 12.446911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010660 | RBH | 0.221049 | 0.897793 | 1.141453 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0142300 | RBH | 5.9574645 | 16.9081485 | 18.3980415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010630 | RBH | 0.128361 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010700 | RBH | 0.156500 | 6.506426 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010630 | RBH | 1.311588 | 10.873301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010780 | RBH | 0.660924 | 0.504375 | 2.002021 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010640 | RBH | 0.151784 | 6.001996 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010790 | RBH | 0.118852 | 4.682092 | 3.219632 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010660 | RBH | 0.0 | 11.656631 | 6.449841 |
