Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0253000 | OGI:01026260 | 5/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:8364116-8365711 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCATTAATTAACACAAAAGAAAAACTCGGAACTAATCAAACTTTGGCATTAATTAGAACTAATTTCCTCGAAAGAAATAAAAAAAAAGTCGGAACTAATTAAACTTTGGATCTATGTGCATGGTTCACTTGTGGTAGTGCCGTAGTGGTGTCACTGTCACCGGCCGGTGGGCTGGACGAGCTGCGAGAAGGTGGCGCGCTCCGCGACGACGTCGTCGGGCTCCAAGACAACGTCGACGCACGGCTCGTGCGGGTGCGACGTGGACGACGTGGCCAGCGTGTTGATGCTGGCCGTGCTCCCGTCGTCGAGGTGGCTGCTGCTGCCGGCGGCGGCGTCGAGCGCGGGGACGGGGCGGCCGGCGGCGGCGTCGAACGCGTCCTGGAAGTGCATCGCGCTCTCGAGGTTCCAGAGCACGTCGCCCATGGTGGGGCGCTCGGTGCCGTTCTCGGAGAGGCACTTCTCCGCCGTGTCGGCGAACTTGGCGAGGCACTCGGGCGCGATCTGGTCCCTGATCGCCGGGTCGACGACGTCCGGCAGCGCGCCGCCGCGCTTGCAGGCGAGCGCGTAGTCGGCGAGGCTGACCTGGTCGCGCGGCAGCGCCGGGTCGAGCGCCGGGCGCGCCATGAGCACCTCGAACAGCACGACGCCGAAGGAGTAGACGTCGGACTTGTCGGTGAGCTGCTGCCGGCGGTAGTACTCCGGGTCGAGGTAGCCGAAGCTGCCCTTGACGACGGTGCTGACGTGCGACTGGTTGAGCGTGGTGGGGCCGGACTTGGAGAGGCCGAAGTCGGAGACCTTGGCGACCCAGTTGTCGTCGACGAGGATGTTGGTGGTCTTGACGTCGCGGTGGATGATGGTGTACTTGGCGCCGGTGTGGAGGTAGTGGAGGCCGCGGGCGGCGCCGATGCAGATGTCGAGGCGGTGGCGCCACGACAGCGTGGGCTTGCCGCCGTTGTGGTAGAGGTGCTCGCGCAGGGTGCCGTGCTCCATGTAGTCGTAGACGAGCACCATCTCGCCGTCCTCCTCGCAGAAGCCGATGAGGGAGACGAGGTGGCGGTGGCGGAGCTTGGAGAGCATCTCCACCTCCGTCTGGAACTCGGTTATGCCTTGCTCCGACGACGGGTTGGACCGCTTCACCGCCACCTTCACGTCGCCGTCCACCACGCCGCGGTACACCACGCCGAACCCGCCCACGCCGATGGCCAGGTCGTTGGAGAAGTTCTTGGTCGCCGCCTTGATCTCCGCGAACGAGAAGTGGCGGCACATGCCGGCGATGTTCGCCGTGATGTGCCCCGACGACTTGCCGCTGGTGTGGGAGTGGTACAGCGGCAGCCACGCGGAGGTGTGCGAGTCGGCGCCGCCGCCGCCCAGCTTCTTGCTCCTCTTGTTGCTGTACACCACCACGCAGATGGCCGCCACGATCCCGGCCGCCGCCGCGCCGCCCGCCGTGCCGCCCATCACCGACGCCATGTTGGCCGGGTTGTCGGTGGAGAACTCCGGCGGCCCGCCCCAGCCGAGCTCCTTCTCCGCGAGCAGCTTGTACGGGACGGGGTCCGGCGACGCCAGGCTGCCGCCGGTGTTGTTCACCTTGAACAC
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| CDS seq | ATGGCGTCGGTGATGGGCGGCACGGCGGGCGGCGCGGCGGCGGCCGGGATCGTGGCGGCCATCTGCGTGGTGGTGTACAGCAACAAGAGGAGCAAGAAGCTGGGCGGCGGCGGCGCCGACTCGCACACCTCCGCGTGGCTGCCGCTGTACCACTCCCACACCAGCGGCAAGTCGTCGGGGCACATCACGGCGAACATCGCCGGCATGTGCCGCCACTTCTCGTTCGCGGAGATCAAGGCGGCGACCAAGAACTTCTCCAACGACCTGGCCATCGGCGTGGGCGGGTTCGGCGTGGTGTACCGCGGCGTGGTGGACGGCGACGTGAAGGTGGCGGTGAAGCGGTCCAACCCGTCGTCGGAGCAAGGCATAACCGAGTTCCAGACGGAGGTGGAGATGCTCTCCAAGCTCCGCCACCGCCACCTCGTCTCCCTCATCGGCTTCTGCGAGGAGGACGGCGAGATGGTGCTCGTCTACGACTACATGGAGCACGGCACCCTGCGCGAGCACCTCTACCACAACGGCGGCAAGCCCACGCTGTCGTGGCGCCACCGCCTCGACATCTGCATCGGCGCCGCCCGCGGCCTCCACTACCTCCACACCGGCGCCAAGTACACCATCATCCACCGCGACGTCAAGACCACCAACATCCTCGTCGACGACAACTGGGTCGCCAAGGTCTCCGACTTCGGCCTCTCCAAGTCCGGCCCCACCACGCTCAACCAGTCGCACGTCAGCACCGTCGTCAAGGGCAGCTTCGGCTACCTCGACCCGGAGTACTACCGCCGGCAGCAGCTCACCGACAAGTCCGACGTCTACTCCTTCGGCGTCGTGCTGTTCGAGGTGCTCATGGCGCGCCCGGCGCTCGACCCGGCGCTGCCGCGCGACCAGGTCAGCCTCGCCGACTACGCGCTCGCCTGCAAGCGCGGCGGCGCGCTGCCGGACGTCGTCGACCCGGCGATCAGGGACCAGATCGCGCCCGAGTGCCTCGCCAAGTTCGCCGACACGGCGGAGAAGTGCCTCTCCGAGAACGGCACCGAGCGCCCCACCATGGGCGACGTGCTCTGGAACCTCGAGAGCGCGATGCACTTCCAGGACGCGTTCGACGCCGCCGCCGGCCGCCCCGTCCCCGCGCTCGACGCCGCCGCCGGCAGCAGCAGCCACCTCGACGACGGGAGCACGGCCAGCATCAACACGCTGGCCACGTCGTCCACGTCGCACCCGCACGAGCCGTGCGTCGACGTTGTCTTGGAGCCCGACGACGTCGTCGCGGAGCGCGCCACCTTCTCGCAGCTCGTCCAGCCCACCGGCCGGTGA
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| Protein seq | MASVMGGTAGGAAAAGIVAAICVVVYSNKRSKKLGGGGADSHTSAWLPLYHSHTSGKSSGHITANIAGMCRHFSFAEIKAATKNFSNDLAIGVGGFGVVYRGVVDGDVKVAVKRSNPSSEQGITEFQTEVEMLSKLRHRHLVSLIGFCEEDGEMVLVYDYMEHGTLREHLYHNGGKPTLSWRHRLDICIGAARGLHYLHTGAKYTIIHRDVKTTNILVDDNWVAKVSDFGLSKSGPTTLNQSHVSTVVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLMARPALDPALPRDQVSLADYALACKRGGALPDVVDPAIRDQIAPECLAKFADTAEKCLSENGTERPTMGDVLWNLESAMHFQDAFDAAAGRPVPALDAAAGSSSHLDDGSTASINTLATSSTSHPHEPCVDVVLEPDDVVAERATFSQLVQPTGR |
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| Function | Receptor-like protein kinase ANXUR1 [UniProtKB/Swiss-Prot:Q9SR05] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0253000 | Os01t0253000-01 | Chr01 | 8364116 | 8365711 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTCGGTGATGGGCGGCACGGCGGGCGGCGCGGCGGCGGCCGGGATCGTGGCGGCCATCTGCGTGGTGGTGTACAGCAACAAGAGGAGCAAGAAGCTGGGCGGCGGCGGCGCCGACTCGCACACCTCCGCGTGGCTGCCGCTGTACCACTCCCACACCAGCGGCAAGTCGTCGGGGCACATCACGGCGAACATCGCCGGCATGTGCCGCCACTTCTCGTTCGCGGAGATCAAGGCGGCGACCAAGAACTTCTCCAACGACCTGGCCATCGGCGTGGGCGGGTTCGGCGTGGTGTACCGCGGCGTGGTGGACGGCGACGTGAAGGTGGCGGTGAAGCGGTCCAACCCGTCGTCGGAGCAAGGCATAACCGAGTTCCAGACGGAGGTGGAGATGCTCTCCAAGCTCCGCCACCGCCACCTCGTCTCCCTCATCGGCTTCTGCGAGGAGGACGGCGAGATGGTGCTCGTCTACGACTACATGGAGCACGGCACCCTGCGCGAGCACCTCTACCACAACGGCGGCAAGCCCACGCTGTCGTGGCGCCACCGCCTCGACATCTGCATCGGCGCCGCCCGCGGCCTCCACTACCTCCACACCGGCGCCAAGTACACCATCATCCACCGCGACGTCAAGACCACCAACATCCTCGTCGACGACAACTGGGTCGCCAAGGTCTCCGACTTCGGCCTCTCCAAGTCCGGCCCCACCACGCTCAACCAGTCGCACGTCAGCACCGTCGTCAAGGGCAGCTTCGGCTACCTCGACCCGGAGTACTACCGCCGGCAGCAGCTCACCGACAAGTCCGACGTCTACTCCTTCGGCGTCGTGCTGTTCGAGGTGCTCATGGCGCGCCCGGCGCTCGACCCGGCGCTGCCGCGCGACCAGGTCAGCCTCGCCGACTACGCGCTCGCCTGCAAGCGCGGCGGCGCGCTGCCGGACGTCGTCGACCCGGCGATCAGGGACCAGATCGCGCCCGAGTGCCTCGCCAAGTTCGCCGACACGGCGGAGAAGTGCCTCTCCGAGAACGGCACCGAGCGCCCCACCATGGGCGACGTGCTCTGGAACCTCGAGAGCGCGATGCACTTCCAGGACGCGTTCGACGCCGCCGCCGGCCGCCCCGTCCCCGCGCTCGACGCCGCCGCCGGCAGCAGCAGCCACCTCGACGACGGGAGCACGGCCAGCATCAACACGCTGGCCACGTCGTCCACGTCGCACCCGCACGAGCCGTGCGTCGACGTTGTCTTGGAGCCCGACGACGTCGTCGCGGAGCGCGCCACCTTCTCGCAGCTCGTCCAGCCCACCGGCCGGTGA
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| Protein seq | MASVMGGTAGGAAAAGIVAAICVVVYSNKRSKKLGGGGADSHTSAWLPLYHSHTSGKSSGHITANIAGMCRHFSFAEIKAATKNFSNDLAIGVGGFGVVYRGVVDGDVKVAVKRSNPSSEQGITEFQTEVEMLSKLRHRHLVSLIGFCEEDGEMVLVYDYMEHGTLREHLYHNGGKPTLSWRHRLDICIGAARGLHYLHTGAKYTIIHRDVKTTNILVDDNWVAKVSDFGLSKSGPTTLNQSHVSTVVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLMARPALDPALPRDQVSLADYALACKRGGALPDVVDPAIRDQIAPECLAKFADTAEKCLSENGTERPTMGDVLWNLESAMHFQDAFDAAAGRPVPALDAAAGSSSHLDDGSTASINTLATSSTSHPHEPCVDVVLEPDDVVAERATFSQLVQPTGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0253000 | RBH | 0.000000 | 0.000000 | 1.495530 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14926 | RBH | 0.0 | 0.0 | 0.277602 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0280700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035090 | SBH | 0.044693 | 16.873024 | 11.236882 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010440 | RBH | 0.000000 | 0.0 | 0.880052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035020 | SBH | 0.386018 | 23.628847 | 11.808557 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034360 | SBH | 0.075502 | 1.542884 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034100 | SBH | 5.635807 | 51.176380 | 16.585117 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0138800 | SBH | 6.509941 | 15.8177335 | 10.4159435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010340 | SBH | 0.155818 | 0.981515 | 1.220636 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0138400 | SBH | 7.627316 | 14.1028305 | 15.2912505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033990 | SBH | 0.143239 | 0.372497 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034050 | SBH | 0.041392 | 26.230326 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034300 | SBH | 2.951512 | 16.821091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034360 | SBH | 0.978133 | 2.956742 | 2.017004 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034200 | SBH | 0.074232 | 24.427515 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010420 | RBH | 0.0 | 0.0 | 0.246097 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010300 | SBH | 0.000000 | 3.054792 | 1.418796 |
