Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0247500 | OGI:01025530 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:8125672-8128014 | ||||||||
| Gene Symbol | RLCK27, OsRLCK27 | ||||||||||
| DNA seq | GGTACACAAATAATCTGCTCACTATCATGGCAGCTAGCAAAGTTTGCTTCCTGTACTTATACAATCTTTGGTAGCTCGATCGCCAGAAAACAATCGCCTTAAACATCGATCTGAGAACTGGATTGCGCAAAAACAACACTTGAGTGAAAAAAAAAAGTCTTCAACTAACTAAACTAAGGACCTACTATGTATATACTGTATGAACACATGTATACAGTACATGATATTCTGTACGTATACACGTGCTAATCAACCGATCATGCAGTAGTGTTCTTGGCTTGCTCCAGCAGCTTGACAACTTCAGCCATGGTTGGCCTGTTGCAGGGCTCAGACTCGAGGCACTTGTCTGCCACTTTGAACACCAGCTTCACCTCCTCCGCCGGGAACGACGACTCCAGCGCGCTGTCGACCGCGTGCTCCTCCCTCTTCTCCTCCATCGTCTCCTTCACCTGCACGTACACACCGATTACCCATGTTGGTATGTTACAAACTTAATTAATCACGTTATTATCTTGTTTTAATGATTCGTTGATTAGGCCCAATAGTAGTACGTTTGACAGATAATTAGTATACGCGTATTTAATTATTCATTGATCGTGCATGACTTTGTGGTTTGTAGTACCTGGTGATGATTGGTCACTGCTAATGAATGATCAGTCTCAGCAACAAAACACTGTAGATGATGTGTGTACGACATGAAATGAAATGGATGGAAAGCTTTTAAGTTCTGTTTGACACGGCTCTGGATCTAAAATCTTTTAAACTGGGTATTTTTAACTTCACAAATATATGAATTCGAGTATGTGATTACGTTGATAATATTTAGATAAAATCATTTTGTTTCATTTTAAATGAAATATAAGATTTTAAACTTTATAACTTAACAAACAAACTTTAAATCTAACGCGGATATAGAATCTGGAGCTGTGTGATCTTACCCAGGTCACTAGCCTCGTGCCGTTCTCAAGAAACGACTCGTCCGTCGGCCTCATCCCGGTGAGGAGCTCCAGCAGCACCACGCCGTAGCTGTACACGTCGCCCTTCGTCGTCGCCCTCCCGGTCTCGAAGTACTCTGGGACGCACACAACATGTTCGATCAAATGACTGACAGTGGTTCAGAGAAGCTGGTGATGAGGCGAGGTGAGGTGTGGTGGTCGGACGGAGACGGACCTGGGGCGAGGTAGCCGAAGGTGCCGGCGACGACGGTGGTGACGTGGCTATGGTTGGGCTTCATGAGCGTGGCGAGGCCGAAGTCGGAGACCCTGGCCTCCATGTTGTGGTCGAGGAGGATGTTGCTGGACTTGATGTCGCGGTGGATCACGTGCGGGATGCAGTCGTGGTGCAGGTACGCGAGCCCCCTCGCCACCCCCGCCGCGATCTTGTGCCTCGCCTCCCACCCCAGCGCCCTCCTCGTCTCCTCCTTCCCTGCAACCACATCAAGAACTCAGGATTTCCATGGACAAAATCGCCATAGCTGCTTCGAGTTCTGATGTGTATATGTACCGTGGAGGATGGTGTCGAGGCTGCCGTTGGGCATGAGCTCGTAGATGAGGAGGTTGAAGTGCGGGGCGGCGTAGTAGCCGCAGAGCGGGACGATGTTGCGGTGCTTGATGTCGCCCATGGTGTCCAGCTCGCGCTCGAACCCCCGGTCCATCTCGGCGCTGCCGCGGCTCAGCTTCTTCACCGCGAACGCCGCCTTCTCGCCGACGCTTAGCCTGTACACCGTGCCGTACCCGCCGGAGCCGATGATGTCCTTGTTCGAGAGCCCCATGATCATGGTCAGGAACGACTTGGGGCTCAGCGACTGCATCGCCGCCGACCTGAACATCACCATCTTGCCACCTACAGTACGTGATGATCAATTGATCATTCGCATCAACAGAGAAGAATTCAGCAAGAAAAACAAGTCAGAATTAATCTCTGTTTTTTTTTAACCTGTCAGGCTGTTCTCGATGATCCGTTTCTTGCGAGCCCACTTCTTGTAGAGCAGGAAGGAGATGAGCATCTTGGACACGATGAACAGGATAGAGCAGATTGTAATGTAGAGTGCAACCATGGTAGTATGCATCTTGCAATCCTGAAGAACCAAGCAGCAGCTGCAACTTTGAGCCCTTGATGACTATATCTATATGCAAAAAAAAACTATATTCCCCTTGAAGAATTCAGTGAACCCTGAAGTCTGAACCCAAGAAATGAACAAAAAATCAAGCTCTCCAAAAAGGGCAACAGAGAACAACAACAAAAGTCACTGCATGAGGCTGTATGAACGAGCTGTTCTCAGCTCGGAAGCAACAGAGATGAATGAGGAGGCCTTCTTCACTGCTGCATGGGCTCAGCTGCTTT
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| CDS seq | ATGCATACTACCATGGTTGCACTCTACATTACAATCTGCTCTATCCTGTTCATCGTGTCCAAGATGCTCATCTCCTTCCTGCTCTACAAGAAGTGGGCTCGCAAGAAACGGATCATCGAGAACAGCCTGACAGGTGGCAAGATGGTGATGTTCAGGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGTCGTTCCTGACCATGATCATGGGGCTCTCGAACAAGGACATCATCGGCTCCGGCGGGTACGGCACGGTGTACAGGCTAAGCGTCGGCGAGAAGGCGGCGTTCGCGGTGAAGAAGCTGAGCCGCGGCAGCGCCGAGATGGACCGGGGGTTCGAGCGCGAGCTGGACACCATGGGCGACATCAAGCACCGCAACATCGTCCCGCTCTGCGGCTACTACGCCGCCCCGCACTTCAACCTCCTCATCTACGAGCTCATGCCCAACGGCAGCCTCGACACCATCCTCCACGGGAAGGAGGAGACGAGGAGGGCGCTGGGGTGGGAGGCGAGGCACAAGATCGCGGCGGGGGTGGCGAGGGGGCTCGCGTACCTGCACCACGACTGCATCCCGCACGTGATCCACCGCGACATCAAGTCCAGCAACATCCTCCTCGACCACAACATGGAGGCCAGGGTCTCCGACTTCGGCCTCGCCACGCTCATGAAGCCCAACCATAGCCACGTCACCACCGTCGTCGCCGGCACCTTCGGCTACCTCGCCCCAGAGTACTTCGAGACCGGGAGGGCGACGACGAAGGGCGACGTGTACAGCTACGGCGTGGTGCTGCTGGAGCTCCTCACCGGGATGAGGCCGACGGACGAGTCGTTTCTTGAGAACGGCACGAGGCTAGTGACCTGGGTGAAGGAGACGATGGAGGAGAAGAGGGAGGAGCACGCGGTCGACAGCGCGCTGGAGTCGTCGTTCCCGGCGGAGGAGGTGAAGCTGGTGTTCAAAGTGGCAGACAAGTGCCTCGAGTCTGAGCCCTGCAACAGGCCAACCATGGCTGAAGTTGTCAAGCTGCTGGAGCAAGCCAAGAACACTACTGCATGA
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| Protein seq | MHTTMVALYITICSILFIVSKMLISFLLYKKWARKKRIIENSLTGGKMVMFRSAAMQSLSPKSFLTMIMGLSNKDIIGSGGYGTVYRLSVGEKAAFAVKKLSRGSAEMDRGFERELDTMGDIKHRNIVPLCGYYAAPHFNLLIYELMPNGSLDTILHGKEETRRALGWEARHKIAAGVARGLAYLHHDCIPHVIHRDIKSSNILLDHNMEARVSDFGLATLMKPNHSHVTTVVAGTFGYLAPEYFETGRATTKGDVYSYGVVLLELLTGMRPTDESFLENGTRLVTWVKETMEEKREEHAVDSALESSFPAEEVKLVFKVADKCLESEPCNRPTMAEVVKLLEQAKNTTA |
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| Function | Receptor-like serine/threonine-protein kinase At1g78530 [UniProtKB/Swiss-Prot:Q9SYM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0247500 | Os01t0247500-01 | Chr01 | 8125672 | 8128014 | - | irgsp1_rep | ||
| CDS seq | ATGCATACTACCATGGTTGCACTCTACATTACAATCTGCTCTATCCTGTTCATCGTGTCCAAGATGCTCATCTCCTTCCTGCTCTACAAGAAGTGGGCTCGCAAGAAACGGATCATCGAGAACAGCCTGACAGGTGGCAAGATGGTGATGTTCAGGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGTCGTTCCTGACCATGATCATGGGGCTCTCGAACAAGGACATCATCGGCTCCGGCGGGTACGGCACGGTGTACAGGCTAAGCGTCGGCGAGAAGGCGGCGTTCGCGGTGAAGAAGCTGAGCCGCGGCAGCGCCGAGATGGACCGGGGGTTCGAGCGCGAGCTGGACACCATGGGCGACATCAAGCACCGCAACATCGTCCCGCTCTGCGGCTACTACGCCGCCCCGCACTTCAACCTCCTCATCTACGAGCTCATGCCCAACGGCAGCCTCGACACCATCCTCCACGGGAAGGAGGAGACGAGGAGGGCGCTGGGGTGGGAGGCGAGGCACAAGATCGCGGCGGGGGTGGCGAGGGGGCTCGCGTACCTGCACCACGACTGCATCCCGCACGTGATCCACCGCGACATCAAGTCCAGCAACATCCTCCTCGACCACAACATGGAGGCCAGGGTCTCCGACTTCGGCCTCGCCACGCTCATGAAGCCCAACCATAGCCACGTCACCACCGTCGTCGCCGGCACCTTCGGCTACCTCGCCCCAGAGTACTTCGAGACCGGGAGGGCGACGACGAAGGGCGACGTGTACAGCTACGGCGTGGTGCTGCTGGAGCTCCTCACCGGGATGAGGCCGACGGACGAGTCGTTTCTTGAGAACGGCACGAGGCTAGTGACCTGGGTGAAGGAGACGATGGAGGAGAAGAGGGAGGAGCACGCGGTCGACAGCGCGCTGGAGTCGTCGTTCCCGGCGGAGGAGGTGAAGCTGGTGTTCAAAGTGGCAGACAAGTGCCTCGAGTCTGAGCCCTGCAACAGGCCAACCATGGCTGAAGTTGTCAAGCTGCTGGAGCAAGCCAAGAACACTACTGCATGA
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| Protein seq | MHTTMVALYITICSILFIVSKMLISFLLYKKWARKKRIIENSLTGGKMVMFRSAAMQSLSPKSFLTMIMGLSNKDIIGSGGYGTVYRLSVGEKAAFAVKKLSRGSAEMDRGFERELDTMGDIKHRNIVPLCGYYAAPHFNLLIYELMPNGSLDTILHGKEETRRALGWEARHKIAAGVARGLAYLHHDCIPHVIHRDIKSSNILLDHNMEARVSDFGLATLMKPNHSHVTTVVAGTFGYLAPEYFETGRATTKGDVYSYGVVLLELLTGMRPTDESFLENGTRLVTWVKETMEEKREEHAVDSALESSFPAEEVKLVFKVADKCLESEPCNRPTMAEVVKLLEQAKNTTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0247500 | RBH | 0.462612 | 0.462776 | 0.747269 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14510 | RBH | 0.280302 | 0.282429 | 0.241681 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010510 | RBH | 0.215392 | 1.487606 | 2.594079 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010140 | RBH | 0.201839 | 0.0 | 1.444504 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010480 | RBH | 0.000000 | 0.000000 | 4.174712 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010000 | RBH | 0.021244 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010050 | RBH | 0.000000 | 0.0 | 4.795241 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0134200 | RBH | 2.243848 | 0.121084 | 0.989352 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010060 | RBH | 0.054850 | 0.0 | 0.416541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0133500 | RBH | 3.3641335 | 0.162103 | 1.020925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010010 | RBH | 0.093928 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010080 | RBH | 0.157097 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010000 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010170 | RBH | 0.100068 | 0.000000 | 0.909194 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009940 | RBH | 0.180201 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010100 | RBH | 0.483735 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009970 | RBH | 0.530160 | 0.0 | 1.324377 |
