Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0227200 | OGI:01021910 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:7038103-7042925 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGTCGCGTCGCCAGTAGACTCCACTGGGGACGGTGTGGGTGGTGGTGGTAGTAGTAGTTCTCGCCCCCCTCAGGTCGCAATCCGCTCCAATTCCCCACCACCACCATCACCACCGCCGCGAGGGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGCTCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTGGTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGTGAGATGGAGATGGACACCTCTAAATTCCTACTACTTGCCTTGTCCCAGAGGAGATATACAGATCTTCTGTTTCCTTTTTGTCTCACTAGCAACACAGCTGCAAGACGTTGCTATCAACTGAAAATTTTGCTAAATTGCTGTCATGGTAAATGTTTTTTTTGGATTTATTGAAAAATTTTGAAGGACTTATTCTTGTTTGTTATGGGATGGAAGAACATATCGTTAGGCAAAAAAACACAGGATGTAGGTTTTGGTGTGGATTGTGCTAAGTTTACCATGGATGGAGTAGTGGTGTTGTGGATTATCAGTTCATCACTTGTGTTGAGATAACACAAAAGGTTAATTCTGGAAAGAAAGTGACAAGACCTGACATGGTCATGTAGTCCTGAGGTTACCTTACTTTTAAGCCAAATCATTTGGCAAACAAAAAGCATGTCATTTTCTTACTTTTTCATTCTTTGAGTTAACCATCACAGAGTTGAATATGTTTCTTTACATATATTTAATCTGTGAGCAATCATCTAAAAAGAAACAAAAACAAATGTGCAATCAATCATATCCTTCTCATATCATTCTGCATTGAGAAAATCTATTTGGAATATTAACTATGATCGGCGGTCTTTTCAGTACAATTCTTGCTGAGCTGCAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGTACACTCTCTTCTTGTGATCTCATTCTCACCGCTTCTTGCTTTATTTCAAAATCCTCTATGTACTTTGTGTTTAAAAGATAAGTAGCATGAACAGATATTAAAATGATTTAATACAAATTTAAGATATTTCTCTCTTGCTAGATTACAGTAGACAAAATACCTATTGCATTATTAAGAGAAATAAAATCCCATGAATCATTACAATGCAGTGAAATCCCTCATCCTTAACTGTTGAGGAATTTCATCAATGTTCAATCGGGCAAGTTCACGAATACCTGGAAGATACTATCTTTCATGTCACTTTTTTCAGTTAAAATTATCTTCTGGGGATTTGTCAGAATGATAATAAACAACATGTAGTATTTTTTTACACCAAATAGAAAAAAGAGAAAATGCTCTCTAGGTTCTTCAAATGCCCTTTTATGTAAAATCCAGAAACTTGCCTTGAAACAGCTGTCAATCTGTCATGAAATCCATGTTGTATACACATTTGGTTTGTCTGCTCTTGAGCATTTGTTAATGGCTATTTTCACCTCTTTCAGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGTGAGCGAACACCCATATCACTCGTTTTTCTTTTGGTTCCATTTTCCACTTCTTATAGGTATACATGCCTATTATATACTGATTTTCTCTCACACACTTTACAGGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGCGCTATACATTTTGTGTTTTGTTTCCTTTCTGTTTTAGAAGTGCATACTGATTGGTAATTACAGTCATCAAAGATTTTACAAATCAATATTTACATTGCGAACTTTTGATTAGACTTAAAGCACATTTTGTGAGCAAACAGTGCCTTCCATTCATTGGCAAGGTGGTTTTGACTGTTCTGATGTACTATGGTCAACTGGTAATCTGCCTGAAGGCGTACACAATTTTGATATAGGCTAAACTTTTCTGTCTACCTGATAAGTAAATTCAGAGAAATAGTAGTTGGCATATATCCAATCATAATTACAGTTATAGAGTTGATACGCATACTACCAAATAGTTTAATGTGTAATTTGCTATGTAAAACTCTTTTACAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTATGTTCTATCTACTTGTGTAGCAAGCATCAGTTCATATTTTCGAAAAAAAGGATTAATCAAAATCTATAATAAAGAATCATTTTTTAAGCTAGTGCATTACAGCATCAGCCGTATCAAAATCAGTTCCCTTGTAATACTTTTCCTGCCCTTAGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGTAAGTTATTTCTCGAAACTAATTAACTTTATTGTCCACAATACTTTCAGAGGTTTCGTAAAAAGAAAAGCAATACTTTCAGAGGTTATGCAATTTCTTTCAGTATATATACTTATCGTTGATTTTACATGATGATCCGTTGTAATTAATTTTATGAATACAACCCAATCATATCTTGAGGTCCATATTTGAAAATTTAAGTAACTACATTCTATACATTACTTTCCGCGAATCTAGTATCCAGATTCAGTGAAGTACTTTGTCCTTTATGTTTACTTTTGGCCTTCGTGTACATCTTTCTATACTTTAGTTTCTTGTACCGTTCATCATCCTGTGAAATTCTACAGTCTAGATAACGAGTTCCTCATGCCTATTTCCTGAACATGTGTTATGTTCTTTGAAAATCTTGTGTACAATCAATTGATTTTGTTCCTCCTACCTGCAGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTACCTTCTTGTACTTCAAGGTTCCTGTTCTTTTCTTTCATCAGTTTTCATCAGCACAGATTCATACAAGACAAGAAATTTCAGTGCAAAATATATTACTTACAGTGGACTATCAGCTACACTAGTTTCACTTCCAATGACAAAATTGATTCATCTGTGTAATTACAGGAAGGCAGCATATCATTTTTATCTAGTCTCTGAAGTCCTAACTACCGTTTGATTGATGCAATGAACAACAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCTGCATTACGTTTTTTTCGCTTGCC
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| CDS seq | ATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGA
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| Protein seq | MSSPSSPPPANQTATPPPANQTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVVGIVVGGLVVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSPPPPPAPLNVHSGGSGSNYSGGDNSQPLVSPGAALGFSRCTFTYEDLSAATDGFSDANLLGQGGFGYVHKGVLPNGTEVAVKQLRDGSGQGEREFQAEVEIISRVHHKHLVTLVGYCISGGKRLLVYEYVPNNTLELHLHGRGRPTMEWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDARFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGQLTEKSDVFSFGVMLLELITGRRPVRSNQSQMDDSLVDWARPLMMRASDDGNYDALVDPRLGQEYNGNEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLDDLNEGVRPGHSRFLGSYNSNEYDTGHYNEDLKKFRKMAFGSGNLESSQQTQPTEFVPNRSVSMGDARQIPETEMEMGSLKKDGDSNGTRDSQAS |
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| Function | Proline-rich receptor-like protein kinase PERK1 [UniProtKB/Swiss-Prot:Q9LV48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0227200 | Os01t0227200-01 | Chr01 | 7038103 | 7042925 | + | irgsp1_rep | ||
| CDS seq | ATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGA
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| Protein seq | MSSPSSPPPANQTATPPPANQTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVVGIVVGGLVVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSPPPPPAPLNVHSGGSGSNYSGGDNSQPLVSPGAALGFSRCTFTYEDLSAATDGFSDANLLGQGGFGYVHKGVLPNGTEVAVKQLRDGSGQGEREFQAEVEIISRVHHKHLVTLVGYCISGGKRLLVYEYVPNNTLELHLHGRGRPTMEWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDARFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGQLTEKSDVFSFGVMLLELITGRRPVRSNQSQMDDSLVDWARPLMMRASDDGNYDALVDPRLGQEYNGNEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLDDLNEGVRPGHSRFLGSYNSNEYDTGHYNEDLKKFRKMAFGSGNLESSQQTQPTEFVPNRSVSMGDARQIPETEMEMGSLKKDGDSNGTRDSQAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0227200 | RBH | 3.608265 | 3.086138 | 6.908032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12720 | RBH | 2.440097 | 2.213032 | 1.813881 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009110 | RBH | 0.245240 | 12.070095 | 8.681043 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008760 | RBH | 0.264594 | 3.094595 | 5.417052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009140 | RBH | 0.910968 | 5.285870 | 13.280210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008660 | RBH | 0.061931 | 0.051226 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008740 | RBH | 5.704981 | 7.516532 | 32.722477 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0114600 | RBH | 6.9575055 | 35.017778 | 22.026823 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008700 | RBH | 0.083469 | 0.591984 | 2.047390 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0114300 | RBH | 10.246361 | 47.298815 | 13.850716 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008640 | RBH | 0.349079 | 0.052899 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008740 | RBH | 0.856828 | 8.052588 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008690 | RBH | 11.484337 | 26.143909 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008760 | RBH | 1.679020 | 1.402898 | 3.608924 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008590 | RBH | 0.051400 | 5.681051 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008760 | RBH | 0.264079 | 0.000000 | 5.118778 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008630 | RBH | 0.255375 | 34.869022 | 10.979748 |
