Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0223000 | OGI:01021360 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:6718349-6719944 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGACATCAAGATTATTATGAAGTACTGAGAGGTACCTCAAATTAACACTGAAAATTTGGTGCTCTCTGTATATATCTTCTTATGGACTCTGAAAACACTCAAATTATTTTGTTCCCAGGTGACTCTGATGCGCAGCCAATCCTCCGCGATGTAGCGGTAAGCCACCTCCGTCATGTGAACCATGTCCCAGAAGAGACGAGCAGAAGGATCCTCGCAAGTGATCGCGCCCTGATTGCCACAGAGAGCAGTCCCAGGCCCTCCACAACAAATGGTAAGAACATCATCTTCAAACCCTGCAGCAATTGCAACCATTAACCCTCACTGCTTCCCTTTGCTGCAAAGATCCTACAGAACATGTACAGAAATCTGAAGAATCTGATGCACTGTGCTACTGACCAAACTTGCCAGGTGACTGCACCATCTCCATGATGGGGCTGAAGAAATCGGCGTAGATGATGCTGGCATCCGGGTGCCTGGCCTGGAGATTCCGAAGGGATTGTTGCAGCAGCGAGTTGTGAAGAATAGCTAGCTCGTTCTGCACCTTCAGGCAGCCGGTGACCGGGTCGTAGTCATCTGGGCCAGCTTGATCAGCAAACATGGCGAGAATTAGCGGCGTGCAACCTGACGGTGTCATGCCTGGAACGACCAAACTCTTCGCCCCGTGCTTGATCAGCCTCTGCCATCATTAGCCGAGTTCATCGGGTGATCGGTACTAATATTACTTGTAGTATTCATTTCAGTTCCAGATTAATGTCACATGATTGATTATCATGTACTAGATAATTATTACCTCGATGGCTATGGAGATGGTTTCGATGATATATGGGACGAACGATCTGATCTCTTCCATGCTCTTCTTCCTGAAGAAGAACTCGTAATCGTTGAATCCGAATTCGCCGACGAAGAAGAGGGATCTCCCGAAGAAATCCTTGCATTCTGCAGAGCAAAGGTATGAACTGCCTTTTTAGTTTCGCCAATTCTACGCGAATCTGTGATACATAGCTGCTACTCTTTTTGCCTTGTGTTGTGCTGCAGAGCGAAGGCTTGAGCGACTCGAACCAGCCCAGCTGAACGCCGAGGCTGGTGTTGACCGGGAACGGGCTGGCGCCCGGAGGAGGATCGCCGGCGTGGAAGATGCTGGAGTCGAGGGCGGTGGCGGCGCCAACGGCGAAGTTTGCGCCGCGGCGGAAGCTCCCGTTGTAAGCCAAGAATGGCGGCAAGAGCGGCACCCCCAGGCGTTCGGCTGCAAGCAAGCAAGCAAACAGAGAAAATCAAAATCCACCATGATCACAACAAAATTGACGATTGCCACATCGATGAATCGACGGCGGGGGAAGATGATCGGACCGACGAAGTCGACGACGAGGCGGCCGTCGCAGTTGCGGCCGGTGGGGTGGCCGAAGAAGGTGGAGCCGTACGGAGGGCGGGTGACGGGGTCGAAGACGGAGTACCAGCCGAAGACGACGGGGTTGTTGCCCGTGTCGGCGAAGGAGTCGCCGAAGCTGAAGATGGCGTCGTAGCGCCGAACGGAGAGGGAGGAGGCGCCGGCGCCGGCGCCGGCGGCATGCAGCGACGACAGAGAGGAGAAGAGAGA
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| CDS seq | TCTCTCTTCTCCTCTCTGTCGTCGCTGCATGCCGCCGGCGCCGGCGCCGGCGCCTCCTCCCTCTCCGTTCGGCGCTACGACGCCATCTTCAGCTTCGGCGACTCCTTCGCCGACACGGGCAACAACCCCGTCGTCTTCGGCTGGTACTCCGTCTTCGACCCCGTCACCCGCCCTCCGTACGGCTCCACCTTCTTCGGCCACCCCACCGGCCGCAACTGCGACGGCCGCCTCGTCGTCGACTTCGTCGCCGAACGCCTGGGGGTGCCGCTCTTGCCGCCATTCTTGGCTTACAACGGGAGCTTCCGCCGCGGCGCAAACTTCGCCGTTGGCGCCGCCACCGCCCTCGACTCCAGCATCTTCCACGCCGGCGATCCTCCTCCGGGCGCCAGCCCGTTCCCGGTCAACACCAGCCTCGGCGTTCAGCTGGGCTGGTTCGAGTCGCTCAAGCCTTCGCTCTGCAGCACAACACAAGAATGCAAGGATTTCTTCGGGAGATCCCTCTTCTTCGTCGGCGAATTCGGATTCAACGATTACGAGTTCTTCTTCAGGAAGAAGAGCATGGAAGAGATCAGATCGTTCGTCCCATATATCATCGAAACCATCTCCATAGCCATCGAGAGGCTGATCAAGCACGGGGCGAAGAGTTTGGTCGTTCCAGGCATGACACCGTCAGGTTGCACGCCGCTAATTCTCGCCATGTTTGCTGATCAAGCTGGCCCAGATGACTACGACCCGGTCACCGGCTGCCTGAAGGTGCAGAACGAGCTAGCTATTCTTCACAACTCGCTGCTGCAACAATCCCTTCGGAATCTCCAGGCCAGGCACCCGGATGCCAGCATCATCTACGCCGATTTCTTCAGCCCCATCATGGAGATGGTGCAGTCACCTGGCAAGTTTGGGTTTGAAGATGATGTTCTTACCATTTGTTGTGGAGGGCCTGGGACTGCTCTCTGTGGCAATCAGGGCGCGATCACTTGCGAGGATCCTTCTGCTCGTCTCTTCTGGGACATGGTTCACATGACGGAGGTGGCTTACCGCTACATCGCGGAGGATTGGCTGCGCATCAGAGTCACCTGGGAACAAAATAATTTGAGTGTTTTCAGAGTCCATAAGAAGATATATACAGAGAGCACCAAATTTTCAGTGTTAATTTGA
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| Protein seq | SLFSSLSSLHAAGAGAGASSLSVRRYDAIFSFGDSFADTGNNPVVFGWYSVFDPVTRPPYGSTFFGHPTGRNCDGRLVVDFVAERLGVPLLPPFLAYNGSFRRGANFAVGAATALDSSIFHAGDPPPGASPFPVNTSLGVQLGWFESLKPSLCSTTQECKDFFGRSLFFVGEFGFNDYEFFFRKKSMEEIRSFVPYIIETISIAIERLIKHGAKSLVVPGMTPSGCTPLILAMFADQAGPDDYDPVTGCLKVQNELAILHNSLLQQSLRNLQARHPDASIIYADFFSPIMEMVQSPGKFGFEDDVLTICCGGPGTALCGNQGAITCEDPSARLFWDMVHMTEVAYRYIAEDWLRIRVTWEQNNLSVFRVHKKIYTESTKFSVLI |
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| Function | GDSL esterase/lipase At2g27360 [UniProtKB/Swiss-Prot:Q9ZQI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0223000 | Os01t0223000-01 | Chr01 | 6718349 | 6719944 | - | irgsp1_rep | ||
| CDS seq | TCTCTCTTCTCCTCTCTGTCGTCGCTGCATGCCGCCGGCGCCGGCGCCGGCGCCTCCTCCCTCTCCGTTCGGCGCTACGACGCCATCTTCAGCTTCGGCGACTCCTTCGCCGACACGGGCAACAACCCCGTCGTCTTCGGCTGGTACTCCGTCTTCGACCCCGTCACCCGCCCTCCGTACGGCTCCACCTTCTTCGGCCACCCCACCGGCCGCAACTGCGACGGCCGCCTCGTCGTCGACTTCGTCGCCGAACGCCTGGGGGTGCCGCTCTTGCCGCCATTCTTGGCTTACAACGGGAGCTTCCGCCGCGGCGCAAACTTCGCCGTTGGCGCCGCCACCGCCCTCGACTCCAGCATCTTCCACGCCGGCGATCCTCCTCCGGGCGCCAGCCCGTTCCCGGTCAACACCAGCCTCGGCGTTCAGCTGGGCTGGTTCGAGTCGCTCAAGCCTTCGCTCTGCAGCACAACACAAGAATGCAAGGATTTCTTCGGGAGATCCCTCTTCTTCGTCGGCGAATTCGGATTCAACGATTACGAGTTCTTCTTCAGGAAGAAGAGCATGGAAGAGATCAGATCGTTCGTCCCATATATCATCGAAACCATCTCCATAGCCATCGAGAGGCTGATCAAGCACGGGGCGAAGAGTTTGGTCGTTCCAGGCATGACACCGTCAGGTTGCACGCCGCTAATTCTCGCCATGTTTGCTGATCAAGCTGGCCCAGATGACTACGACCCGGTCACCGGCTGCCTGAAGGTGCAGAACGAGCTAGCTATTCTTCACAACTCGCTGCTGCAACAATCCCTTCGGAATCTCCAGGCCAGGCACCCGGATGCCAGCATCATCTACGCCGATTTCTTCAGCCCCATCATGGAGATGGTGCAGTCACCTGGCAAGTTTGGGTTTGAAGATGATGTTCTTACCATTTGTTGTGGAGGGCCTGGGACTGCTCTCTGTGGCAATCAGGGCGCGATCACTTGCGAGGATCCTTCTGCTCGTCTCTTCTGGGACATGGTTCACATGACGGAGGTGGCTTACCGCTACATCGCGGAGGATTGGCTGCGCATCAGAGTCACCTGGGAACAAAATAATTTGAGTGTTTTCAGAGTCCATAAGAAGATATATACAGAGAGCACCAAATTTTCAGTGTTAATTTGA
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| Protein seq | SLFSSLSSLHAAGAGAGASSLSVRRYDAIFSFGDSFADTGNNPVVFGWYSVFDPVTRPPYGSTFFGHPTGRNCDGRLVVDFVAERLGVPLLPPFLAYNGSFRRGANFAVGAATALDSSIFHAGDPPPGASPFPVNTSLGVQLGWFESLKPSLCSTTQECKDFFGRSLFFVGEFGFNDYEFFFRKKSMEEIRSFVPYIIETISIAIERLIKHGAKSLVVPGMTPSGCTPLILAMFADQAGPDDYDPVTGCLKVQNELAILHNSLLQQSLRNLQARHPDASIIYADFFSPIMEMVQSPGKFGFEDDVLTICCGGPGTALCGNQGAITCEDPSARLFWDMVHMTEVAYRYIAEDWLRIRVTWEQNNLSVFRVHKKIYTESTKFSVLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0223000 | RBH | 0.204647 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12304 | RBH | 0.137930 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0223500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008830 | SBH | 0.118533 | 42.185192 | 3.455866 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008470 | SBH | 0.720077 | 1.507021 | 5.397151 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008860 | SBH | 0.666261 | 25.685282 | 12.202297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008370 | SBH | 0.097100 | 0.122590 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008460 | SBH | 3.210895 | 16.150188 | 17.498058 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0110600 | RBH | 0 | 0.0151375 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008440 | SBH | 0.010586 | 0.483317 | 0.656057 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0110000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008910 | SBH | 0.410442 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008460 | SBH | 0.669616 | 16.525978 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008440 | SBH | 3.783655 | 5.241076 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008480 | SBH | 1.305282 | 1.098179 | 1.202361 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008350 | SBH | 0.303749 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008470 | SBH | 0.221290 | 1.241467 | 2.030111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008340 | SBH | 1.349344 | 2.508983 | 6.314412 |
