Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0213400 | OGI:01019840 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:6199245-6200202 | ||||||||
| Gene Symbol | RFPH2-8, OsRFPH2-8 | ||||||||||
| DNA seq | GCGGGGAATGTATTATGCAGTTGTTTCTTAGCTATATATGGGAAAGAAATAAAGAATCACATCACAAATGCGTTTCACAATCTACACTTGATAGAGCTCCTATAGCAAAATAAAGAATCACATCACAACTCTGAAGTTCGTCGTCATCGTCGATCCTCAATTCCTTGCAGCCTCGCAGCTAGGAGAGTTCGAGGATCCCGGTTGACCAGTCAACGCCGTTGACCTGCCACCGGCTTCGTCAGAGCCGCCGTGTATGGTCACGACCACGGTAATTCCTCCGTCACCGAGCGACGACGACGACTGCGCCGTCGCCGTCGCCGCCGCCGAAGCCCTCGCCTTGGGTACTTCCGCCTCGGCCCGGCAGAGCGGGCACGTGGTCCTGGAGCGCAGCCACGCGTCGACGCACTCCACGTGGAAGACGTGCCGGCAGTTGGGCAGCTCCCGCACCTTCTCGCCGTCGGCGAGCTCCGACAGACACACGGCGCAGTCGGCGGCGGTGGCGCCAGGCCCGCCGCGGTTGGAGCCCTCCCCACCACCGCCCCCGCCGCCGTTCTTCCGGTACGCGGTGACCGGCAGCGCGGCGAGCGCGGACGCGTCCAGCCCGCGGCGACCGCTCACGCCGAGCGAGTTCAACGACCGCAAGATCCCCCCTGCCAGGCCGCCACGACGACGGCCTCCGCCGCCACCGCCGGGCCGCACCACGAGGTAGTACAGCAAGACGCGGGTGACGGCGAAGACGACGGCGATCACGAACAGGATCACGACGGCCGTGAGCAGCACGCGCCCGCTGAAGTTGTAGCTCTGCTGCTGACTCCACGAATCCTCCGACCTCGCCGCCGGCGGCGCGCCCGACAAGGCTGTATCCGACATGACCAAACTATCCCTTATCCTCTAAATCTTCCACTCTTTCTGCTGCTACTAATCACTAACCTAACTTGCAAGACCAGAGCAAAGCCCT
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| CDS seq | ATGTCGGATACAGCCTTGTCGGGCGCGCCGCCGGCGGCGAGGTCGGAGGATTCGTGGAGTCAGCAGCAGAGCTACAACTTCAGCGGGCGCGTGCTGCTCACGGCCGTCGTGATCCTGTTCGTGATCGCCGTCGTCTTCGCCGTCACCCGCGTCTTGCTGTACTACCTCGTGGTGCGGCCCGGCGGTGGCGGCGGAGGCCGTCGTCGTGGCGGCCTGGCAGGGGGGATCTTGCGGTCGTTGAACTCGCTCGGCGTGAGCGGTCGCCGCGGGCTGGACGCGTCCGCGCTCGCCGCGCTGCCGGTCACCGCGTACCGGAAGAACGGCGGCGGGGGCGGTGGTGGGGAGGGCTCCAACCGCGGCGGGCCTGGCGCCACCGCCGCCGACTGCGCCGTGTGTCTGTCGGAGCTCGCCGACGGCGAGAAGGTGCGGGAGCTGCCCAACTGCCGGCACGTCTTCCACGTGGAGTGCGTCGACGCGTGGCTGCGCTCCAGGACCACGTGCCCGCTCTGCCGGGCCGAGGCGGAAGTACCCAAGGCGAGGGCTTCGGCGGCGGCGACGGCGACGGCGCAGTCGTCGTCGTCGCTCGGTGACGGAGGAATTACCGTGGTCGTGACCATACACGGCGGCTCTGACGAAGCCGGTGGCAGGTCAACGGCGTTGACTGGTCAACCGGGATCCTCGAACTCTCCTAGCTGCGAGGCTGCAAGGAATTGA
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| Protein seq | MSDTALSGAPPAARSEDSWSQQQSYNFSGRVLLTAVVILFVIAVVFAVTRVLLYYLVVRPGGGGGGRRRGGLAGGILRSLNSLGVSGRRGLDASALAALPVTAYRKNGGGGGGGEGSNRGGPGATAADCAVCLSELADGEKVRELPNCRHVFHVECVDAWLRSRTTCPLCRAEAEVPKARASAAATATAQSSSSLGDGGITVVVTIHGGSDEAGGRSTALTGQPGSSNSPSCEAARN |
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| Function | E3 ubiquitin-protein ligase ATL41 [UniProtKB/Swiss-Prot:Q9SLC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0213400 | Os01t0213400-01 | Chr01 | 6199245 | 6200202 | - | irgsp1_rep | ||
| CDS seq | ATGTCGGATACAGCCTTGTCGGGCGCGCCGCCGGCGGCGAGGTCGGAGGATTCGTGGAGTCAGCAGCAGAGCTACAACTTCAGCGGGCGCGTGCTGCTCACGGCCGTCGTGATCCTGTTCGTGATCGCCGTCGTCTTCGCCGTCACCCGCGTCTTGCTGTACTACCTCGTGGTGCGGCCCGGCGGTGGCGGCGGAGGCCGTCGTCGTGGCGGCCTGGCAGGGGGGATCTTGCGGTCGTTGAACTCGCTCGGCGTGAGCGGTCGCCGCGGGCTGGACGCGTCCGCGCTCGCCGCGCTGCCGGTCACCGCGTACCGGAAGAACGGCGGCGGGGGCGGTGGTGGGGAGGGCTCCAACCGCGGCGGGCCTGGCGCCACCGCCGCCGACTGCGCCGTGTGTCTGTCGGAGCTCGCCGACGGCGAGAAGGTGCGGGAGCTGCCCAACTGCCGGCACGTCTTCCACGTGGAGTGCGTCGACGCGTGGCTGCGCTCCAGGACCACGTGCCCGCTCTGCCGGGCCGAGGCGGAAGTACCCAAGGCGAGGGCTTCGGCGGCGGCGACGGCGACGGCGCAGTCGTCGTCGTCGCTCGGTGACGGAGGAATTACCGTGGTCGTGACCATACACGGCGGCTCTGACGAAGCCGGTGGCAGGTCAACGGCGTTGACTGGTCAACCGGGATCCTCGAACTCTCCTAGCTGCGAGGCTGCAAGGAATTGA
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| Protein seq | MSDTALSGAPPAARSEDSWSQQQSYNFSGRVLLTAVVILFVIAVVFAVTRVLLYYLVVRPGGGGGGRRRGGLAGGILRSLNSLGVSGRRGLDASALAALPVTAYRKNGGGGGGGEGSNRGGPGATAADCAVCLSELADGEKVRELPNCRHVFHVECVDAWLRSRTTCPLCRAEAEVPKARASAAATATAQSSSSLGDGGITVVVTIHGGSDEAGGRSTALTGQPGSSNSPSCEAARN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0213400 | RBH | 0.509695 | 0.485492 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11520 | RBH | 0.265866 | 0.387454 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0755700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008220 | RBH | 0.253737 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007870 | RBH | 0.167273 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008230 | RBH | 0.824214 | 2.791633 | 0.749216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007750 | RBH | 0.0 | 0.017781 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007860 | RBH | 1.358554 | 0.0 | 1.472339 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0101100 | RBH | 1.002781 | 6.199286 | 0.045219 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007780 | RBH | 0.0 | 0.143565 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0101800 | SBH | 0.1013845 | 0.0477775 | 0.30666 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007860 | RBH | 0.0 | 4.119066 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007750 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007830 | RBH | 0.195866 | 0.902056 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007680 | RBH | 0.0 | 10.209186 | 0.0 |
