Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0200600 | OGI:01017980 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:5454772-5455667 | ||||||||
| Gene Symbol | ERF39, OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2 | ||||||||||
| DNA seq | ATCACACAAACTCCAAATCCAACTCAAATCAAGATTGAAAGAGAGAAGAAAAAAAACAAGCCACATTTTAAGCAGCACTAGGGGAAAAAATCCACACAAAAAACAAAACCAAAAAAAGAAAAGAAAAGAAAAGAAGAGGAAGCTGTTTTACAAGCAGCAGCCTAGTACTCCCAGAGGAGAGGCTGGAAGCCGATGGGGTCAAGCGCATCGTACGCCGTCCAGCAATGATCCGACGTCCCGAACTCCACCACGTCCTCCACCCACAGCGGCGCCAGCTCGTCGAACACCAGCTCGGCCACCGCCATCTGCGCCGCCGCCGCCGCCGCCGGCTGCTGCTGCTGGTCATCCTCCCTGCTCGACTCAGGCTGCTGCGGCTCGTGGCGAGGGTGGTGTTCGTCCGGCGGAGGAGCAGCCGGCGGCGAGGAGGTGGAGGTGGAGGAGGAGGGGTGTTTGTGGTGGTGCATGACGGCGGCGAGGGCGGCGGCGGCCTGGACGTCGCGGGGGGCGAGGGAGGCCGGGCGCGGGAGGGCAGGGGCGAGGTCGGGGAAGTTGAGGACGGCGCGGGCGCCCTTGATGCTGAGCGCGGCGACGTCGTGCGCACGCGCCGCCATCTCCGGGCACGGGAAGGTGCCGAGCCAGATGCGGGACTTCTTCCTCGGCTCCCTGATCTCCGACACCCACTTCCCCCACGCCCTCATCCTCACCCCCCTGTACGCCACCGCCGCCGCCTGCTCCCCGCCGCCGCCGACGTCCTCGCGCTTCCTCTTCCCGGCCACCTGCTGTTTCTTGCCGCACGACGACGTGGACGCCGTCGACGACGACTCGGAGCTCTGCTCGCTGGCTGCCATGGCGATCGATCGAGCGCTCGACGACGACGACGACGACGCGGAGGTGGG
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| CDS seq | ATGGCAGCCAGCGAGCAGAGCTCCGAGTCGTCGTCGACGGCGTCCACGTCGTCGTGCGGCAAGAAACAGCAGGTGGCCGGGAAGAGGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGGTGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAG
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| Protein seq | MAASEQSSESSSTASTSSCGKKQQVAGKRKREDVGGGGEQAAAVAYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPCPEMAARAHDVAALSIKGARAVLNFPDLAPALPRPASLAPRDVQAAAALAAVMHHHKHPSSSTSTSSPPAAPPPDEHHPRHEPQQPESSREDDQQQQPAAAAAAQMAVAELVFDELAPLWVEDVVEFGTSDHCWTAYDALDPIGFQPLLWEY |
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| Function | Dehydration-responsive element-binding protein 3 [UniProtKB/Swiss-Prot:Q9LYD3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0200600 | Os01t0200600-01 | Chr01 | 5454772 | 5455667 | - | irgsp1_rep | ||
| CDS seq | ATGGCAGCCAGCGAGCAGAGCTCCGAGTCGTCGTCGACGGCGTCCACGTCGTCGTGCGGCAAGAAACAGCAGGTGGCCGGGAAGAGGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGGTGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAG
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| Protein seq | MAASEQSSESSSTASTSSCGKKQQVAGKRKREDVGGGGEQAAAVAYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPCPEMAARAHDVAALSIKGARAVLNFPDLAPALPRPASLAPRDVQAAAALAAVMHHHKHPSSSTSTSSPPAAPPPDEHHPRHEPQQPESSREDDQQQQPAAAAAAQMAVAELVFDELAPLWVEDVVEFGTSDHCWTAYDALDPIGFQPLLWEY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0200600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007390 | RBH | 0.0 | 0.417385 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007040 | RBH | 0.0 | 0.0 | 0.299288 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007360 | RBH | 0.0 | 1.622605 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007020 | RBH | 0.0 | 6.496885 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0089900 | RBH | 0 | 0.106389 | 0.211298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006960 | RBH | 0.000000 | 0.301283 | 0.115941 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0090400 | RBH | 0.1443985 | 0.025602 | 0.3003435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006960 | RBH | 0.0 | 2.841996 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007000 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006910 | RBH | 0.0 | 4.034447 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006830 | RBH | 0.0 | 0.0 | 0.674826 |
