Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0195000 | OGI:01017070 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:5099555-5102080 | ||||||||
| Gene Symbol | IDD2, OsIDD2 | ||||||||||
| DNA seq | ACACACACTTGCTCCTCATTCCTCTCTCCTCTCCTCTCCTCTCTCTCATCAACCCTAGCTTGATAGTTGATTCAACCAGCCAATATATTCGATCTCCCCTTCTCTTCTTCTCTCGATCGATCGGGTGATGAGAAGCCAATTGAGAATTTGAGATCGTTCGATCATCACCTCGTTTCTTGCTGAGATTATAGCCAAGCTCCATGATTCCGTCTATGCCGGTAGTGACACTGCAAGGTGCACACCAGTAGATAGCTAGTGGCAGCAGCAGCAGCAGCATCAGTGGAGCTAGTCGTCGTCCCGGCCGGCCTTGCCGTCAGAGATCGATCGGTGTAAGTTACAGGGTGCAAGTGCGATCGATCGCCACCGGCGCAGCGAGATCTGATTGATATTGATCCATCGCCGATCGATTGATCATACGTTCAGATATCATAATCAGCAGCAGCTGGTAGAATTCAAGAGAAGTTCGTCCAGATGATGCTCAAGGATCTGGCCGAAATTCAGCAGCAGCAGCTGCTCGCCGCCGCCGAGGAGAACATGTCGAACCTGACGTCGGCGTCCGGCGACCAGGCCAGCGTCTCGTCCCACCCCGCTCCTCCTCCCGCCAAGAAGAAGCGCAGCCTCCCCGGCAACCCAGGTCAGCACCGAATTCTTCGATCGCGATCGAGTTAATCGAATTTAGGATGAACTAACTAACTAATTATGGGTAGATCCTGAGGCGGAGGTGATCGCGCTGTCGCCGAGGACGCTGATGGCGACGAACAGGTACGTGTGCGAGATCTGCGGGAAAGGGTTCCAGCGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGAACCCCAAGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGGCCGGCTGCGTCCACCACGACCCGGCGCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCACTCCGACTGGAAGGCCCACTCCAAGGTCTGCGGCACCCGCGAGTACCGCTGCGATTGCGGCACCCTCTTCTCCCGGTCAGTCGTCTCTCGTGGCCGCCGCCGCCGCCGCCGCCATGGCCGTCGTCGGAGGTTCTGATGATCGGGTTGCGGTGTGGGTGCAGGCGGGACAGCTTCATCACGCACAGGGCGTTCTGCGACGCGCTGGCGGAGGAGAGCGCGAGGGCGGTCACGGCGGCGGCGGCGGTGGCGGGGCAGCAGCAGCATGGCGGCGGGATGCTCTTCTCGCAGGTGGCGGATGTGCTTGATCACCAGGCGGCGATGGCGATGGGGGGGCATGGGCTGATGCAAGAGCTGTGCCTCAAGAGGGAGCAGCAGCAGCAGCAGCAGCAGTTCGCGCCGTCGTGGCTCACGGCGCAGCAGCAGCAGCAGCAGCTGGAGGCGATGGCCGGCGCGGGGAATCCGGCGGCGATGTACGGGTCGGCGAGGCTGGACCAGGAGTTCATCGGGAGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGGTTCTCGTCGACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCCACCGCGCTGCTGCAGAAGGCGGCGCAGATGGGCGCGACGCTGAGCCGCCCGTCGAGCCACGCCCACATGGCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGCAGCGCCGCCACCACCAATGCTCCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGCGGCTACGGGCTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGCGCCAGGTCCGATCGTGACACCGGCAATGGCGTCGCCGGAGCCGGCAACGACGGCCTCACCAGGGACTTCTTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGCATGGCCGGCTTCGATCCCTGCATGTCGACGACGTCGGCGTCGTCGGCGGCGCCGTACGACCACCACCACCACAGCAACAAGCCATGGCATAGCTAGTAACCACCTCGGCCGCCATGGATGAATAGCGAATGAATCATGCAAGCAAATCCAAACAAATTTTGTTCGTGGGCTACTCATCGATCGTTCGACAAGAACTGCCTGATGATGATGATCATGTCAAGATTATTTCATAGCTGGGTAAGTGAGTCGAATTTACCCAGCTCTCTCTCTTTTGATGTTCCAATTGAGGTTTAATAATTCGATGTTCTTTTGGGAGGGTATGGGCTGTTCAATTCATATATATGGAACTTTTCAAATTATATACTGTTGTTTATGCTAGCTATATATCATAGTTAATTCATCTTCCTACTGTAATAATAAAATTTTTAGCCATTCTCAGCTCATAAAGCTGTGTAGAGCTACTGCCATTAGAGCTCCATTTGTAATCAGTTGTTACCATTAATCATTCCCTTAAATTTCTAGTTCCTG
More
|
||||||||||
| CDS seq | ATGATGCTCAAGGATCTGGCCGAAATTCAGCAGCAGCAGCTGCTCGCCGCCGCCGAGGAGAACATGTCGAACCTGACGTCGGCGTCCGGCGACCAGGCCAGCGTCTCGTCCCACCCCGCTCCTCCTCCCGCCAAGAAGAAGCGCAGCCTCCCCGGCAACCCAGATCCTGAGGCGGAGGTGATCGCGCTGTCGCCGAGGACGCTGATGGCGACGAACAGGTACGTGTGCGAGATCTGCGGGAAAGGGTTCCAGCGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGAACCCCAAGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGGCCGGCTGCGTCCACCACGACCCGGCGCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCACTCCGACTGGAAGGCCCACTCCAAGGTCTGCGGCACCCGCGAGTACCGCTGCGATTGCGGCACCCTCTTCTCCCGGCGGGACAGCTTCATCACGCACAGGGCGTTCTGCGACGCGCTGGCGGAGGAGAGCGCGAGGGCGGTCACGGCGGCGGCGGCGGTGGCGGGGCAGCAGCAGCATGGCGGCGGGATGCTCTTCTCGCAGGTGGCGGATGTGCTTGATCACCAGGCGGCGATGGCGATGGGGGGGCATGGGCTGATGCAAGAGCTGTGCCTCAAGAGGGAGCAGCAGCAGCAGCAGCAGCAGTTCGCGCCGTCGTGGCTCACGGCGCAGCAGCAGCAGCAGCAGCTGGAGGCGATGGCCGGCGCGGGGAATCCGGCGGCGATGTACGGGTCGGCGAGGCTGGACCAGGAGTTCATCGGGAGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGGTTCTCGTCGACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCCACCGCGCTGCTGCAGAAGGCGGCGCAGATGGGCGCGACGCTGAGCCGCCCGTCGAGCCACGCCCACATGGCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGCAGCGCCGCCACCACCAATGCTCCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGCGGCTACGGGCTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGCGCCAGGTCCGATCGTGACACCGGCAATGGCGTCGCCGGAGCCGGCAACGACGGCCTCACCAGGGACTTCTTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGCATGGCCGGCTTCGATCCCTGCATGTCGACGACGTCGGCGTCGTCGGCGGCGCCGTACGACCACCACCACCACAGCAACAAGCCATGGCATAGCTAG
More
|
||||||||||
| Protein seq | MMLKDLAEIQQQQLLAAAEENMSNLTSASGDQASVSSHPAPPPAKKKRSLPGNPDPEAEVIALSPRTLMATNRYVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRNPKEVVRKKVYVCPEAGCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVHSDWKAHSKVCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAAAAVAGQQQHGGGMLFSQVADVLDHQAAMAMGGHGLMQELCLKREQQQQQQQFAPSWLTAQQQQQQLEAMAGAGNPAAMYGSARLDQEFIGSSTPESGGAQQAGLSFGFSSTSSAPPHPAASSAHMSATALLQKAAQMGATLSRPSSHAHMAAAAAASTHNSSSSAATTNAPPPPPTSNVSSTCVGAGGYGLAFEASHFIAADESSRGARSDRDTGNGVAGAGNDGLTRDFLGLRAFSHGNIMSMAGFDPCMSTTSASSAAPYDHHHHSNKPWHS |
||||||||||
| Function | Protein indeterminate-domain 7 [UniProtKB/Swiss-Prot:Q8H1F5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0195000 | Os01t0195000-01 | Chr01 | 5099555 | 5102080 | + | irgsp1_rep | ||
| CDS seq | ATGATGCTCAAGGATCTGGCCGAAATTCAGCAGCAGCAGCTGCTCGCCGCCGCCGAGGAGAACATGTCGAACCTGACGTCGGCGTCCGGCGACCAGGCCAGCGTCTCGTCCCACCCCGCTCCTCCTCCCGCCAAGAAGAAGCGCAGCCTCCCCGGCAACCCAGATCCTGAGGCGGAGGTGATCGCGCTGTCGCCGAGGACGCTGATGGCGACGAACAGGTACGTGTGCGAGATCTGCGGGAAAGGGTTCCAGCGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGAACCCCAAGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGGCCGGCTGCGTCCACCACGACCCGGCGCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCACTCCGACTGGAAGGCCCACTCCAAGGTCTGCGGCACCCGCGAGTACCGCTGCGATTGCGGCACCCTCTTCTCCCGGCGGGACAGCTTCATCACGCACAGGGCGTTCTGCGACGCGCTGGCGGAGGAGAGCGCGAGGGCGGTCACGGCGGCGGCGGCGGTGGCGGGGCAGCAGCAGCATGGCGGCGGGATGCTCTTCTCGCAGGTGGCGGATGTGCTTGATCACCAGGCGGCGATGGCGATGGGGGGGCATGGGCTGATGCAAGAGCTGTGCCTCAAGAGGGAGCAGCAGCAGCAGCAGCAGCAGTTCGCGCCGTCGTGGCTCACGGCGCAGCAGCAGCAGCAGCAGCTGGAGGCGATGGCCGGCGCGGGGAATCCGGCGGCGATGTACGGGTCGGCGAGGCTGGACCAGGAGTTCATCGGGAGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGGTTCTCGTCGACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCCACCGCGCTGCTGCAGAAGGCGGCGCAGATGGGCGCGACGCTGAGCCGCCCGTCGAGCCACGCCCACATGGCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGCAGCGCCGCCACCACCAATGCTCCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGCGGCTACGGGCTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGCGCCAGGTCCGATCGTGACACCGGCAATGGCGTCGCCGGAGCCGGCAACGACGGCCTCACCAGGGACTTCTTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGCATGGCCGGCTTCGATCCCTGCATGTCGACGACGTCGGCGTCGTCGGCGGCGCCGTACGACCACCACCACCACAGCAACAAGCCATGGCATAGCTAG
More
|
|||||||
| Protein seq | MMLKDLAEIQQQQLLAAAEENMSNLTSASGDQASVSSHPAPPPAKKKRSLPGNPDPEAEVIALSPRTLMATNRYVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRNPKEVVRKKVYVCPEAGCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVHSDWKAHSKVCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAAAAVAGQQQHGGGMLFSQVADVLDHQAAMAMGGHGLMQELCLKREQQQQQQQFAPSWLTAQQQQQQLEAMAGAGNPAAMYGSARLDQEFIGSSTPESGGAQQAGLSFGFSSTSSAPPHPAASSAHMSATALLQKAAQMGATLSRPSSHAHMAAAAAASTHNSSSSAATTNAPPPPPTSNVSSTCVGAGGYGLAFEASHFIAADESSRGARSDRDTGNGVAGAGNDGLTRDFLGLRAFSHGNIMSMAGFDPCMSTTSASSAAPYDHHHHSNKPWHS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0195000 | RBH | 0.309093 | 0.517330 | 3.270767 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g09850 | RBH | 0.184337 | 0.303796 | 0.677410 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007070 | RBH | 0.280738 | 16.686449 | 2.591609 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006710 | RBH | 0.0 | 0.866564 | 1.233559 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007010 | RBH | 0.0 | 10.690668 | 3.561250 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006530 | RBH | 0.0 | 0.308718 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006690 | RBH | 1.153252 | 13.202777 | 4.586156 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0085100 | RBH | 3.584905 | 12.2383365 | 4.015926 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006660 | RBH | 0.000000 | 0.578585 | 0.495667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0086500 | RBH | 3.141326 | 6.887522 | 10.376063 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006450 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006650 | RBH | 0.000000 | 9.256101 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006690 | RBH | 1.245097 | 22.769760 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006660 | RBH | 0.074445 | 1.155721 | 0.623333 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006610 | RBH | 0.000000 | 3.449457 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006660 | RBH | 0.063270 | 2.507753 | 1.862040 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006540 | RBH | 0.0 | 7.715897 | 2.388482 |
