Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0171100 | OGI:01013660 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:3678431-3680909 | ||||||||
| Gene Symbol | TPR2, OsTPR002, TPR002, OsTPR2 | ||||||||||
| DNA seq | AAGAGAAGGCCATTCCTTGACGGTAATAGCCTTTCGCCCAGTCCGGTTGCATCTTGCTGCAGATCTGAGCATCTGAGAGTGCCTCATCGCCTATGCCAAGGTTTAACCAGCAAGCACTCCTGTTTGAATATAACTTTGCGTCGGTGTTGTCGAACTTCATTGCCTATTATCATCAAACATTGTTACTGTTTCTGTAGGTCAGGGGGGGGGGGGGGGTTCAGGAGTCTGAACTCAAAAGGTCAAGCTAAACCAAGGGAGTTGAAAAAGGGTACGAATATACAATATGTGCTCCCCAGTGGCTTTGCTTCAGTTACTCACAAAGCAGTATTTTGCACCTTTTGAACTGAAAAAACATTTGCAACCAAACATGAGCATGAAAAATCGGGAATGAGCAAAAGTTGTTACCATGCTGTATAGCAGTATTGCAGCATCGTAGTCCTCGTTGTTGAAAGAGGAGTTGCCTTGTAGTTTGAGTTCATCCTTCCTTTTACATGATGCATTTCTTGCCTGTTCAGAAAACTGATTAAAGTTCAACAGTGATCGAATAGTCCCAAGACCCAACTGCTATGACAGTGTGTTCAGCACCCAAGAGCTTGCAAAAATGCAAACTGATTCATGTGAAGCTAGTACTACATATCTAGTTAACAGAAATTTCACATACCCATTCCTTGTAAGCAGGATATTTTACATATCTGATGATCCCACCAACACTCCAATCTAGAAGAGTAGGTACTTGGTGGGTCAATGGCAATAGAACCTCAATGACTTCCCGTTCGGCATGGATTGCAGCAATTTCTATTGGTAACCTATCAAGCTGTTAAAGCATAAAAATACATTATATTTTTAAGAAAACATATCAGAAAACAAGATGATGAAACTGTAGGGAACAAACTTTGTGCACATGAGTTGACAAAAAGAACATAAGTATTGAGGGAAACAAGGGGGCTATATATATGCTCACTTCGTCTGGAATGTTTGGATCTGCCCCAGATTCCACCAAGCACTTGATGAATCCAATGGACCCGGTACGACTACATGCTAACAGCAGAGGAGTTGCTCCATTGAATCCAGCACCATTAACGTTAGCACCGGCCTAGTTCATGTGTTCAGCACAGTAGATTCTTTAGAAAGCACAGTAAATTCAGAATGATGCTTAAGGTATAAATGCCAGTAAACAGAATTGCAAGAGTAATGAAGTTACTGGTACAAGGAAGTAAAAAAGCATGGAGCTGGAGAAAAAAAAGAACTAAGATAATTAGCAGAAAATCTACCTGAATGAGCAACTTCATGCATTCCAATGATCCCCCCAAAAGTGAAGAAACCAACGGTGTGAAGACGATATTGGCAATCTTGTTGGGCTGAAAAATCCAAAAGAGATTTCAAACCAAAACTACCTGTTCTAATACGTCGTATTAGTAGTAACCAAACATCAACATTTGTCAGGATTGGAGCAATTAGCATTTTAGGGAACCTAAAATACAGTAAAAAACTGTCAGGATTGGAGCAATTAGCTCCCTAAAATACAGTCAAGAATCAGCATCACCGCGTCCGCGTACATCAGCGCCGTGGTTCAGCAAGACGCTGACGACGGCGGCGTGCCCCCGTGCAGCGGCGACATGCAGCGCCGTGCCGCGGGGGTTCGCCGCGCCCACGTCGGCTCCCCTGAGCAGCAGCAGCTTCGCCAGCTCGCGATCCCCTACAAGAACACGTGGAATTTGCAAGCACACGAGCACAATGAGACGCTTGGTGGTACAATGCATGGCGCACATGAACCGCGACGCGACGCGACGCGGGCGCGGCGTCGCACGTACGCACCGTTGTAGGCGGCCCAGTGGAGCGGGGTGTCGCCGCCGTTGGGGTCCGGCGTGGACGGGTCGGCGCCGCGGTCCAGGAGGTAGGCCGCCGTTGAGGTGTGCCCGAACGTGGCCGCCAGCAGCAGCGGCGTCTCACCTGCGTGCGCCGCGGCGTCGAACACGAAGCACGAAATCAGGCGCTCCGCGAGCATAGACGAGACGTGCGAGGAACGAGCGGCGGCCGCCGGCCGGGAGGGGGGCGCACCTGAGGCGGAGAGCGCGTCGACGGGGAGGCCGAGGCCCTCGAGCAGGAAGCGGCAGACGTGCGTGCGGCCGTTGGCCGCGGCCAGGTGCAGCGCCCCGCGGCCGCACCGCGATCGGACTCCGCCGGCACCCTCGCCGCCGCCAGGCGCCGCCGCGTCCACCTCCGCCGCCATCCCTAAAACGCAGCGCATGATCCAGCAGGTTAGCCAGGAACGCGGCTGTGAGGCACGCACGCAGGGCAGCACGCACGTACTAGCGAGGTGGTGGAGGTCGCCGAGGACGGCGGCGCGGAGGAGCGCGCCGGCGCAGCGGTAGTAGTAACATTGCCGCCGCCTCTCTTCCTCCCGCGCTTCGCCGCCGACGGCGACGCCGACGCCTTGGGTCACAACGAAAAGCACATGAAAAAACACGACGCGTCGCAT
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| CDS seq | ATGCGACGCGTCGTGTTTTTTCATGTGCTTTTCGTTGTGACCCAAGGCGTCGGCGTCGCCGTCGGCGGCGAAGCGCGGGAGGAAGAGAGGCGGCGGCAATGTTACTACTACCGCTGCGCCGGCGCGCTCCTCCGCGCCGCCGTCCTCGGCGACCTCCACCACCTCGCTAGGATGGCGGCGGAGGTGGACGCGGCGGCGCCTGGCGGCGGCGAGGGTGCCGGCGGAGTCCGATCGCGGTGCGGCCGCGGGGCGCTGCACCTGGCCGCGGCCAACGGCCGCACGCACGTCTGCCGCTTCCTGCTCGAGGGCCTCGGCCTCCCCGTCGACGCGCTCTCCGCCTCAGGTGAGACGCCGCTGCTGCTGGCGGCCACGTTCGGGCACACCTCAACGGCGGCCTACCTCCTGGACCGCGGCGCCGACCCGTCCACGCCGGACCCCAACGGCGGCGACACCCCGCTCCACTGGGCCGCCTACAACGGGGATCGCGAGCTGGCGAAGCTGCTGCTGCTCAGGGGAGCCGACGTGGGCGCGGCGAACCCCCGCGGCACGGCGCTGCATGTCGCCGCTGCACGGGGGCACGCCGCCGTCGTCAGCGTCTTGCTGAACCACGGCGCTGATCCCAACAAGATTGCCAATATCGTCTTCACACCGTTGGTTTCTTCACTTTTGGGGGGATCATTGGAATGCATGAAGTTGCTCATTCAGGCCGGTGCTAACGTTAATGGTGCTGGATTCAATGGAGCAACTCCTCTGCTGTTAGCATGTAGTCGTACCGGGTCCATTGGATTCATCAAGTGCTTGGTGGAATCTGGGGCAGATCCAAACATTCCAGACGAACTTGATAGGTTACCAATAGAAATTGCTGCAATCCATGCCGAACGGGAAGTCATTGAGGTTCTATTGCCATTGACCCACCAAGTACCTACTCTTCTAGATTGGAGTGTTGGTGGGATCATCAGATATGTAAAATATCCTGCTTACAAGGAATGGGCAAGAAATGCATCATGTAAAAGGAAGGATGAACTCAAACTACAAGGCAACTCCTCTTTCAACAACGAGGACTACGATGCTGCAATACTGCTATACAGCATGGTAACAACTTTTGCTCATTCCCGATTTTTCATGCTCATTTATATTCAAACAGGAGTGCTTGCTGGTTAA
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| Protein seq | MRRVVFFHVLFVVTQGVGVAVGGEAREEERRRQCYYYRCAGALLRAAVLGDLHHLARMAAEVDAAAPGGGEGAGGVRSRCGRGALHLAAANGRTHVCRFLLEGLGLPVDALSASGETPLLLAATFGHTSTAAYLLDRGADPSTPDPNGGDTPLHWAAYNGDRELAKLLLLRGADVGAANPRGTALHVAAARGHAAVVSVLLNHGADPNKIANIVFTPLVSSLLGGSLECMKLLIQAGANVNGAGFNGATPLLLACSRTGSIGFIKCLVESGADPNIPDELDRLPIEIAAIHAEREVIEVLLPLTHQVPTLLDWSVGGIIRYVKYPAYKEWARNASCKRKDELKLQGNSSFNNEDYDAAILLYSMVTTFAHSRFFMLIYIQTGVLAG |
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| Function | Ankyrin repeat, PH and SEC7 domain containing protein secG [UniProtKB/Swiss-Prot:Q54KA7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0171100 | Os01t0171100-00 | Chr01 | 3678431 | 3680909 | - | irgsp1_rep | ||
| CDS seq | ATGCGACGCGTCGTGTTTTTTCATGTGCTTTTCGTTGTGACCCAAGGCGTCGGCGTCGCCGTCGGCGGCGAAGCGCGGGAGGAAGAGAGGCGGCGGCAATGTTACTACTACCGCTGCGCCGGCGCGCTCCTCCGCGCCGCCGTCCTCGGCGACCTCCACCACCTCGCTAGGATGGCGGCGGAGGTGGACGCGGCGGCGCCTGGCGGCGGCGAGGGTGCCGGCGGAGTCCGATCGCGGTGCGGCCGCGGGGCGCTGCACCTGGCCGCGGCCAACGGCCGCACGCACGTCTGCCGCTTCCTGCTCGAGGGCCTCGGCCTCCCCGTCGACGCGCTCTCCGCCTCAGGTGAGACGCCGCTGCTGCTGGCGGCCACGTTCGGGCACACCTCAACGGCGGCCTACCTCCTGGACCGCGGCGCCGACCCGTCCACGCCGGACCCCAACGGCGGCGACACCCCGCTCCACTGGGCCGCCTACAACGGGGATCGCGAGCTGGCGAAGCTGCTGCTGCTCAGGGGAGCCGACGTGGGCGCGGCGAACCCCCGCGGCACGGCGCTGCATGTCGCCGCTGCACGGGGGCACGCCGCCGTCGTCAGCGTCTTGCTGAACCACGGCGCTGATCCCAACAAGATTGCCAATATCGTCTTCACACCGTTGGTTTCTTCACTTTTGGGGGGATCATTGGAATGCATGAAGTTGCTCATTCAGGCCGGTGCTAACGTTAATGGTGCTGGATTCAATGGAGCAACTCCTCTGCTGTTAGCATGTAGTCGTACCGGGTCCATTGGATTCATCAAGTGCTTGGTGGAATCTGGGGCAGATCCAAACATTCCAGACGAACTTGATAGGTTACCAATAGAAATTGCTGCAATCCATGCCGAACGGGAAGTCATTGAGGTTCTATTGCCATTGACCCACCAAGTACCTACTCTTCTAGATTGGAGTGTTGGTGGGATCATCAGATATGTAAAATATCCTGCTTACAAGGAATGGGCAAGAAATGCATCATGTAAAAGGAAGGATGAACTCAAACTACAAGGCAACTCCTCTTTCAACAACGAGGACTACGATGCTGCAATACTGCTATACAGCATGGTAACAACTTTTGCTCATTCCCGATTTTTCATGCTCATTTATATTCAAACAGGAGTGCTTGCTGGTTAA
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| Protein seq | MRRVVFFHVLFVVTQGVGVAVGGEAREEERRRQCYYYRCAGALLRAAVLGDLHHLARMAAEVDAAAPGGGEGAGGVRSRCGRGALHLAAANGRTHVCRFLLEGLGLPVDALSASGETPLLLAATFGHTSTAAYLLDRGADPSTPDPNGGDTPLHWAAYNGDRELAKLLLLRGADVGAANPRGTALHVAAARGHAAVVSVLLNHGADPNKIANIVFTPLVSSLLGGSLECMKLLIQAGANVNGAGFNGATPLLLACSRTGSIGFIKCLVESGADPNIPDELDRLPIEIAAIHAEREVIEVLLPLTHQVPTLLDWSVGGIIRYVKYPAYKEWARNASCKRKDELKLQGNSSFNNEDYDAAILLYSMVTTFAHSRFFMLIYIQTGVLAG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0171100 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07640 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005150 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005010 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0065100 | SBH | 0.1107725 | 0.186216 | 0.3339905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0081500 | SBH | 0.0017335 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004960 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004950 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004890 | RBH | 0.0 | 1.577045 | 0.0 |
