Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0165600 | OGI:01012330 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:3376592-3377212 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGGGGAACAACCTGAGATGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCCGGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGCGCCGTGTCCGCCGGCGAGGTGCTGGCGGCGCACCCCAACCACGTTCTGAGCCGGCCGTGCTCGTCGCAGCAGGGGGCGGCGGGGCGGATACTCATCGTGTCGCCGGAGTCGGAGCTGGAGCGCGGCGAGATCTACTTCCTCATCCCCGCCGCCTCCGTCCCCGACGCCAAGAGGAGGACGAGCACCGGCGGCGGCGGCGCCGGCCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGAGCTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTTTTATTCACCTTTTG
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| CDS seq | ATGGGGAACAACCTGAGATGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCCGGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGCGCCGTGTCCGCCGGCGAGGTGCTGGCGGCGCACCCCAACCACGTTCTGAGCCGGCCGTGCTCGTCGCAGCAGGGGGCGGCGGGGCGGATACTCATCGTGTCGCCGGAGTCGGAGCTGGAGCGCGGCGAGATCTACTTCCTCATCCCCGCCGCCTCCGTCCCCGACGCCAAGAGGAGGACGAGCACCGGCGGCGGCGGCGCCGGCCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGA
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| Protein seq | MGNNLRCCLACVLPCGALDLVRIVHLSGRVDEYGRAVSAGEVLAAHPNHVLSRPCSSQQGAAGRILIVSPESELERGEIYFLIPAASVPDAKRRTSTGGGGAGRGHHVRSKSEGSAVAADRLGSPAGSASPETTRMMRAQKQQHQHRRRMSTGSHASPWQPHLSCITEDP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0165600 | Os01t0165600-00 | Chr01 | 3376592 | 3377212 | + | irgsp1_rep | ||
| CDS seq | ATGGGGAACAACCTGAGATGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCCGGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGCGCCGTGTCCGCCGGCGAGGTGCTGGCGGCGCACCCCAACCACGTTCTGAGCCGGCCGTGCTCGTCGCAGCAGGGGGCGGCGGGGCGGATACTCATCGTGTCGCCGGAGTCGGAGCTGGAGCGCGGCGAGATCTACTTCCTCATCCCCGCCGCCTCCGTCCCCGACGCCAAGAGGAGGACGAGCACCGGCGGCGGCGGCGCCGGCCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGA
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| Protein seq | MGNNLRCCLACVLPCGALDLVRIVHLSGRVDEYGRAVSAGEVLAAHPNHVLSRPCSSQQGAAGRILIVSPESELERGEIYFLIPAASVPDAKRRTSTGGGGAGRGHHVRSKSEGSAVAADRLGSPAGSASPETTRMMRAQKQQHQHRRRMSTGSHASPWQPHLSCITEDP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0165600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0165200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004430 | RBH | 0.0 | 2.674037 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004690 | RBH | 0.0 | 0.0 | 0.771675 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004340 | RBH | 0.0 | 0.143044 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004570 | RBH | 0.0 | 4.467140 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0059800 | RBH | 0.0615065 | 0.341774 | 0.2525525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004490 | RBH | 0.0 | 0.282294 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0060700 | RBH | 0.099487 | 0 | 0.2728795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004340 | RBH | 0.0 | 0.198220 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004560 | RBH | 0.0 | 10.300566 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004530 | RBH | 0.0 | 0.763666 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004550 | RBH | 0.0 | 1.772841 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004440 | RBH | 0.0 | 1.452026 | 0.0 |
