Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os01g0117200 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:969340-973327 | ||||||||
Gene Symbol | RLCK4, OsRLCK4, RLCK16, OsRLCK16 | ||||||||||
DNA seq | GGGGGGAGTAGTTTATTCATAGTCATTTTACATACACGTAAAACAACTTCAATCTGCTAGGTAAATAAGTTCAAGCTGGACTAGCTTACAATGGTCTTGTACTCCATCTAGTGTAAAATTAATATTAGTGAACGCTAATTGCTAGATTCAAATACTTCGCTCATAGCCTAGCAAGCAACTACTATCTAGTTGAGTTATTCCATCCACATCCTCCTCCTCTGAGATCGCAGTCAACTCGGAGGAGTAAAGGCAAATTGAATCCATCACAGGCACAGGAGGAGGCGGCGTGCTATCTCCATCGCAGAAAAATGGCCTCGGAGGCACTTGCAACGCATCAACATCCCCTTCGAGCATCTCTATGACCTCACTCATTGTTGGCCGATCATATGATTTCATCTGGATGCACCAAAACACAACAAGCCACAGCTTCCTCTCTTTCTCATGCATGTCAATAGCACTAGATATCTCATCAACTTGTTGATCTACTATAAGCTGGTCATACACCCATGCTGGGTAGTATGCCCTACTCGAATTTGAGTTTGCATTTGGGTCTGCGTTCTTTCTACCTCCAGCCATCTCAAGCAGCAGCATTCCAAAGCTATAAACATCGGATTTGCTGGATATGACGCCAAAACTACGACATGCCATCTCTGGAGCCATATACCCAAATGTTCCTCGTAAAGCCCTATCTGACACAAAGCTCTTCTCCCTTGGGTACAATTTTGCAAGGCCGAAATCAGCGACCTTTGGAATAAAGTTGTCATCCAGAAGGATGTTGTCTGGCTTGATGTCAAAGTGTAGAATCTGCATCTCGCACCCTTGGTGCAGGTAGTTGATCCCTCTAGCAATGCCCAGAGCAATCTCATTGAGCTTGTCCCACGAGAAGCTTCTCTCGGATGAGAAGATATACCTGTTTAAAGATCCTCTAGGCATGTATTCATAAACCAGAGCTCTTCTCATTTCTTCGGAGCAGAACCCCACAAGACGAACCACGTTGATGTGGTGGATTCTGCCTATGGTGGCAACTTCACTGATGAAGTCTTCTCCGTTGCAGTCGGATTTTCCATCCAACATCTTGATGGCAACATGGATGTCACCAGGGAGAAGCACACCCTTGTATACAGATCCGTATCCTCCTTGGCCCAACTTATCCCTGAAATGGCTTGTGATTGCTATGATGTCTGTGTAGGCGTACCTCTTTGGACCTAGCATCTCTTGCATCCGGAGGAACTTCTCCACTGCATCGATCGCTATCCTTGTTTTCCAGTACTTGTGGGCAAGAAATGTGAGTACCACCAGCGGTGCCAACACGAACCTGCATAGAACTTTTCAAACAAGTCGGCAGCCATATATGAGTTAGATTATACTACGTACTCCCTCCGTCCCATAAAAAACCAACCTAGTACCAGATATGACATATCCTAATACTACGAGTCTAAACATACATACGTCCAGAATTATCATACTATAATATGTCACATCCGATTCTCACTGGTGGAGAAACCATCTTTAGTCGGTCGACCAGATTTCACAATAGTCCCGGCTGTATTAAAAACCGGGACTAAAAACATCTTTAGTCCCGGTTTGAAAGCTTCATGCTACTTTTCAATCTTTAGTCCCGGTTGATGATCCATTTATAGTCCCGGTTGGTGTTACCAACCGGGAAAAAAGATCGTCATACGCTTTACTCCCGGTTGGTGTTACTAACCGGGACTAAAGATCTATCTTTAGTCCCGGTTGGTACCAACCGGGAAAAAAGATCGATGCGGAGATCGGAGAGGCATGCGCAACCGGGAAAAAAGATCGACGCAGAGATCGGAGAGGCATGCGCAATTGGATCGAGGTATTTCCTTCTCTCCTTTAACTCCTCTCCTCCTCTCCTCAACTTTATCTCTTCCTCTCCTCAACCTTATCTCTTCCTCTCCTCAACCCTTCCTCTCCTTCTCCTCTCCTCTCTAACAGACCGATGGCAGGTCGGCCGCGGAGGCCCGGCCGGCGCGGCGCGCGGTGAGGCGGCGGCCGGCGCGAGGGCGGCGGGGCGCGGCGGGCCTGCCGGCCGGCGCGGCGGCGACGCGTCGCGCGGTGAGGCGGCGGCCTGCGGCGGCAGCCGGCGTGAGGGCGGCGGGGAGCGGAGGCCCGGCGCGGCGGCGGCTGGCGGCCGCGCGACGGCGGGCGCGACGGGCCGGCCGGCCGGCACGGCGGCGGCTGGAGGCCGCGCGGCGGGCGGCGCATCGCGCGGTGAGACGGCGGCCTGCGGCGGCGGACGGCGCGAGGGCGGCGGGGCGCGGAGGGCCGGCCGGCGAGGCGGTGGATTTTTTTTTTTTAAGAATCTGAAATTGTTGTATGATGTATTTGATTGGATCTGATTGTTGTGTGATGTATTTGATTTGTGTGTGATGTGAATATTTGATAATTTTGTAGAAGTTGTGATGTAATTTTTTTTTGAGATTTTGTGATGTATTTGAGTATTTGAGATGATCGATTGTGGATTTGGAAGCAATTTGAGAATGATTGATTTGTGATTTTGGGAACGGGATTGATTTGTGATTTTGATTAAAAACAATGAAGAAAAGAAAATAATAAAGAGCAACCGGATCTAGTCTTTTTAGTCCCGGTAAAAATGGATTTTTACTCCCGGTTTTTTCACCCGGGACTAAAGATCGCTATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTACAGGGGGGTTACGAACCGGGAGTAAAAACCCTTTCTCCACCAGTGTCTATATTTGTTTTTTATGGGACGGAGGAAATACAATATAAAGTCGTGTCATGGATGTGATGATTATATAAATGCGGGTAATTAATTGACACGTACCGAAAAGTAGCTTGGTGACATCAATAGCAGATACTATGGTTATCACAACCGAAAATAACTTTATTGTGTAGTCGTGGTTAGTAGATACGCATTGTACGAAGTGTATCTCAGTCCAGAAAAGAGCGCGAGTTAGATGCGGGATGCTTGCTCCAGATATCTGATCCTTGAAGTAGCTGAAAATTACACCATTAATTATGTAGCTTGAACGGGATAAATGAGGGGGAACGTACACAGACAAAACCAAACTCTGGAGGAAGTGGAAGTAATATAGTATACAGGAAGCAGCAGACTCACCTCATTGAATTGTTTAGGCATCTCTCGACGATCGTGGGAGCCCTCTGGTCGTTATTATAAAGGGGAAAATTAACGCGGAATCCCTTCCTTATGAATCCCACGATATCTCTGTAACTTGCACTTTGTAGTACATTTGACATGATATCATCATCATATGACCCTGGTTGATAGACGTAATCAAAGGGAATCATCCCCAAATATCGACAGGAAGGTTGAAGCCTTTTGACAGGACAGCAACCATAATCATCATAAATATAGACATACACATAAGGGAATGAATTGTTCCCACTCAGGCAAGTAACGGGCTTGTACCGGCTATCATTCGTTATTGCTCGGGAACAATTCACAAAGCATGCCCAAGTGTCTGAAGCAGTGACCAAATCTTTAAAACCATAAGAATCGATTGAAGACAGATCAGACCAGTAAATCATGTAAGGAAGGTGATCAGAGCGAGGAAGAGGGCAGCTGGTGCCGTTTGTATCATCATCCAGCTGCATGGTGGCATCCACAACCAAGAAGTTCTCACGAGTATAGTTGATACTAATCACATAGTACTTTCTTGTGTTGATATGGATGGTGGCCTTGCCCCTGCTGCAGGAGAGGTTGTACCATGGACGAGGAGTAGAAACGCACTGACGTGAATCGCCTTGGAGACGGAAAGGGTAGGATATGTTGCCAAGATCACCACAGGAGAAAGGAAGACACTCCTGGGGGTTTGGCCCTGCAGCAACTGCAAGCATACAGCAGATAGTTGTTAAAGCGGCTTTCTGCAAGGGGCCGTACGTAGTAGAACGACGGAATATTGCAATGGAGTTGGCCATGCATTCATGCAACTGCCAAGCT
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CDS seq | ATGGCCAACTCCATTGCAATATTCCGTCGTTCTACTACGTACGGCCCCTTGCAGAAAGCCGCTTTAACAACTATCTGCTGTATGCTTGCAGTTGCTGCAGGGCCAAACCCCCAGGAGTGTCTTCCTTTCTCCTGTGGTGATCTTGGCAACATATCCTACCCTTTCCGTCTCCAAGGCGATTCACGTCAGTGCGTTTCTACTCCTCGTCCATGGTACAACCTCTCCTGCAGCAGGGGCAAGGCCACCATCCATATCAACACAAGAAAGTACTATGTGATTAGTATCAACTATACTCGTGAGAACTTCTTGGTTGTGGATGCCACCATGCAGCTGGATGATGATACAAACGGCACCAGCTGCCCTCTTCCTCGCTCTGATCACCTTCCTTACATGATTTACTGGTCTGATCTGTCTTCAATCGATTCTTATGGTTTTAAAGATTTGGTCACTGCTTCAGACACTTGGGCATGCTTTGTGAATTGTTCCCGAGCAATAACGAATGATAGCCGGTACAAGCCCGTTACTTGCCTGAGTGGGAACAATTCATTCCCTTATGTGTATGTCTATATTTATGATGATTATGGTTGCTGTCCTGTCAAAAGGCTTCAACCTTCCTGTCGATATTTGGGGATGATTCCCTTTGATTACGTCTATCAACCAGGGTCATATGATGATGATATCATGTCAAATGTACTACAAAGTGCAAGTTACAGAGATATCGTGGGATTCATAAGGAAGGGATTCCGCGTTAATTTTCCCCTTTATAATAACGACCAGAGGGCTCCCACGATCGTCGAGAGATGCCTAAACAATTCAATGAGCTACTTCAAGGATCAGATATCTGGAGCAAGCATCCCGCATCTAACTCGCGCTCTTTTCTGGACTGAGATACACTTCGTACAATGCGTATCTACTAACCACGACTACACAATAAAGTTATTTTCGGTTGTGATAACCATAGTATCTGCTATTGATGTCACCAAGCTACTTTTCGTTCTATGCAGGTTCGTGTTGGCACCGCTGGTGGTACTCACATTTCTTGCCCACAAGTACTGGAAAACAAGGATAGCGATCGATGCAGTGGAGAAGTTCCTCCGGATGCAAGAGATGCTAGGTCCAAAGAGGTACGCCTACACAGACATCATAGCAATCACAAGCCATTTCAGGGATAAGTTGGGCCAAGGAGGATACGGATCTGTATACAAGGGTGTGCTTCTCCCTGGTGACATCCATGTTGCCATCAAGATGTTGGATGGAAAATCCGACTGCAACGGAGAAGACTTCATCAGTGAAGTTGCCACCATAGGCAGAATCCACCACATCAACGTGGTTCGTCTTGTGGGGTTCTGCTCCGAAGAAATGAGAAGAGCTCTGGTTTATGAATACATGCCTAGAGGATCTTTAAACAGGTATATCTTCTCATCCGAGAGAAGCTTCTCGTGGGACAAGCTCAATGAGATTGCTCTGGGCATTGCTAGAGGGATCAACTACCTGCACCAAGGGTGCGAGATGCAGATTCTACACTTTGACATCAAGCCAGACAACATCCTTCTGGATGACAACTTTATTCCAAAGGTCGCTGATTTCGGCCTTGCAAAATTGTACCCAAGGGAGAAGAGCTTTGTGTCAGATAGGGCTTTACGAGGAACATTTGGGTATATGGCTCCAGAGATGGCATGTCGTAGTTTTGGCGTCATATCCAGCAAATCCGATGTTTATAGCTTTGGAATGCTGCTGCTTGAGATGGCTGGAGGTAGAAAGAACGCAGACCCAAATGCAAACTCAAATTCGAGTAGGGCATACTACCCAGCATGGGTGTATGACCAGCTTATAGTAGATCAACAAGTTGATGAGATATCTAGTGCTATTGACATGCATGAGAAAGAGAGGAAGCTGTGGCTTGTTGTGTTTTGGTGCATCCAGATGAAATCATATGATCGGCCAACAATGAGTGAGGTCATAGAGATGCTCGAAGGGGATGTTGATGCGTTGCAAGTGCCTCCGAGGCCATTTTTCTGCGATGGAGATAGCACGCCGCCTCCTCCTGTGCCTGTGATGGATTCAATTTGCCTTTACTCCTCCGAGTTGACTGCGATCTCAGAGGAGGAGGATGTGGATGGAATAACTCAACTAGATAGTAGTTGCTTGCTAGGCTATGAGCGAAGTATTTGA
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Protein seq | MANSIAIFRRSTTYGPLQKAALTTICCMLAVAAGPNPQECLPFSCGDLGNISYPFRLQGDSRQCVSTPRPWYNLSCSRGKATIHINTRKYYVISINYTRENFLVVDATMQLDDDTNGTSCPLPRSDHLPYMIYWSDLSSIDSYGFKDLVTASDTWACFVNCSRAITNDSRYKPVTCLSGNNSFPYVYVYIYDDYGCCPVKRLQPSCRYLGMIPFDYVYQPGSYDDDIMSNVLQSASYRDIVGFIRKGFRVNFPLYNNDQRAPTIVERCLNNSMSYFKDQISGASIPHLTRALFWTEIHFVQCVSTNHDYTIKLFSVVITIVSAIDVTKLLFVLCRFVLAPLVVLTFLAHKYWKTRIAIDAVEKFLRMQEMLGPKRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGDIHVAIKMLDGKSDCNGEDFISEVATIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLNRYIFSSERSFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPDNILLDDNFIPKVADFGLAKLYPREKSFVSDRALRGTFGYMAPEMACRSFGVISSKSDVYSFGMLLLEMAGGRKNADPNANSNSSRAYYPAWVYDQLIVDQQVDEISSAIDMHEKERKLWLVVFWCIQMKSYDRPTMSEVIEMLEGDVDALQVPPRPFFCDGDSTPPPPVPVMDSICLYSSELTAISEEEDVDGITQLDSSCLLGYERSI |
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Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os01g0117200 | Os01t0117200-01 | Chr01 | 969340 | 973327 | - | irgsp1_rep | ||
CDS seq | ATGGCCAACTCCATTGCAATATTCCGTCGTTCTACTACGTACGGCCCCTTGCAGAAAGCCGCTTTAACAACTATCTGCTGTATGCTTGCAGTTGCTGCAGGGCCAAACCCCCAGGAGTGTCTTCCTTTCTCCTGTGGTGATCTTGGCAACATATCCTACCCTTTCCGTCTCCAAGGCGATTCACGTCAGTGCGTTTCTACTCCTCGTCCATGGTACAACCTCTCCTGCAGCAGGGGCAAGGCCACCATCCATATCAACACAAGAAAGTACTATGTGATTAGTATCAACTATACTCGTGAGAACTTCTTGGTTGTGGATGCCACCATGCAGCTGGATGATGATACAAACGGCACCAGCTGCCCTCTTCCTCGCTCTGATCACCTTCCTTACATGATTTACTGGTCTGATCTGTCTTCAATCGATTCTTATGGTTTTAAAGATTTGGTCACTGCTTCAGACACTTGGGCATGCTTTGTGAATTGTTCCCGAGCAATAACGAATGATAGCCGGTACAAGCCCGTTACTTGCCTGAGTGGGAACAATTCATTCCCTTATGTGTATGTCTATATTTATGATGATTATGGTTGCTGTCCTGTCAAAAGGCTTCAACCTTCCTGTCGATATTTGGGGATGATTCCCTTTGATTACGTCTATCAACCAGGGTCATATGATGATGATATCATGTCAAATGTACTACAAAGTGCAAGTTACAGAGATATCGTGGGATTCATAAGGAAGGGATTCCGCGTTAATTTTCCCCTTTATAATAACGACCAGAGGGCTCCCACGATCGTCGAGAGATGCCTAAACAATTCAATGAGCTACTTCAAGGATCAGATATCTGGAGCAAGCATCCCGCATCTAACTCGCGCTCTTTTCTGGACTGAGATACACTTCGTACAATGCGTATCTACTAACCACGACTACACAATAAAGTTATTTTCGGTTGTGATAACCATAGTATCTGCTATTGATGTCACCAAGCTACTTTTCGTTCTATGCAGGTTCGTGTTGGCACCGCTGGTGGTACTCACATTTCTTGCCCACAAGTACTGGAAAACAAGGATAGCGATCGATGCAGTGGAGAAGTTCCTCCGGATGCAAGAGATGCTAGGTCCAAAGAGGTACGCCTACACAGACATCATAGCAATCACAAGCCATTTCAGGGATAAGTTGGGCCAAGGAGGATACGGATCTGTATACAAGGGTGTGCTTCTCCCTGGTGACATCCATGTTGCCATCAAGATGTTGGATGGAAAATCCGACTGCAACGGAGAAGACTTCATCAGTGAAGTTGCCACCATAGGCAGAATCCACCACATCAACGTGGTTCGTCTTGTGGGGTTCTGCTCCGAAGAAATGAGAAGAGCTCTGGTTTATGAATACATGCCTAGAGGATCTTTAAACAGGTATATCTTCTCATCCGAGAGAAGCTTCTCGTGGGACAAGCTCAATGAGATTGCTCTGGGCATTGCTAGAGGGATCAACTACCTGCACCAAGGGTGCGAGATGCAGATTCTACACTTTGACATCAAGCCAGACAACATCCTTCTGGATGACAACTTTATTCCAAAGGTCGCTGATTTCGGCCTTGCAAAATTGTACCCAAGGGAGAAGAGCTTTGTGTCAGATAGGGCTTTACGAGGAACATTTGGGTATATGGCTCCAGAGATGGCATGTCGTAGTTTTGGCGTCATATCCAGCAAATCCGATGTTTATAGCTTTGGAATGCTGCTGCTTGAGATGGCTGGAGGTAGAAAGAACGCAGACCCAAATGCAAACTCAAATTCGAGTAGGGCATACTACCCAGCATGGGTGTATGACCAGCTTATAGTAGATCAACAAGTTGATGAGATATCTAGTGCTATTGACATGCATGAGAAAGAGAGGAAGCTGTGGCTTGTTGTGTTTTGGTGCATCCAGATGAAATCATATGATCGGCCAACAATGAGTGAGGTCATAGAGATGCTCGAAGGGGATGTTGATGCGTTGCAAGTGCCTCCGAGGCCATTTTTCTGCGATGGAGATAGCACGCCGCCTCCTCCTGTGCCTGTGATGGATTCAATTTGCCTTTACTCCTCCGAGTTGACTGCGATCTCAGAGGAGGAGGATGTGGATGGAATAACTCAACTAGATAGTAGTTGCTTGCTAGGCTATGAGCGAAGTATTTGA
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Protein seq | MANSIAIFRRSTTYGPLQKAALTTICCMLAVAAGPNPQECLPFSCGDLGNISYPFRLQGDSRQCVSTPRPWYNLSCSRGKATIHINTRKYYVISINYTRENFLVVDATMQLDDDTNGTSCPLPRSDHLPYMIYWSDLSSIDSYGFKDLVTASDTWACFVNCSRAITNDSRYKPVTCLSGNNSFPYVYVYIYDDYGCCPVKRLQPSCRYLGMIPFDYVYQPGSYDDDIMSNVLQSASYRDIVGFIRKGFRVNFPLYNNDQRAPTIVERCLNNSMSYFKDQISGASIPHLTRALFWTEIHFVQCVSTNHDYTIKLFSVVITIVSAIDVTKLLFVLCRFVLAPLVVLTFLAHKYWKTRIAIDAVEKFLRMQEMLGPKRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGDIHVAIKMLDGKSDCNGEDFISEVATIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLNRYIFSSERSFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPDNILLDDNFIPKVADFGLAKLYPREKSFVSDRALRGTFGYMAPEMACRSFGVISSKSDVYSFGMLLLEMAGGRKNADPNANSNSSRAYYPAWVYDQLIVDQQVDEISSAIDMHEKERKLWLVVFWCIQMKSYDRPTMSEVIEMLEGDVDALQVPPRPFFCDGDSTPPPPVPVMDSICLYSSELTAISEEEDVDGITQLDSSCLLGYERSI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117200 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02780 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0114400 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001310 | RBH | 0.351784 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001140 | SBH | 0.956421 | 0.000000 | 0.853077 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001320 | RBH | 3.609003 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001210 | RBH | 0.000000 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001270 | RBH | 1.961982 | 3.915113 | 3.093100 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | SBH | 1.6942795 | 5.724617 | 3.7314985 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001270 | SBH | 0.0 | 0.0 | 0.358496 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001110 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001370 | RBH | 0.501064 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | SBH | 0.287462 | 2.850632 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001190 | SBH | 0.000000 | 0.000000 | 0.057889 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001160 | SBH | 0.084394 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001370 | RBH | 1.798001 | 0.0 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001160 | SBH | 0.000000 | 0.000000 | 0.000000 |