Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0115900 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:865938-869298 | ||||||||
| Gene Symbol | RLCK6, OsRLCK6, - | ||||||||||
| DNA seq | CACCTCCATCTCATCTCCATTACACTGCATGGACTTCACCAACCTTCTTATCACGGTGCTCCTCCTACTCGCTCCTCTGAAATACAAATCTGATGTTGCCACAGCAAGTGATGATGAAGACTTCTTCAAGACTTGTTCATCACATCGGTGCAGCAAGCATGGACCAGAGATCAGGTACCCGTTCCGGCTTTCGACACAACCTCCATCATGCGGCGCACCTGGGATGCAATTATCATGCTCTGGACAAGACACCATCCTGGATCACCCTGTTCTTGGTTCCTGCAAAGTGACAATGATATATTACAGGCATGTTATCATGAACGCCATCCCACTTGTAGATTCCTCACCTCATTGCCTACTTCACAAGTTTATATCAGTAAATCAATCAACTGCTGTGTACAGACCTCACACTTTAAAAGCTGCAAGTCTAGTAGGTTGTTCAAGAGATTCCATAGACACAAACCAATATAATAGTATAGTTGGCCCAACCTCTTGCCTCAGCCTCGCTAACAACGCAAGCCAGTTCTGGTATTTGGCATATCCCTATGAATATATGTCTATTCTTCCATTGGGCTGCACAATTGTTTCCAAAGACATCCCAATGCCCTACAGTTACGACAAAAATGGTCCAAACTTTGACATCTCAATCTTCACCGAAACAGCAAAAAGAGTCATCAGCACTGGTGAGACTGTATTCACTTGGTACTCAAGTAACGTTACTAGTATTTGCCAACAATGTGAACATGAAGGTCGGCGTTGTGGCTTTAGCTCTCAAAGGGATCAAGCATTCTGCCAGCATCATAGTATGTCTCTTTCTCAAGTATAAATTCAGTTTCACTATGATGACTTGTTTTAGTTTGGAATTCTCACTTCTCCATCTATTACATCTCTTATTTCTCGAGTATTCAGTTTTCAAACTACCCAGGATATTTTTCACAAATAGTCAAACTATCCAGCAAACTGTGAATCAGCCAAAGGCTAGCTTGGACGAACATTTTGGTTCTAGGTTCACAACTGCAATTTTTCTCAAAGAAAATTTCATCAAGAGACGATAATGTCTGATCATTATGAAAATCAATTTTTTTTTGTAAAATTCTCATAGAAAAGGTTATAAGCAATTGCAGCACATTTTAGCATATAGCAATGATCTAAAGAGCAAGCTTTATTTGTATTACTCTAGACATTGGTATTAACTTAGAACATTAAATTAGATTCATATGGTTCAAATTTACTAGTTTGGAATACTGTAATAGCTAATTGAACATTAAAGTTAGATGCAAATGGCACCAATTTACTAGTTTGGATTACTGTGGGAGGTACTACGGCGAGAGTAGTATCTCAATTAGACCTTTTGATGCTAGAGATGCACTTGATAGTGCAGTGGCAAGGGGTGTATGGTTTTAACCCCGAGGTCCCGTGTTCAATCCCTAACACGTTCACAATTTCTTCTTAAAAAAGTTTGGAGGGACGTCTCTCCCTCCAAATCTCCTTTTTTTTAGACCTTTTGGTGCTAACACCATAGTCCTGATTGTTAGAAAGTTGCACCCATCGAGTAATCAAGAATGTACCAGCATAATTTACAGCATTAACAAGTTCCCACAGTTTTAACAGGGTAGAAACCAGAACATATCCATCTTACACAACGTTGATACGAAAGTTGTGCACATGCATATTTCCAGCGATGCTCTGTAAGATTATTGAATTAGGTAGTTTCTTCCTCCTAGGCACTATAGATAAAAATGTTTTACTTCTATGGTTAAGACAAGAAGCCTCCTTATCCTATTTCTATATGACAATGCCAAATAAACAAGCCATCTAACAATCAGGAATTAATTGTTTCTAGGAAAAATTATAGGTGTTTCTCTCGATTTATTTCATCCATAAATCATGTCATAACTAATAACCTTTCTTCCTATGTCCAGGTCCGCGTGTCACAATCATTGCAGGTAAGCAACTAATTTTTTTTCTTCATTCTTCCTGAACTGCTCATTCTGTAGAATCATTGCCTTTTCTCCAAGTGCAACTAGCTGAATTTCTCTCTTTTTTTACTCAGTAACATCATCTGTAGGCACATTTATAGTTCTTTCATTAATTGTGGCCACTGCACTCTACATCTCCTTGAAGTCAAGGTACAATGAAGAGATACATTTGAAAGTCGAAATGTTTCTGAAGACATATGGCACATCAAAACCCACAAGGTACACATTCTCCGAAGTTAAGAAGATAGCAAGGCGGTTCAAGGACAAATTGGGCCATGGTGCATTTGGAACTGTATATAAAGGTGAGCTACTGAATGGAGTTCCTGTGGCTGTTAAGATGCTAGAAAACTCTGTAGGAGAGGGACAAGAGTTCATCAATGAAGTCGCAACCATTGGGCGAATTCACCATGCAAACATTGTCCGCCTCCTAGGCTTTTGCTCTGAAGGAACACGGCAGGCTTTAATATATGAATTCATGCCCAATGAATCATTGGAGAAATATATATTCCCACATGGTTCTAATATTTCAAGAGAACTTCTAGTACCAGACAAAATGCTAGATATTGCATTAGGCATCGCCCGAGGAATGGAGTACCTGCACCAAGGGTGCAATCAGCGCATTCTCCATTTTGACATCAAGCCTCACAACATACTGTTGGACTACAGCTTCAATCCAAAGATTTCAGACTTTGGGCTTGCCAAGCTATGTGCAAGAGATCAAAGCATTGTCACATTGACTGCAGCAAGAGGCACAATGGGCTATATTGCACCAGAACTATATTCTCGGAATTTTGGAGCAATTTCATATAAGTCGGATGTCTACAGCTTTGGCATGCTGGTGTTAGAAATGGTGAGTGGGAGGAGGAACACAGAACCAACCGTTGAGAACCAAAATGAGTTCTACTTTCCTGAGTGGATATATGAGAGAGTTATGAATGGGCAGGACCTGGTGCTTACCATGGAGACAACACAAGGCGAGAAAGAAATGGTGAGACAGCTAGCTATTGTAGCGTTATGGTGCATTCAGTGGAACCCAAAAAACCGGCCCTCAATGACAAAGGTGGTAAACATGTTGACGGGGAGGTTGCAGAATCTGCAGGTGCCCCCTAAGCCCTTTACATCGTCTCAAAATCAACTTGTGATTTAGATCATGAGACCGCATCGCCATGGTTTGGACTTTGGAGACCAGCAAAGCAATGGAGCTTGGCCAGCATTTCCTATAAAAAGGCATCACCATGGTTTGGTGCCTGAGTGAGAGATATGCTTAATCCACATATCAGAAAATAGTTCTTAGTGAGCTGAAGCATGCACATATAGTGTTTGATTATTAAACTAAACTGGGCAACCAGATATATGATATATCACCATGTACTCTTGTAATT
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| CDS seq | ATGGACTTCACCAACCTTCTTATCACGGTGCTCCTCCTACTCGCTCCTCTGAAATACAAATCTGATGTTGCCACAGCAAGTGATGATGAAGACTTCTTCAAGACTTGTTCATCACATCGGTGCAGCAAGCATGGACCAGAGATCAGGTACCCGTTCCGGCTTTCGACACAACCTCCATCATGCGGCGCACCTGGGATGCAATTATCATGCTCTGGACAAGACACCATCCTGGATCACCCTGTTCTTGGTTCCTGCAAAGTGACAATGATATATTACAGGCATGTTATCATGAACGCCATCCCACTTGTAGATTCCTCACCTCATTGCCTACTTCACAAGTTTATATCAGTAAATCAATCAACTGCTGTGTACAGACCTCACACTTTAAAAGCTGCAAGTCTAGTAGGTTGTTCAAGAGATTCCATAGACACAAACCAATATAATAGTATAGTTGGCCCAACCTCTTGCCTCAGCCTCGCTAACAACGCAAGCCAGTTCTGGTATTTGGCATATCCCTATGAATATATGTCTATTCTTCCATTGGGCTGCACAATTGTTTCCAAAGACATCCCAATGCCCTACAGTTACGACAAAAATGGTCCAAACTTTGACATCTCAATCTTCACCGAAACAGCAAAAAGAGTCATCAGCACTGGTGAGACTGTATTCACTTGGTACTCAAGTAACGTTACTAGTATTTGCCAACAATGTGAACATGAAGGTCGGCGTTGTGGCTTTAGCTCTCAAAGGGATCAAGCATTCTGCCAGCATCATAGTATGTCTCTTTCTCAAGTATAA
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| Protein seq | MDFTNLLITVLLLLAPLKYKSDVATASDDEDFFKTCSSHRCSKHGPEIRYPFRLSTQPPSCGAPGMQLSCSGQDTILDHPVLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQSTAVYRPHTLKAASLVGCSRDSIDTNQYNSIVGPTSCLSLANNASQFWYLAYPYEYMSILPLGCTIVSKDIPMPYSYDKNGPNFDISIFTETAKRVISTGETVFTWYSSNVTSICQQCEHEGRRCGFSSQRDQAFCQHHSMSLSQV |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0115900 | Os01t0115900-00 | Chr01 | 865938 | 869298 | + | irgsp1_rep | ||
| CDS seq | ATGGACTTCACCAACCTTCTTATCACGGTGCTCCTCCTACTCGCTCCTCTGAAATACAAATCTGATGTTGCCACAGCAAGTGATGATGAAGACTTCTTCAAGACTTGTTCATCACATCGGTGCAGCAAGCATGGACCAGAGATCAGGTACCCGTTCCGGCTTTCGACACAACCTCCATCATGCGGCGCACCTGGGATGCAATTATCATGCTCTGGACAAGACACCATCCTGGATCACCCTGTTCTTGGTTCCTGCAAAGTGACAATGATATATTACAGGCATGTTATCATGAACGCCATCCCACTTGTAGATTCCTCACCTCATTGCCTACTTCACAAGTTTATATCAGTAAATCAATCAACTGCTGTGTACAGACCTCACACTTTAAAAGCTGCAAGTCTAGTAGGTTGTTCAAGAGATTCCATAGACACAAACCAATATAATAGTATAGTTGGCCCAACCTCTTGCCTCAGCCTCGCTAACAACGCAAGCCAGTTCTGGTATTTGGCATATCCCTATGAATATATGTCTATTCTTCCATTGGGCTGCACAATTGTTTCCAAAGACATCCCAATGCCCTACAGTTACGACAAAAATGGTCCAAACTTTGACATCTCAATCTTCACCGAAACAGCAAAAAGAGTCATCAGCACTGGTGAGACTGTATTCACTTGGTACTCAAGTAACGTTACTAGTATTTGCCAACAATGTGAACATGAAGGTCGGCGTTGTGGCTTTAGCTCTCAAAGGGATCAAGCATTCTGCCAGCATCATAGTATGTCTCTTTCTCAAGTATAA
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| Protein seq | MDFTNLLITVLLLLAPLKYKSDVATASDDEDFFKTCSSHRCSKHGPEIRYPFRLSTQPPSCGAPGMQLSCSGQDTILDHPVLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQSTAVYRPHTLKAASLVGCSRDSIDTNQYNSIVGPTSCLSLANNASQFWYLAYPYEYMSILPLGCTIVSKDIPMPYSYDKNGPNFDISIFTETAKRVISTGETVFTWYSSNVTSICQQCEHEGRRCGFSSQRDQAFCQHHSMSLSQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0115900 | RBH | 1.147913 | 0.795163 | 0.884627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02600 | RBH | 1.091856 | 0.763785 | 0.061015 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0115600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001110 | SBH | 1.344002 | 0.000000 | 1.964355 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001080 | SBH | 0.069754 | 0.307502 | 0.332710 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001220 | RBH | 0.816920 | 1.526332 | 0.302191 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001100 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001150 | SBH | 3.586691 | 2.446679 | 2.675282 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0015700 | RBH | 5.343998 | 2.5004195 | 3.522977 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001070 | RBH | 0.206319 | 0.096424 | 0.315710 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015600 | RBH | 3.1836015 | 4.0278955 | 3.1884795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001060 | RBH | 0.998163 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001110 | SBH | 0.376847 | 2.225975 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001080 | RBH | 5.615984 | 25.911140 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001060 | SBH | 0.348942 | 0.511162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001090 | SBH | 0.419632 | 1.189147 | 0.789629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001030 | RBH | 2.767921 | 5.217477 | 3.209049 |
