Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g43490 | OGI:12069120 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26979991-26981087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATAGCGAGCTCCCTAATCATGCCCAGATAATTGGTACTATTAATCATGCTGAGACAATCATATTTTTACTGGCAAAGATTATATATATACTACTATCAATCAAGCTAGCTCCGGAAAAACCAAGGAGTAAAAGGGAATTCGATGGAATTTTATTCATCCAAATTATCGAAGAGAGATCATCGAGTGCATGCGTTGCCATGTCAATTATTGTACTAGTAGTGATCGATCAAGGCACACGAAATTAATTAAGCCGATAAGCTTAATTAATTAATTAAGCAGAGGCGATCTCGTCGTCCTCGTCACCGGCCGTCACGCCGCTCGTCGGCGGGCAGAAGTCGACGCGGTAGTTGGTGCCAGCGGGGCAGGTGAAGGTGCTGGTCTGGTCGTCCTTGGCGTAGCTGTAGGCGTCGGGGCAGAGCCCCTTGAAGAACATGGAGTAGCTCGTCGGCGGGCACACGTGCTCGAACCGTCCCCGGCAGCAGTAGGTGTCGCCGCCGAACTTGCCGCACGCGCTGGCGCAGCCGCCGGGGACACGGAGCTCGGGGAGGCACCTCGCCGTGATGTCCACGGCGCAGCTCGGCCCGCGCCCCTTGCTGCACCGGGCGCCACCGCCGTTCGCCGGCTGGAAGCTCACCGGCACGTTGAACCCGTCGATGAGCGACAGGTCGAGGAAGTCGTCGCCGCCGGCGCCGGGGCGGCCGAGCGTGTACTCGGCCAGCGTGGTGGGCGGCTCGCCGGAGACGGCGCAGGACAGCGCGCCGGCGCAGTCGCCCGTGGCGCAGCGGCCGCGGCCGGCGCCGTCGAAGGAGCAGCCGGTGCGCGGCCAGATCCTGGCGGCCGGTGTGCCGGCGGCGACGCTGATCGACCACGACTGCCCCGGGTCGAGCCGGGCGCCGCCGCCCGGGAGCGCGCCCGGCCACACCGTGTACGAGCAGCGGTTCACCATGGTGATGGTCGCCGCGTCGACGGCGGCGGCGGCGGCGGCGAGCAGCAGCAGCGACACGAGAGCGATGTCGATACGTCGTCGACGCGAGATGGAGGGCTCCATTATTGTTGTGACTAGCTTGAATTTGATTGATGCTGTAGTACAGTCAAT
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| CDS seq | ATGGAGCCCTCCATCTCGCGTCGACGACGTATCGACATCGCTCTCGTGTCGCTGCTGCTGCTCGCCGCCGCCGCCGCCGCCGTCGACGCGGCGACCATCACCATGGTGAACCGCTGCTCGTACACGGTGTGGCCGGGCGCGCTCCCGGGCGGCGGCGCCCGGCTCGACCCGGGGCAGTCGTGGTCGATCAGCGTCGCCGCCGGCACACCGGCCGCCAGGATCTGGCCGCGCACCGGCTGCTCCTTCGACGGCGCCGGCCGCGGCCGCTGCGCCACGGGCGACTGCGCCGGCGCGCTGTCCTGCGCCGTCTCCGGCGAGCCGCCCACCACGCTGGCCGAGTACACGCTCGGCCGCCCCGGCGCCGGCGGCGACGACTTCCTCGACCTGTCGCTCATCGACGGGTTCAACGTGCCGGTGAGCTTCCAGCCGGCGAACGGCGGTGGCGCCCGGTGCAGCAAGGGGCGCGGGCCGAGCTGCGCCGTGGACATCACGGCGAGGTGCCTCCCCGAGCTCCGTGTCCCCGGCGGCTGCGCCAGCGCGTGCGGCAAGTTCGGCGGCGACACCTACTGCTGCCGGGGACGGTTCGAGCACGTGTGCCCGCCGACGAGCTACTCCATGTTCTTCAAGGGGCTCTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCCGCTGGCACCAACTACCGCGTCGACTTCTGCCCGCCGACGAGCGGCGTGACGGCCGGTGACGAGGACGACGAGATCGCCTCTGCTTAA
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| Protein seq | MEPSISRRRRIDIALVSLLLLAAAAAAVDAATITMVNRCSYTVWPGALPGGGARLDPGQSWSISVAAGTPAARIWPRTGCSFDGAGRGRCATGDCAGALSCAVSGEPPTTLAEYTLGRPGAGGDDFLDLSLIDGFNVPVSFQPANGGGARCSKGRGPSCAVDITARCLPELRVPGGCASACGKFGGDTYCCRGRFEHVCPPTSYSMFFKGLCPDAYSYAKDDQTSTFTCPAGTNYRVDFCPPTSGVTAGDEDDEIASA |
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| Function | Thaumatin-like protein [UniProtKB/Swiss-Prot:P81370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g43490 | LOC_Os12g43490.1 | Chr12 | 26979991 | 26981087 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCCTCCATCTCGCGTCGACGACGTATCGACATCGCTCTCGTGTCGCTGCTGCTGCTCGCCGCCGCCGCCGCCGCCGTCGACGCGGCGACCATCACCATGGTGAACCGCTGCTCGTACACGGTGTGGCCGGGCGCGCTCCCGGGCGGCGGCGCCCGGCTCGACCCGGGGCAGTCGTGGTCGATCAGCGTCGCCGCCGGCACACCGGCCGCCAGGATCTGGCCGCGCACCGGCTGCTCCTTCGACGGCGCCGGCCGCGGCCGCTGCGCCACGGGCGACTGCGCCGGCGCGCTGTCCTGCGCCGTCTCCGGCGAGCCGCCCACCACGCTGGCCGAGTACACGCTCGGCCGCCCCGGCGCCGGCGGCGACGACTTCCTCGACCTGTCGCTCATCGACGGGTTCAACGTGCCGGTGAGCTTCCAGCCGGCGAACGGCGGTGGCGCCCGGTGCAGCAAGGGGCGCGGGCCGAGCTGCGCCGTGGACATCACGGCGAGGTGCCTCCCCGAGCTCCGTGTCCCCGGCGGCTGCGCCAGCGCGTGCGGCAAGTTCGGCGGCGACACCTACTGCTGCCGGGGACGGTTCGAGCACGTGTGCCCGCCGACGAGCTACTCCATGTTCTTCAAGGGGCTCTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCCGCTGGCACCAACTACCGCGTCGACTTCTGCCCGCCGACGAGCGGCGTGACGGCCGGTGACGAGGACGACGAGATCGCCTCTGCTTAA
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| Protein seq | MEPSISRRRRIDIALVSLLLLAAAAAAVDAATITMVNRCSYTVWPGALPGGGARLDPGQSWSISVAAGTPAARIWPRTGCSFDGAGRGRCATGDCAGALSCAVSGEPPTTLAEYTLGRPGAGGDDFLDLSLIDGFNVPVSFQPANGGGARCSKGRGPSCAVDITARCLPELRVPGGCASACGKFGGDTYCCRGRFEHVCPPTSYSMFFKGLCPDAYSYAKDDQTSTFTCPAGTNYRVDFCPPTSGVTAGDEDDEIASA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.150504 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0630500 | RBH | 0.253787 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43450 | RBH | 0.358715 | 0.0 | 7.211046 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0630500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021680 | RBH | 0.0 | 47.251865 | 0.573943 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021760 | RBH | 0.0 | 4.523016 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022120 | RBH | 0.381819 | 16.063080 | 0.600271 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021100 | SBH | 2.039812 | 8.635176 | 69.860451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0361900 | RBH | 1.5219725 | 0.957937 | 0.4665655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0393800 | RBH | 0.8814245 | 15.6387065 | 0.0905475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021460 | SBH | 0.210625 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021360 | SBH | 0.000000 | 23.299801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021450 | RBH | 0.0 | 0.0 | 0.834157 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021650 | SBH | 0.251304 | 8.880651 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021120 | SBH | 0.0 | 1.175523 | 2.397020 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020880 | SBH | 0.0 | 0.0 | 19.740177 |
