Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g43390 | OGI:12069120 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26922175-26922699 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGGGCAGAAGAGGACTTGGTAGTTGCTGTTGGCGTTGCAGTGGCGCAGCTTGGTGTTGTCGGGGCAGCAGCTGTCCCTGCACGTCAGCGTCTCGCCGGAGCTGCAGGAGAAGCTCATCCCCACGTTGAACCCGTCGATCACCGACACGTCGTAGAAATCCAGCTGCTGGCTGCCGCCGGCGGAGCCCGCCAGCGTGAACTCCGCCAACGTCAGCGGCTTCTGGCCGGAGAGGGTGCACGACAGCGCGCCGGCGCAGTCGCCGGTGGCGCAGCTGCCGGTGCCGGCGCCGTTGAAGCTGCAGCCGGTCCGGCCCCACACCCTGCCGGAGCTGGTCCCCGCGGGCACGTCGATGGTCCACGTGTCCCCCGGGTTCAGCTGCACGCCGCCGCCCACCGGCGTCGCCGCCGGCCACACCGTGTACGGGCACTGGTTGGTGATGGTGAAGATGGCCGCGTTCGCAGTCCCGGCGGCGACCAGGACGACGACGAGGAGCACTGCGGAAGAGGTGGCCGGAGACGCCAT
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| CDS seq | ATGGCGTCTCCGGCCACCTCTTCCGCAGTGCTCCTCGTCGTCGTCCTGGTCGCCGCCGGGACTGCGAACGCGGCCATCTTCACCATCACCAACCAGTGCCCGTACACGGTGTGGCCGGCGGCGACGCCGGTGGGCGGCGGCGTGCAGCTGAACCCGGGGGACACGTGGACCATCGACGTGCCCGCGGGGACCAGCTCCGGCAGGGTGTGGGGCCGGACCGGCTGCAGCTTCAACGGCGCCGGCACCGGCAGCTGCGCCACCGGCGACTGCGCCGGCGCGCTGTCGTGCACCCTCTCCGGCCAGAAGCCGCTGACGTTGGCGGAGTTCACGCTGGCGGGCTCCGCCGGCGGCAGCCAGCAGCTGGATTTCTACGACGTGTCGGTGATCGACGGGTTCAACGTGGGGATGAGCTTCTCCTGCAGCTCCGGCGAGACGCTGACGTGCAGGGACAGCTGCTGCCCCGACAACACCAAGCTGCGCCACTGCAACGCCAACAGCAACTACCAAGTCCTCTTCTGCCCATAA
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| Protein seq | MASPATSSAVLLVVVLVAAGTANAAIFTITNQCPYTVWPAATPVGGGVQLNPGDTWTIDVPAGTSSGRVWGRTGCSFNGAGTGSCATGDCAGALSCTLSGQKPLTLAEFTLAGSAGGSQQLDFYDVSVIDGFNVGMSFSCSSGETLTCRDSCCPDNTKLRHCNANSNYQVLFCP |
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| Function | Thaumatin-like protein [UniProtKB/Swiss-Prot:P31110] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g43390 | LOC_Os12g43390.1 | Chr12 | 26922175 | 26922699 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCTCCGGCCACCTCTTCCGCAGTGCTCCTCGTCGTCGTCCTGGTCGCCGCCGGGACTGCGAACGCGGCCATCTTCACCATCACCAACCAGTGCCCGTACACGGTGTGGCCGGCGGCGACGCCGGTGGGCGGCGGCGTGCAGCTGAACCCGGGGGACACGTGGACCATCGACGTGCCCGCGGGGACCAGCTCCGGCAGGGTGTGGGGCCGGACCGGCTGCAGCTTCAACGGCGCCGGCACCGGCAGCTGCGCCACCGGCGACTGCGCCGGCGCGCTGTCGTGCACCCTCTCCGGCCAGAAGCCGCTGACGTTGGCGGAGTTCACGCTGGCGGGCTCCGCCGGCGGCAGCCAGCAGCTGGATTTCTACGACGTGTCGGTGATCGACGGGTTCAACGTGGGGATGAGCTTCTCCTGCAGCTCCGGCGAGACGCTGACGTGCAGGGACAGCTGCTGCCCCGACAACACCAAGCTGCGCCACTGCAACGCCAACAGCAACTACCAAGTCCTCTTCTGCCCATAA
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| Protein seq | MASPATSSAVLLVVVLVAAGTANAAIFTITNQCPYTVWPAATPVGGGVQLNPGDTWTIDVPAGTSSGRVWGRTGCSFNGAGTGSCATGDCAGALSCTLSGQKPLTLAEFTLAGSAGGSQQLDFYDVSVIDGFNVGMSFSCSSGETLTCRDSCCPDNTKLRHCNANSNYQVLFCP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0629300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43380 | SBH | 27.940113 | 30.982952 | 0.874173 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0629300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021660 | SBH | 1.697910 | 13.506574 | 5.360141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021740 | SBH | 1.155115 | 2.681408 | 4.860201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022100 | SBH | 37.751743 | 18.409523 | 6.289042 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021100 | SBH | 2.039812 | 8.635176 | 69.860451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0360900 | RBH | 1.59636 | 0 | 0.0138935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0393600 | SBH | 15.0633095 | 39.1618405 | 0.0785845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021190 | SBH | 2.251229 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021360 | RBH | 0.000000 | 23.299801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021410 | RBH | 0.337559 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021650 | SBH | 0.251304 | 8.880651 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021090 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020850 | RBH | 0.0 | 0.0 | 0.0 |
