Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g42640 | OGI:12055860 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26500867-26504567 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAATGGGATCAACATGCTCAAAGGGTTGTTTGGGATCTGTGTGACTTGCCTTGCTGGCCTTGGAACTCTTCAAATTCTTCTCCTGCGAAAACGGACTCTCCGGAAACGTCGGAATCTAAACAGAAAAGAGCAAAAACACCAAAACAGCACATAAACAAGCATGAACAGTACAGGTGGATATTTTTAACATGTAGATCTCAATTTTAGAAAAATTTAGAGACTTGAACCAACTAAATCCGAGCTAAGATGAATTAGTTATGAATTTTCAAAGATTAAATCGGATTAAATCATTTATTTAGATTTTAATTGAATTATGATGCAATAATGAATTATTTTTGAAAAGGAAAAGGGAATTATTGCGTCAGCGGCTAGGGTTTGCGGTGGACCGGGTGCACGGCGGCGGTTCACGGGTTTGGACGGCCGAGATCGATCCATCCAAAACGGACGGCCGAGATTGATCGGGTCTACGGCGGCTCACGGGAGACGACGACGATGACGCCAGCGATGACGTCACCACCGGCGGCGGCTCGGGCGCGCATGCTCGCCGGCGAACGACGGCGCGGCGGCGCGAACGGAGAGCACCTACGGGTAGCGGATGGCACGGCGAACTCACCGGTGACCAAAGCAACGGCGGAAGATCAACGGACGGCGACAGCGTCGAGGAAGAAACGGCGGCGACCTTCGGCTTGACGACGACGGCGAGGCTCCGGCGGTCTACAGCAACAATGAAGGGGCGGACGAGGACGGCGACGCGACGGCGACCACGACGGCGGCCTTCCCGAGCGACGGCGACGACTGGAGCGACGGCGACGCACGGCTGGAGCGGCGGCGCTAGGCTACACGGAGCTAGGGCTCTACCGGCGACGAGAGGCGAAGGCGAGGGTGGCGGCGGGTAGCGGCGGGCTTGGGGGTCCTTTTATAGGGGCTAGGAGGCGGCGGCGAAGGCCCACGGCGACCGGCGACGGCGAAGGAAGGTCTAGGGTTCGGGGAGAGAGACGAATCCGATTCGAGATCGAATCCACGGATTTCCAAACGATTTTAGCCGACGATTCCAAAAGAGAAAGGGTAGAAGGGGTCCCGGGGATCAATTCCCCTCTATTGATTTCACCGGAAACGGAAAGGCGCGGCTGAATTTGGAAGGAGACGACGACGACGCGGCGCTAGGGTTCGGGTGGCGGCCGGCCGGAGGAAGACGAAGACTGACAGGTGGGCCCCACCTGTCAGCGAGCGGGAGCGCGCGCGCGGGCGGCGGCTCGGCTGCGGGCCGACTTTGGCCAGGGAGAGAGAGAGAGAGCGGTTTTGGGCCGACTTTCGGCCCAAAGCCAAAAGAGAACTTTTAAAACCTTTTCCAATTTAAATTATTCATGAAATGCAATTCCATTTATTAAAAATACTTCCTTAGCTCAAATAAATCCCAGAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCTATTTTATATTGGGATTTATTATTTAAAATTAGATCTTTTCAAGGCTTTTAAAATGAATTCTAATAATAATTTATTAAATAATTTATAAATCCTAAAACAAAAAAAATCAGGATGTGACACAATGGCTGATTGAAGGTTTTGAACAAACCAAGTCCAACTTTCTATGGATTCTGTCTCTATGACACCGAAAGCAACCGGGAACATCCAATTATTTCCATCAATGGCTACAGCTGCAGCAAGCTGACCTTTATTTTTTCCAACTAAATGTGTACTGTCCATGGCAATATAGGGCCTGCAGCCCAGTAGGAACCCATCAATACAAGGTTTGAGAGCTATAAATAACCTTTTGAAGCACATCTGACCATTATGCTCTTCGATATCAATCTGAACTTTACTTCCTGGCGCTGACTTCAATAGCTCTTCCTTGAAAGTAAACAGCAAAGCATAGCTATCATCCCATTTGCCAAACAATTTCTCTAGTGCCTTTTCTTTCCCTTTAAAAACCTTGTCATATCCAACTGTAATGTGATATTTCCGCTCTAGCCTTTCCTGCAACTCCTTTGGCCCCAAGCTTGGTTTCTCTCTAAGCATGTCGATAACTCTGTCACATACCCAACTGCTTGAAGCCATGTCTTCTCCTGACCTATTAACAGATGAACATATATGTTCAATTTTGTTTCTTTTTATCTGCAAATCAAAATGGCAAGATTAAAGATGATTGAAAGGTTCAGAACATAGCAAAATTAGATTACACAAATTCAATTACCTGGCAAATCTTGGTGCCTCTCTTGCATGAAGCATGAATCCTCCACTTGCAATTCTCTTCTTTTGCCCTCTTGCAAACAAGAATCAACCTTGTTTTGTCCTTCTTCTTAGTAAAAAAGCCATAAGCTTTCAGAACTGCATGGTGTGTAAAAGCTTTTTTGCATTGATTGACAATTTGGAAAAATGTACCCTCATCAACACATGGTTTGTCAATATCATGTGTGTAAACTACCTCATCATCAGTATCAGAGTCAACATCATCATTTACTTCAGAGTCCTCAGAACAACTCTCTGGTTCATATTCACAATCTGAGTCAGATGAAGAAGAATCATCGGCACTTGTGTAGCTACTGTTACTATCCACAGCTAATGAATCATCGCTAGACCCTAAGGATTCAGCATCTAACCCTGAATTTTTAGTGCCCAAGTCTACATCAACCAACCCATCTTTGACATTAGCTGCAGTCTTTTTCTTGCTTGCACACTTTGGACTCTCAAGTAGTGGGCACTTATTTAGTGCACACTCATTTTTTGCACACTCATTTGGTGTACACTCCTGTGTTGGTTGGGTCTGCTCAGCTAGCAAAGGAATGCATTGAGGAGGAGTACATGGTGTCCGATCTTGTGATTTCTGATTTTCCAATGTGTTTTTTGAAGGTGAAACAGCAATAGGACCCTCTAAATCATTTACTTGACAATGCAATCGAAGCAAATTTTGTGGTTTATGTCGTACCAACAATCTCCACAAATGCTTATCTGTTCGAACCTCAATGTACTCCTCATCATTACAATCTGGATCAGGATACCAAAAAGAAATCAACTGCCTAGAACCCCAGTCTATTGACTTTGCTAAGTCAGCACTCAAATCCATTAAGGAATACCGATCTGGATTAATATAAATTGGAATTTCTCTGCGATCTATGTATCTCTTCGGCTTACCATCTGGCATGCTAAAGAAAGCGCGGACGCTAACCAAAATTTTCATTAAATTGCCCCTACATAGCATGGAAGAAAACCTAATCAACCAACCCACTGGACGGAAAGAAAGCAAATTTACAAGATTAGTACCTATTCGGGGCTACAACTTCACTCGTTTCCATTCTGCTCGATGAATTCACAGCTCGATGTCAGCCCTGTTCGCTAAGCTTTGCCGTAGCAACTTGCTCGTCGAGACATCGCTGTAGCCGGTTGGGCCCCTCGTCCTCCGTCCTCCAGGACCTGCCACGCTTCGACTTCAGGACGCAAACGCAGCCGCTCCGTCCGCTAGGACCTGCTCGCCGAGACCCCGCCGCAGCCGGACGCCCACCGGGACGCTGCCGTAGCCGCTCCGCCCGCCAAGACCCGCCGCGCTCCGCTCAGCTAGCTGGACCCACTGCGCTCCGCCCTCCAGGACACAGCTGCAGCTCCCTGCTCACCGGAACCCGCCGCCGACACCCATCGGGATGCCGCCGACGCCCAT
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| CDS seq | ATGGGCGTCGGCGGCATCCCGATGGGTGTCGGCGGCGGGTTCCGGGGCAATTTAATGAAAATTTTGGTTAGCGTCCGCGCTTTCTTTAGCATGCCAGATGGTAAGCCGAAGAGATACATAGATCGCAGAGAAATTCCAATTTATATTAATCCAGATCGGTATTCCTTAATGGATTTGAGTGCTGACTTAGCAAAGTCAATAGACTGGGGTTCTAGGCAGTTGATTTCTTTTTGGTATCCTGATCCAGATTGTAATGATGAGGAGTACATTGAGGTTCGAACAGATAAGCATTTGTGGAGATTGTTGGTACGACATAAACCACAAAATTTGCTTCGATTGCATTGTCAAGTAAATGATTTAGAGGGTCCTATTGCTGTTTCACCTTCAAAAAACACATTGGAAAATCAGAAATCACAAGATCGGACACCATGTACTCCTCCTCAATGCATTCCTTTGCTAGCTGAGCAGACCCAACCAACACAGGAGTGTACACCAAATGAGTGTGCAAAAAATGAGTGTGCACTAAATAAGTGCCCACTACTTGAGAGTCCAAAGTGTGCAAGCAAGAAAAAGACTGCAGCTAATGTCAAAGATGGGTTGGTTGATGTAGACTTGGGCACTAAAAATTCAGGGTTAGATGCTGAATCCTTAGGGTCTAGCGATGATTCATTAGCTGTGGATAGTAACAGTAGCTACACAAGTGCCGATGATTCTTCTTCATCTGACTCAGATTGTGAATATGAACCAGAGAGTTGTTCTGAGGACTCTGAAGTAAATGATGATGTTGACTCTGATACTGATGATGAGGTAGTTTACACACATGATATTGACAAACCATGTGTTGATGAGGGTACATTTTTCCAAATTGTCAATCAATGCAAAAAAGCTTTTACACACCATGCAGTTCTGAAAGCTTATGGCTTTTTTACTAAGAAGAAGGACAAAACAAGGTTGATTCTTGTTTGCAAGAGGGCAAAAGAAGAGAATTGCAAGTGGAGGATTCATGCTTCATGCAAGAGAGGCACCAAGATTTGCCAGATAAAAAGAAACAAAATTGAACATATATGTTCATCTGTTAATAGGTCAGGAGAAGACATGGCTTCAAGCAGTTGGGTATGTGACAGAGTTATCGACATGCTTAGAGAGAAACCAAGCTTGGGGCCAAAGGAGTTGCAGGAAAGGCTAGAGCGGAAATATCACATTACAGTTGGATATGACAAGGTTTTTAAAGGGAAAGAAAAGGCACTAGAGAAATTGTTTGGCAAATGGGATGATAGCTATGCTTTGCTGTTTACTTTCAAGGAAGAGCTATTGAAGTCAGCGCCAGGAAGTAAAGTTCAGATTGATATCGAAGAGCATAATGGTCAGATGTGCTTCAAAAGGCCCTATATTGCCATGGACAGTACACATTTAGTTGGAAAAAATAAAGACCGCCGGAGCCTCGCCGTCGTCGTCAAGCCGAAGGTCGCCGCCGTTTCTTCCTCGACGCTGTCGCCGTCCGTTGATCTTCCGCCGTTGCTTTGGTCACCGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGCAAGTCACACAGATCCCAAACAACCCTTTGAGCATGTTGATCCCATTTAA
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| Protein seq | MGVGGIPMGVGGGFRGNLMKILVSVRAFFSMPDGKPKRYIDRREIPIYINPDRYSLMDLSADLAKSIDWGSRQLISFWYPDPDCNDEEYIEVRTDKHLWRLLVRHKPQNLLRLHCQVNDLEGPIAVSPSKNTLENQKSQDRTPCTPPQCIPLLAEQTQPTQECTPNECAKNECALNKCPLLESPKCASKKKTAANVKDGLVDVDLGTKNSGLDAESLGSSDDSLAVDSNSSYTSADDSSSSDSDCEYEPESCSEDSEVNDDVDSDTDDEVVYTHDIDKPCVDEGTFFQIVNQCKKAFTHHAVLKAYGFFTKKKDKTRLILVCKRAKEENCKWRIHASCKRGTKICQIKRNKIEHICSSVNRSGEDMASSSWVCDRVIDMLREKPSLGPKELQERLERKYHITVGYDKVFKGKEKALEKLFGKWDDSYALLFTFKEELLKSAPGSKVQIDIEEHNGQMCFKRPYIAMDSTHLVGKNKDRRSLAVVVKPKVAAVSSSTLSPSVDLPPLLWSPIPTFPESPFSQEKNLKSSKASKASHTDPKQPFEHVDPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g42640 | LOC_Os12g42640.1 | Chr12 | 26500867 | 26504567 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCGTCGGCGGCATCCCGATGGGTGTCGGCGGCGGGTTCCGGGGCAATTTAATGAAAATTTTGGTTAGCGTCCGCGCTTTCTTTAGCATGCCAGATGGTAAGCCGAAGAGATACATAGATCGCAGAGAAATTCCAATTTATATTAATCCAGATCGGTATTCCTTAATGGATTTGAGTGCTGACTTAGCAAAGTCAATAGACTGGGGTTCTAGGCAGTTGATTTCTTTTTGGTATCCTGATCCAGATTGTAATGATGAGGAGTACATTGAGGTTCGAACAGATAAGCATTTGTGGAGATTGTTGGTACGACATAAACCACAAAATTTGCTTCGATTGCATTGTCAAGTAAATGATTTAGAGGGTCCTATTGCTGTTTCACCTTCAAAAAACACATTGGAAAATCAGAAATCACAAGATCGGACACCATGTACTCCTCCTCAATGCATTCCTTTGCTAGCTGAGCAGACCCAACCAACACAGGAGTGTACACCAAATGAGTGTGCAAAAAATGAGTGTGCACTAAATAAGTGCCCACTACTTGAGAGTCCAAAGTGTGCAAGCAAGAAAAAGACTGCAGCTAATGTCAAAGATGGGTTGGTTGATGTAGACTTGGGCACTAAAAATTCAGGGTTAGATGCTGAATCCTTAGGGTCTAGCGATGATTCATTAGCTGTGGATAGTAACAGTAGCTACACAAGTGCCGATGATTCTTCTTCATCTGACTCAGATTGTGAATATGAACCAGAGAGTTGTTCTGAGGACTCTGAAGTAAATGATGATGTTGACTCTGATACTGATGATGAGGTAGTTTACACACATGATATTGACAAACCATGTGTTGATGAGGGTACATTTTTCCAAATTGTCAATCAATGCAAAAAAGCTTTTACACACCATGCAGTTCTGAAAGCTTATGGCTTTTTTACTAAGAAGAAGGACAAAACAAGGTTGATTCTTGTTTGCAAGAGGGCAAAAGAAGAGAATTGCAAGTGGAGGATTCATGCTTCATGCAAGAGAGGCACCAAGATTTGCCAGATAAAAAGAAACAAAATTGAACATATATGTTCATCTGTTAATAGGTCAGGAGAAGACATGGCTTCAAGCAGTTGGGTATGTGACAGAGTTATCGACATGCTTAGAGAGAAACCAAGCTTGGGGCCAAAGGAGTTGCAGGAAAGGCTAGAGCGGAAATATCACATTACAGTTGGATATGACAAGGTTTTTAAAGGGAAAGAAAAGGCACTAGAGAAATTGTTTGGCAAATGGGATGATAGCTATGCTTTGCTGTTTACTTTCAAGGAAGAGCTATTGAAGTCAGCGCCAGGAAGTAAAGTTCAGATTGATATCGAAGAGCATAATGGTCAGATGTGCTTCAAAAGGCCCTATATTGCCATGGACAGTACACATTTAGTTGGAAAAAATAAAGACCGCCGGAGCCTCGCCGTCGTCGTCAAGCCGAAGGTCGCCGCCGTTTCTTCCTCGACGCTGTCGCCGTCCGTTGATCTTCCGCCGTTGCTTTGGTCACCGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGCAAGTCACACAGATCCCAAACAACCCTTTGAGCATGTTGATCCCATTTAA
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| Protein seq | MGVGGIPMGVGGGFRGNLMKILVSVRAFFSMPDGKPKRYIDRREIPIYINPDRYSLMDLSADLAKSIDWGSRQLISFWYPDPDCNDEEYIEVRTDKHLWRLLVRHKPQNLLRLHCQVNDLEGPIAVSPSKNTLENQKSQDRTPCTPPQCIPLLAEQTQPTQECTPNECAKNECALNKCPLLESPKCASKKKTAANVKDGLVDVDLGTKNSGLDAESLGSSDDSLAVDSNSSYTSADDSSSSDSDCEYEPESCSEDSEVNDDVDSDTDDEVVYTHDIDKPCVDEGTFFQIVNQCKKAFTHHAVLKAYGFFTKKKDKTRLILVCKRAKEENCKWRIHASCKRGTKICQIKRNKIEHICSSVNRSGEDMASSSWVCDRVIDMLREKPSLGPKELQERLERKYHITVGYDKVFKGKEKALEKLFGKWDDSYALLFTFKEELLKSAPGSKVQIDIEEHNGQMCFKRPYIAMDSTHLVGKNKDRRSLAVVVKPKVAAVSSSTLSPSVDLPPLLWSPIPTFPESPFSQEKNLKSSKASKASHTDPKQPFEHVDPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.279793 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0621300 | RBH | 0.235494 | 0.122373 | 1.401777 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44590 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0621300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021250 | RBH | 0.000000 | 0.000000 | 1.333419 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016100 | SBH | 0.000000 | 0.0 | 0.795451 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016450 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015800 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0354800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018810 | SBH | 0.656915 | 1.227103 | 0.749630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0386000 | RBH | 0.219803 | 0.6266345 | 4.4976995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019060 | SBH | 0.365852 | 0.359422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019200 | SBH | 9.466825 | 12.093225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019240 | SBH | 0.599863 | 0.0 | 1.908276 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018740 | SBH | 4.780860 | 33.631927 | 13.465932 |
