Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g42020 | OGI:12067040 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26055221-26057002 | ||||||||
| Gene Symbol | BIF2, bif2, Osbif2, OsBIF2, OsPID, PID, OsPINOID | ||||||||||
| DNA seq | ACTTCACCACCGCACAGCGAGCTCGCCGCGGAGAGCTTTCGCCGGAGAGGTAGACGACGACGGCGACGACAGTGTCACGTGCTCACGTTCATGGTGGCGGCGGTGCGCGCGCCGGTGAAGCCGGAGATGGTGGAGCTCTCGCCGGCGGCGATGGAGAGGTACTCCTCCGACGCCGACACGACGGCGCCGAACTCGAGCCTTAGCTCGGCGGCGAGCAGCACGGGGAGCCTCGCGCGGTGCTCGAGCCTGTCGCGCCTGTCGTTCGACTGCTCGCCGTCGGCCGCCGTGGCGGCGGCGGCGACGTCGTGCTCGCCGCCGCGGGCGTCGGTGCTGTTGCGGCCGCACAGGTCCGGCGACGTCGCGTGGGCGGCCATCCGCGCGGCTTCGACGACCTCCGCGGCGCCGCTAGGCCCGCGGGACTTCAAGCTCGTGCGGCGCATCGGCGGCGGCGACATCGGGACGGTGTACCTGTGCCGCCTCCGGAGCTCGCCGGAGAGGGAGAGCCCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGGAAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCCTTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATGGAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTCCCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCACATGATGGGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACGGCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGTCCACCACCTCGCCGTCTCTCGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTGCTTCCCGGACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCGTGGCGGCGCCGCGTCCGCGGTTCGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGCCCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGTGTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTCGTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCCGACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGAGCATATTGACCGTTGCTGTCTGCTACTACCTACCCGCGTCGTCGCCGACATCGCCGGCGGGAGACACGCTCCGGCCACCGTGACATTAATTTCTCGTTGACCCTTAGCTACCGCGTTGAATGTACACACTGTTAATTAATTACTACTCCTAGTTAATCACTGCTAATCACCTTGCTGTTAGTACTACTAAACTAATATAATCTAGTGGCTTAATTAATCAGCTTGCTTTGAGTGATA
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| CDS seq | ATGGTGGCGGCGGTGCGCGCGCCGGTGAAGCCGGAGATGGTGGAGCTCTCGCCGGCGGCGATGGAGAGGTACTCCTCCGACGCCGACACGACGGCGCCGAACTCGAGCCTTAGCTCGGCGGCGAGCAGCACGGGGAGCCTCGCGCGGTGCTCGAGCCTGTCGCGCCTGTCGTTCGACTGCTCGCCGTCGGCCGCCGTGGCGGCGGCGGCGACGTCGTGCTCGCCGCCGCGGGCGTCGGTGCTGTTGCGGCCGCACAGGTCCGGCGACGTCGCGTGGGCGGCCATCCGCGCGGCTTCGACGACCTCCGCGGCGCCGCTAGGCCCGCGGGACTTCAAGCTCGTGCGGCGCATCGGCGGCGGCGACATCGGGACGGTGTACCTGTGCCGCCTCCGGAGCTCGCCGGAGAGGGAGAGCCCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGGAAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCCTTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATGGAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTCCCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCACATGATGGGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACGGCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGTCCACCACCTCGCCGTCTCTCGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTGCTTCCCGGACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCGTGGCGGCGCCGCGTCCGCGGTTCGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGCCCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGTGTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTCGTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCCGACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGA
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| Protein seq | MVAAVRAPVKPEMVELSPAAMERYSSDADTTAPNSSLSSAASSTGSLARCSSLSRLSFDCSPSAAVAAAATSCSPPRASVLLRPHRSGDVAWAAIRAASTTSAAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERESPCMYAMKVVDRRAVARKQKLGRAAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCPGGDLHSLRHRMPSRRFPLPSARFYAAEVLLAIEYLHMMGIVYRDLKPENVLIRADGHIMLTDFDLSLQSTTSPSLDGDTDTDDEASGGASCFPDHLLRFKRRRNAVAAPRPRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVFLYELIYGRTPFAGATNEATLRNIVRRPLAFPSGSGSCGPADADARDLIARLLAKDPAARLGSRRGAADVKSHPFFKSLNLALLRSSRPPVVPGAGAGAAPLHRSQSCKAAPTTPPPPTTTKPANATARFDLF |
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| Function | Protein kinase PINOID [UniProtKB/Swiss-Prot:Q2QM77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g42020 | LOC_Os12g42020.1 | Chr12 | 26055221 | 26057002 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCGGCGGTGCGCGCGCCGGTGAAGCCGGAGATGGTGGAGCTCTCGCCGGCGGCGATGGAGAGGTACTCCTCCGACGCCGACACGACGGCGCCGAACTCGAGCCTTAGCTCGGCGGCGAGCAGCACGGGGAGCCTCGCGCGGTGCTCGAGCCTGTCGCGCCTGTCGTTCGACTGCTCGCCGTCGGCCGCCGTGGCGGCGGCGGCGACGTCGTGCTCGCCGCCGCGGGCGTCGGTGCTGTTGCGGCCGCACAGGTCCGGCGACGTCGCGTGGGCGGCCATCCGCGCGGCTTCGACGACCTCCGCGGCGCCGCTAGGCCCGCGGGACTTCAAGCTCGTGCGGCGCATCGGCGGCGGCGACATCGGGACGGTGTACCTGTGCCGCCTCCGGAGCTCGCCGGAGAGGGAGAGCCCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGGAAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCCTTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATGGAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTCCCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCACATGATGGGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACGGCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGTCCACCACCTCGCCGTCTCTCGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTGCTTCCCGGACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCGTGGCGGCGCCGCGTCCGCGGTTCGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGCCCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGTGTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTCGTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCCGACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGA
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| Protein seq | MVAAVRAPVKPEMVELSPAAMERYSSDADTTAPNSSLSSAASSTGSLARCSSLSRLSFDCSPSAAVAAAATSCSPPRASVLLRPHRSGDVAWAAIRAASTTSAAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERESPCMYAMKVVDRRAVARKQKLGRAAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCPGGDLHSLRHRMPSRRFPLPSARFYAAEVLLAIEYLHMMGIVYRDLKPENVLIRADGHIMLTDFDLSLQSTTSPSLDGDTDTDDEASGGASCFPDHLLRFKRRRNAVAAPRPRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVFLYELIYGRTPFAGATNEATLRNIVRRPLAFPSGSGSCGPADADARDLIARLLAKDPAARLGSRRGAADVKSHPFFKSLNLALLRSSRPPVVPGAGAGAAPLHRSQSCKAAPTTPPPPTTTKPANATARFDLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.086199 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0614600 | RBH | 0.0 | 0.0 | 0.339044 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44020 | RBH | 0.0 | 0.046942 | 0.268843 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0614600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021210 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020130 | RBH | 0.0 | 1.930349 | 1.272660 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0349600 | RBH | 0.96936 | 4.5985685 | 1.7315945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0379500 | RBH | 0.541395 | 2.953585 | 5.090961 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020430 | RBH | 0.0 | 5.410662 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020170 | RBH | 0.0 | 0.490855 | 0.285502 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019970 | RBH | 0.0 | 0.0 | 0.0 |
